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Domain combinations for 50044,_gap_,48371,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50044 - SH3-domain
48371 - ARM repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   4
Pan_troglodytes_76_2.1.4   (Chimpanzee)   4
Gorilla_gorilla_76_3.1   (Western gorilla)   4
Pongo_abelii_76_2   (Sumatran orangutan)   2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3
Papio_anubis_76   (Olive baboon)   2
Macaca_mulatta_76_1   (Rhesus monkey)   4
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   3
Otolemur_garnettii_76_3   (Small-eared galago)   3
Microcebus_murinus_76_1   (Gray mouse lemur)   2
Rattus_norvegicus_76_5.0   (Norway rat)   5
Mus_musculus_76_38   (House mouse)   4
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   2
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   3
Cavia_porcellus_76_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_76_2   (Rabbit)   4
Ochotona_princeps_76   (American pika)   2
Tupaia_belangeri_76   (Northern tree shrew)   1
Bos_taurus_76_3.1   (Cattle)   3
Ovis_aries_76_3.1   (Sheep)   4
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   2
Canis_familiaris_76_3.1   (Dog)   6
Felis_catus_76_6.2   (Domestic cat)   3
Equus_caballus_76_2   (Horse)   3
Myotis_lucifugus_76_2.0   (Little brown bat)   2
Pteropus_vampyrus_76_1   (Large flying fox)   2
Procavia_capensis_76_1   (Cape rock hyrax)   1
Loxodonta_africana_76_3   (African savanna elephant)   6
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   2
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2
Meleagris_gallopavo_76_2   (Turkey)   1
Gallus_gallus_76_4   (Chicken)   3
Anas_platyrhynchos_76_1.0   (Mallard)   4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   5
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   4
Anolis_carolinensis_76_2.0   (Green anole)   4
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_76_1   (Coelacanth)   2
Lepisosteus_oculatus_76   (Spotted gar)   3
Gadus_morhua_76_1   (Atlantic cod)   2
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   3
Takifugu_rubripes_76_4   (Torafugu)   11
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   3
Oryzias_latipes_76_1   (Japanese medaka)   3
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   2
Poecilia_formosa_76   (Amazon molly)   5
Oreochromis_niloticus_76_1.0   (Nile tilapia)   5
Astyanax_mexicanus_76   (Mexican tetra)   3
Danio_rerio_76_9   (Zebrafish)   2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_76   (Vase tunicate)   1
Lottia_gigantea_   (Owl limpet)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Drosophila_grimshawi_1.3 2
Drosophila_willistoni_1.3 1
Drosophila_persimilis_1.3 1
Drosophila_yakuba_1.3 1
Drosophila_ananassae_1.3 1
Anopheles_darlingi_22   (American malaria mosquito)   1
Rhodnius_prolixus_22 2
Strigamia_maritima_22 1
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 2
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   1
Caenorhabditis_briggsae_2 1
Amphimedon_queenslandica 1
Monosiga_brevicollis_ 1
Capsaspora_owczarzaki_ATCC_30864_ 1
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 1
Magnaporthe_grisea_70-15_ 1
Neurospora_tetrasperma_ 0
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 1
Glomerella_graminicola_22 1
Fusarium_graminearum_ 1
Nectria_haematococca_mpVI_ 1
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 1
Trichoderma_citrinoviride_v1.0 1
Trichoderma_reesei_1.2 1
Trichoderma_virens_Gv29-8_ 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Sclerotinia_sclerotiorum_ 1
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 0
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Alternaria_brassicicola_ 1
Cochliobolus_lunatus_m118_v2.0 1
Pyrenophora_teres_f._teres_22 1
Pyrenophora_tritici-repentis_ 1
Aspergillus_zonatus_v1.0 1
Aspergillus_brasiliensis_v1.0 1
Aspergillus_carbonarius_ITEM_5010_ 1
Dictyostelium_purpureum_ 1
Trichomonas_vaginalis_ 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   5
Pan_troglodytes_69_2.1.4   (Chimpanzee)   4
Gorilla_gorilla_69_3.1   (Western gorilla)   3
Pongo_abelii_69_2   (Sumatran orangutan)   2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3
Macaca_mulatta_69_1   (Rhesus monkey)   4
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   3
Otolemur_garnettii_69_3   (Small-eared galago)   3
Microcebus_murinus_69_1   (Gray mouse lemur)   2
Rattus_norvegicus_69_3.4   (Norway rat)   4
Mus_musculus_69_38   (House mouse)   4
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   2
Cavia_porcellus_69_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_69_2   (Rabbit)   3
Ochotona_princeps_69   (American pika)   2
Tupaia_belangeri_69   (Northern tree shrew)   1
Bos_taurus_69_3.1   (Cattle)   3
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_69_1   (Giant panda)   2
Canis_familiaris_69_3.1   (Dog)   4
Equus_caballus_69_2   (Horse)   2
Myotis_lucifugus_69_2.0   (Little brown bat)   2
Pteropus_vampyrus_69_1   (Large flying fox)   2
Procavia_capensis_69_1   (Cape rock hyrax)   1
Loxodonta_africana_69_3   (African savanna elephant)   5
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   2
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2
Meleagris_gallopavo_69_2   (Turkey)   1
Gallus_gallus_69_2   (Chicken)   4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3
Anolis_carolinensis_69_2.0   (Green anole)   2
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1
Latimeria_chalumnae_69_1   (Coelacanth)   2
Gadus_morhua_69_1   (Atlantic cod)   2
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Takifugu_rubripes_69_4   (Torafugu)   2
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   3
Oryzias_latipes_69_1   (Japanese medaka)   3
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   2
Oreochromis_niloticus_69_1.0   (Nile tilapia)   4
Danio_rerio_69_9   (Zebrafish)   1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_69   (Vase tunicate)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   5
Homo_sapiens__(NCBI_version)   (Human)   4
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   4
Protozoadb_2010_08_(Protozoadb) 2
STRING_v9.0.5_(STRING) 73
Uniprot_2018_03_genome 6174
NCBI_2017_08_genome 1533
TargetDB__(Targets) 3

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