SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for 49879,57850,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49879 - SMAD/FHA domain
57850 - RING/U-box

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Takifugu_rubripes_76_4   (Torafugu)   1
Adineta_vaga 1
Tribolium_castaneum_3.0   (Red flour beetle)   0
Amphimedon_queenslandica 1
Capsaspora_owczarzaki_ATCC_30864_ 1
Conidiobolus_coronatus_NRRL28638_v1.0 1
Mortierella_verticillata_NRRL_6337_ 3
Phycomyces_blakesleeanus_ 1
Rhizopus_oryzae_RA_99-880_ 5
Mucor_circinelloides_ 1
Rhizomucor_miehei_CAU432_ 2
Malassezia_globosa_CBS_7966_ 0
Sporisorium_reilianum_22 0
Ustilago_maydis_ 0
Mixia_osmundae_IAM_14324_v1.0 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Melampsora_laricis-populina_ 0
Microbotryum_violaceum_22 0
Wallemia_sebi_v1.0 0
Sphaerobolus_stellatus_v1.0 0
Piloderma_croceum_F_1598_v1.0 0
Coniophora_puteana 1
Hydnomerulius_pinastri_v2.0 0
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_microcarpus_441_v1.0 0
Coprinopsis_cinerea_okayama7_130_v3 0
Pleurotus_ostreatus_   (Oyster mushroom)   0
Amanita_thiersii_Skay4041_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Galerina_marginata_v1.0 0
Hebeloma_cylindrosporum_h7_v2.0 1
Laccaria_bicolor_S238N-H82_ 0
Agaricus_bisporus_var._bisporus_ 0
Schizophyllum_commune_ 1
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Punctularia_strigosozonata_v1.0 0
Sebacina_vermifera_MAFF_305830_v1.0 0
Tulasnella_calospora_AL13/4D_v1.0 0
Postia_placenta_ 2
Wolfiporia_cocos_MD-104_SS10__v1.0 1
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Dichomitus_squalens 1
Trametes_versicolor_v1.0 0
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 0
Podospora_anserina_ 0
Sporotrichum_thermophile_ATCC_42464_ 0
Thielavia_terrestris_NRRL_8126_ 0
Chaetomium_globosum_CBS_148.51_ 0
Neurospora_tetrasperma_ 0
Neurospora_discreta_FGSC_8579_ 0
Neurospora_crassa_OR74A_ 0
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 0
Acremonium_alcalophilumv_1.0 0
Glomerella_graminicola_22 0
Fusarium_graminearum_ 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Fusarium_verticillioides_7600_ 0
Trichoderma_asperellum_CBS_433.97_v1.0 0
Trichoderma_citrinoviride_v1.0 1
Trichoderma_reesei_1.2 0
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 0
Amorphotheca_resinae_v1.0   (Creosote fungus)   1
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 0
Didymella_exigua_CBS_183.55_v1.0 0
Leptosphaeria_maculans_22 0
Setosphaeria_turcica_v1.0 0
Cochliobolus_miyabeanus_ATCC_44560_v1.0 0
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Cochliobolus_lunatus_m118_v2.0 1
Pyrenophora_teres_f._teres_22 1
Pyrenophora_tritici-repentis_ 1
Stagonospora_nodorum_ 0
Dothistroma_septosporum 0
Septoria_musiva_v1.0 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Paracoccidioides_brasiliensis_Pb18_ 0
Coccidioides_posadasii_RMSCC_3488_ 0
Coccidioides_immitis_RS_ 0
Ajellomyces_dermatitidis_SLH14081_ 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Microsporum_canis_CBS_113480_ 0
Trichophyton_equinum_CBS_127.97_ 0
Trichophyton_verrucosum_HKI_0517_ 0
Arthroderma_benhamiae_CBS_112371_ 0
Trichophyton_tonsurans_CBS_112818_ 0
Trichophyton_rubrum_CBS_118892_ 0
Aspergillus_zonatus_v1.0 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 0
Penicillium_chrysogenum_v1.0 0
Aspergillus_acidus_v1.0 0
Aspergillus_brasiliensis_v1.0 0
Aspergillus_sydowii_v1.0 0
Aspergillus_versicolor_v1.0 0
Aspergillus_glaucus 0
Aspergillus_carbonarius_ITEM_5010_ 0
Neosartorya_fischeri_NRRL_181_ 0
Aspergillus_terreus_NIH2624_ 0
Aspergillus_tubingensis_v1.0 0
Aspergillus_wentii_v1.0 0
Aspergillus_oryzae_RIB40_ 0
Aspergillus_niger_22 0
Aspergillus_flavus_NRRL3357_ 0
Aspergillus_clavatus_NRRL_1_ 0
Penicillium_marneffei_ATCC_18224_ 0
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Ashbya_gossypii_ATCC_10895_ 0
Kluyveromyces_lactis 0
Catenaria_anguillulae_PL171_v1.0 0
Allomyces_macrogynus_ATCC_38327_ 1
Spizellomyces_punctatus_DAOM_BR117_ 1
Entamoeba_dispar_1.2 1
Entamoeba_invadens_1.2 1
Entamoeba_histolytica_1 1
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 1
Leishmania_mexicana_2.4 1
Leishmania_major_strain_Friedlin_ 1
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_vivax_ 1
Trypanosoma_cruzi_strain_CL_Brener 1
Trypanosoma_congolense_2.4 2
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 1
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_ultimum_v1.7-2 1
Paramecium_tetraurelia_ 4
Tetrahymena_thermophila_SB210_1_ 3
Ichthyophthirius_multifiliis_strain_G5_ 1
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 1
Trichomonas_vaginalis_ 3
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   2
Cryptococcus_neoformans_B-3501A_ 0
Cryptococcus_neoformans_JEC21_ 0
Paracoccidioides_brasiliensis_Pb01_ 0
Coccidioides_posadasii_str._Silveira_ 0
Coccidioides_immitis_RMSCC_2394_ 0
Ajellomyces_dermatitidis_ER-3_ 0
Histoplasma_capsulatum_H143 0
Histoplasma_capsulatum_H88 0
Histoplasma_capsulatum_G186AR 0
Batrachochytrium_dendrobatidis_JEL423_ 0
Batrachochytrium_dendrobatidis_JAM81_ 0
Trypanosoma_brucei_Lister_427_v4.1 1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
Protozoadb_2010_08_(Protozoadb) 17
STRING_v9.0.5_(STRING) 13
TargetDB__(Targets) 2
NCBI_2017_08_genome 87
Uniprot_2018_03_genome 1374

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]