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  Home > SCOP hierarchy > Domain combination - 49899,_gap_,49265,49265,_gap_,52799,52799

Domain combinations for 49899,_gap_,49265,49265,_gap_,52799,52799 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49899 - Concanavalin A-like lectins/glucanases
49265 - Fibronectin type III
49265 - Fibronectin type III
52799 - (Phosphotyrosine protein) phosphatases II
52799 - (Phosphotyrosine protein) phosphatases II

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   3
Ochotona_princeps_76   (American pika)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Sorex_araneus_76_1   (European shrew)   0
Erinaceus_europaeus_76   (Western European hedgehog)   2
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Gadus_morhua_76_1   (Atlantic cod)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   5
Takifugu_rubripes_76_4   (Torafugu)   8
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Oryzias_latipes_76_1   (Japanese medaka)   1
Poecilia_formosa_76   (Amazon molly)   1
Astyanax_mexicanus_76   (Mexican tetra)   1

Longest transcript per gene
Genome     Number
Macaca_mulatta_69_1   (Rhesus monkey)   2
Ochotona_princeps_69   (American pika)   1
Felis_catus_69   (Domestic cat)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Sorex_araneus_69_1   (European shrew)   0
Erinaceus_europaeus_69   (Western European hedgehog)   2
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Gadus_morhua_69_1   (Atlantic cod)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   2
Takifugu_rubripes_69_4   (Torafugu)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oryzias_latipes_69_1   (Japanese medaka)   1

Others
Genome     Number
NCBI_2017_08_genome 57
STRING_v9.0.5_(STRING) 7
Uniprot_2018_03_genome 800

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.