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Domain combinations for 49879,56024,56024,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49879 - SMAD/FHA domain
56024 - Phospholipase D/nuclease
56024 - Phospholipase D/nuclease

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Eucalyptus_grandis_v201   (Rose gum)   2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 1
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   3
Thellungiella_halophila_v173 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1
Capsella_rubella_v183 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1
Arabidopsis_thaliana_10   (Thale cress)   1
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   1
Phaseolus_vulgaris_v186   (French bean)   1
Glycine_max_v109   (Soybean)   1
Cucumis_sativus_v122   (Cucumber)   1
Fragaria_vesca_   (Wild strawberry)   1
Prunus_persica_v139   (Peach)   1
Populus_trichocarpa_v156   (Black cottonwood)   2
Vitis_vinifera_   (Wine grape)   1
Aquilegia_coerulea_v195 2
Triticum_urartu_22 1
Triticum_aestivum_22   (Bread wheat)   2
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1
Oryza_sativa_v193   (Rice)   1
Physcomitrella_patens 1

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   1

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 1
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
Uniprot_2018_03_genome 720
NCBI_2017_08_genome 99
STRING_v9.0.5_(STRING) 7

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