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  Home > SCOP hierarchy > Domain combination - 49899,49899,_gap_

Domain combinations for 49899,49899,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49899 - Concanavalin A-like lectins/glucanases
49899 - Concanavalin A-like lectins/glucanases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   2
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   3
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_76_3   (Small-eared galago)   3
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Rattus_norvegicus_76_5.0   (Norway rat)   2
Mus_musculus_76_38   (House mouse)   2
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   4
Ochotona_princeps_76   (American pika)   2
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   6
Bos_taurus_76_3.1   (Cattle)   2
Ovis_aries_76_3.1   (Sheep)   3
Vicugna_pacos_76_1   (Alpaca)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   4
Canis_familiaris_76_3.1   (Dog)   4
Felis_catus_76_6.2   (Domestic cat)   3
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   2
Pteropus_vampyrus_76_1   (Large flying fox)   1
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   1
Loxodonta_africana_76_3   (African savanna elephant)   2
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   2
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   2
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Ornithorhynchus_anatinus_76_5   (Platypus)   0
Saccoglossus_kowalevskii_v3.0 6
Petromyzon_marinus_76_7.0   (Sea lamprey)   2
Meleagris_gallopavo_76_2   (Turkey)   1
Gallus_gallus_76_4   (Chicken)   1
Anas_platyrhynchos_76_1.0   (Mallard)   2
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_76_2.0   (Green anole)   2
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_76_1   (Coelacanth)   2
Lepisosteus_oculatus_76   (Spotted gar)   3
Gadus_morhua_76_1   (Atlantic cod)   3
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2
Takifugu_rubripes_76_4   (Torafugu)   6
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   3
Oryzias_latipes_76_1   (Japanese medaka)   4
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   3
Poecilia_formosa_76   (Amazon molly)   3
Oreochromis_niloticus_76_1.0   (Nile tilapia)   3
Astyanax_mexicanus_76   (Mexican tetra)   3
Danio_rerio_76_9   (Zebrafish)   8
Oikopleura_dioica 0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_76   (Vase tunicate)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   7
Adineta_vaga 0
Octopus_bimaculoides_280 0
Crassostrea_gigas_22   (Pacific oyster)   1
Lottia_gigantea_   (Owl limpet)   2
Helobdella_robusta_ 0
Capitella_sp._I_ 5
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   2
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   2
Drosophila_grimshawi_1.3 2
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 2
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   3
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   2
Anopheles_darlingi_22   (American malaria mosquito)   2
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   1
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   1
Strigamia_maritima_22 0
Sarcoptes_scabiei 2
Tetranychus_urticae_   (Two-spotted spider mite)   0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   0
Pristionchus_pacificus_ 1
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Meloidogyne_hapla_ 2
Onchocerca_volvulus_22 0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 4
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   1
Caenorhabditis_briggsae_2 1
Trichinella_spiralis_22 2
Hymenolepis_microstoma_ 0
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 1
Taenia_solium_   (Pork tapeworm)   1
Schistosoma_mansoni_ 2
Mnemiopsis_leidyi   (Sea walnut)   3
Thelohanellus_kitauei 0
Acropora_digitifera_v1.0 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   3
Hydra_vulgaris 3
Amphimedon_queenslandica 2
Trichoplax_adhaerens_ 2
Proterospongia_sp._ATCC_50818_ 2
Monosiga_brevicollis_ 2
Mixia_osmundae_IAM_14324_v1.0 0
Lodderomyces_elongisporus_NRRL_YB-4239_ 0
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 1
Selaginella_moellendorffii_ 0
Pinus_taeda   (Loblolly pine)   0
Malus_domestica_v196   (Apple)   1
Triticum_urartu_22 0
Oryza_nivara_22 0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Sorghum_bicolor_   (Sorghum)   0
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Chlorella_variabilis_sp._NC64A_ 0
Chlorella_vulgaris_ 0
Chlamydomonas_reinhardtii_4.0 1
Micromonas_sp._RCC299_ 0
Micromonas_pusilla_CCMP1545_v3.0 0
Thecamonas_trahens_ATCC_50062_ 0
Bigelowiella_natans_CCMP2755_22 0
Cyanophora_paradoxa_ 2
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Trypanosoma_vivax_ 0
Trypanosoma_cruzi_strain_CL_Brener 0
Trypanosoma_congolense_2.4 0
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Ectocarpus_siliculosus 0
Aureococcus_anophagefferens_ 1
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_irregulare_DAOM_BR486_22 0
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 0
Phytophthora_infestans_T30-4_ 1
Phytophthora_capsici_ 1
Hyaloperonospora_arabidopsidis_22 0
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 0
