SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for 50156,52540,51045,51045,_gap_,50156,_gap_,50156,_gap_,50156,_gap_,50156,_gap_,50156 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50156 - PDZ domain-like
52540 - P-loop containing nucleoside triphosphate hydrolases
51045 - WW domain
51045 - WW domain
50156 - PDZ domain-like
50156 - PDZ domain-like
50156 - PDZ domain-like
50156 - PDZ domain-like
50156 - PDZ domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Ochotona_princeps_76   (American pika)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   0
Lepisosteus_oculatus_76   (Spotted gar)   0
Gadus_morhua_76_1   (Atlantic cod)   1
Takifugu_rubripes_76_4   (Torafugu)   2
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Poecilia_formosa_76   (Amazon molly)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Danio_rerio_76_9   (Zebrafish)   0

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Ochotona_princeps_69   (American pika)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   0
Gadus_morhua_69_1   (Atlantic cod)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Danio_rerio_69_9   (Zebrafish)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
STRING_v9.0.5_(STRING) 2
Uniprot_2018_03_genome 938
NCBI_2017_08_genome 78

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]