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Home > SCOP hierarchy > Domain combination - 49879,_gap_,56024,_gap_,56024,_gap_

Domain combinations for 49879,_gap_,56024,_gap_,56024,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49879 - SMAD/FHA domain
56024 - Phospholipase D/nuclease
56024 - Phospholipase D/nuclease

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Eucalyptus_grandis_v201 (Rose gum) 1

Theobroma_cacao_B97-61/B2_v1 (Cacao) 0

Gossypium_raimondii_v221 1

Citrus_clementina_v165 1

Citrus_sinensis_v154 (Sweet orange) 1

Thellungiella_halophila_v173 1

Brassica_rapa_Chiifu-401_1.2 (Field mustard) 1

Capsella_rubella_v183 0

Arabidopsis_lyrata_ (Lyrate rockcress) 1

Arabidopsis_thaliana_10 (Thale cress) 1

Medicago_truncatula_ (Barrel medic) 1

Phaseolus_vulgaris_v186 (French bean) 1

Glycine_max_v109 (Soybean) 1

Fragaria_vesca_ (Wild strawberry) 1

Malus_domestica_v196 (Apple) 1

Prunus_persica_v139 (Peach) 1

Linum_usitatissimum_v200 (Flax) 1

Manihot_esculenta_v147 (Cassava) 1

Populus_trichocarpa_v156 (Black cottonwood) 1

Vitis_vinifera_ (Wine grape) 1

Solanum_tuberosum_ (Potato) 1

Actinidia_chinensis_Hongyang_ 0

Amborella_trichopoda_22 1

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Strains
Genome Number

Theobroma_cacao_Matina_1-6_v0.9 (Cacao) 1

Longest transcript per gene
Genome Number

Arabidopsis_thaliana_10 (Thale cress) 1

Others
Genome Number

Lotus_japonicus__(Early_assembly) 1

Malus_x_domestica_(Duplicate) (Apple) 1

Ricinus_communis__(Early_assembly) (Castor bean) 1

STRING_v9.0.5_(STRING) 4

Uniprot_2018_03_genome 960

NCBI_2017_08_genome 83

TargetDB__(Targets) 1

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