Emiliania_huxleyi_CCMP1516_ 1
Leptolyngbya_sp._PCC_7376 0
Pseudanabaena_sp._PCC_7367 0
Trichodesmium_erythraeum_IMS101 0
Nostoc_sp._PCC_7524 0
Eggerthella_lenta_DSM_2243 1
Streptosporangium_roseum_DSM_43021 0
Streptomyces_sp._PAMC26508 0
Streptomyces_flavogriseus_ATCC_33331 0
Amycolatopsis_mediterranei_U32 0
Kribbella_flavida_DSM_17836 0
Verrucosispora_maris_AB-18-032 0
Isoptericola_variabilis_225 0
[Cellvibrio]_gilvus_ATCC_13127 0
Herpetosiphon_aurantiacus_DSM_785 0
Clostridium_clariflavum_DSM_19732 0
Butyrivibrio_fibrisolvens 1
Clostridium_cellulovorans_743B 0
Streptococcus_salivarius_57.I 0
Bacillus_halodurans_C-125 0
Chlorobium_luteolum_DSM_273 0
Chlorobium_phaeovibrioides_DSM_265 0
Saprospira_grandis_str._Lewin 0
Cyclobacterium_marinum_DSM_745 0
Marivirga_tractuosa_DSM_4126 0
Fluviicola_taffensis_DSM_16823 0
Owenweeksia_hongkongensis_DSM_17368 0
Zobellia_galactanivorans 0
Flavobacterium_indicum_GPTSA100-9 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1
Turneriella_parva_DSM_21527 0
Calditerrivibrio_nitroreducens_DSM_19672 0
Deferribacter_desulfuricans_SSM1 0
Desulfovibrio_aespoeensis_Aspo-2 1
Geobacter_uraniireducens_Rf4 0
Pelobacter_carbinolicus_DSM_2380 0
Myxococcus_fulvus_HW-1 1
Magnetococcus_marinus_MC-1 0
Magnetospirillum_magneticum_AMB-1 1
Azospirillum_sp._B510 0
Micavibrio_aeruginosavorus_ARL-13 0
Candidatus_Puniceispirillum_marinum_IMCC1322 0
Methylobacterium_chloromethanicum_CM4 0
Methylobacterium_extorquens_AM1 0
Methylobacterium_populi_BJ001 0
Methylobacterium_nodulans_ORS_2060 0
Vibrio_fischeri_MJ11 0
Vibrio_anguillarum_775 0
Colwellia_psychrerythraea_34H 0
Pseudoalteromonas_atlantica_T6c 0
Glaciecola_sp._4H-3-7+YE-5 0
Glaciecola_nitratireducens_FR1064 0
Pseudomonas_entomophila_L48 0
Methanococcoides_burtonii_DSM_6242 0
Methanoplanus_petrolearius_DSM_11571 1
Thermococcus_gammatolerans_EJ3 2
Pyrococcus_yayanosii_CH1 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   2
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1
Aspergillus_fumigatus_A1163_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Trypanosoma_brucei_Lister_427_v4.1 0
Arthrospira_platensis_NIES-39 0
Cyanothece_sp._ATCC_51142 0
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 0
Streptomyces_fulvissimus_DSM_40593 0
Streptomyces_venezuelae_ATCC_10712 0
Amycolatopsis_mediterranei_RB 0
Amycolatopsis_mediterranei_S699 0
Amycolatopsis_mediterranei_S699 0
Corynebacterium_glutamicum_SCgG2 0
Corynebacterium_glutamicum_SCgG1 0
Streptococcus_salivarius_CCHSS3 0
Streptococcus_salivarius_JIM8777 0
Paenibacillus_mucilaginosus_K02 0
Prevotella_dentalis_DSM_3688 0
Nonlabens_dokdonensis_DSW-6 0
Fibrobacter_succinogenes_subsp._succinogenes_S85 1
Myxococcus_stipitatus_DSM_14675 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 0
Micavibrio_aeruginosavorus_EPB 0
Methylobacterium_extorquens_DM4 0
Methylobacterium_extorquens_PA1 0
Vibrio_fischeri_ES114 0
Vibrio_anguillarum_Listonella_anguillarum_M3 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_69_3   (Small-eared galago)   3
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Rattus_norvegicus_69_3.4   (Norway rat)   3
Mus_musculus_69_38   (House mouse)   2
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   2
Ochotona_princeps_69   (American pika)   2
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   4
Bos_taurus_69_3.1   (Cattle)   2
Vicugna_pacos_69_1   (Alpaca)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_69_1   (Giant panda)   4
Canis_familiaris_69_3.1   (Dog)   3
Felis_catus_69   (Domestic cat)   2
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   2
Pteropus_vampyrus_69_1   (Large flying fox)   1
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Ornithorhynchus_anatinus_69_5   (Platypus)   0
Petromyzon_marinus_69_7.0   (Sea lamprey)   2
Meleagris_gallopavo_69_2   (Turkey)   1
Gallus_gallus_69_2   (Chicken)   2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Anolis_carolinensis_69_2.0   (Green anole)   2
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_69_1   (Coelacanth)   2
Gadus_morhua_69_1   (Atlantic cod)   3
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   2
Takifugu_rubripes_69_4   (Torafugu)   3
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   3
Oryzias_latipes_69_1   (Japanese medaka)   4
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   3
Oreochromis_niloticus_69_1.0   (Nile tilapia)   3
Danio_rerio_69_9   (Zebrafish)   5
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_69   (Vase tunicate)   1
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2
Homo_sapiens__(NCBI_version)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   2
Loa_loa_v3.3_(Request)   (Eye worm)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
Malus_x_domestica_(Duplicate)   (Apple)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
NCBI_plasmid_sequences_(Plasmids) 0
STRING_v9.0.5_(STRING) 95
TargetDB__(Targets) 0
Uniprot_2018_03_genome 4260
NCBI_viral_sequences_(Viral) 3
Protozoadb_2010_08_(Protozoadb) 0
NCBI_2017_08_genome 1050
UniProt__viral_sequences_(Viral) 1

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.