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  Home > SCOP hierarchy > Domain combination - 50156,52540,51045,_gap_,50156,_gap_,50156,50156

Domain combinations for 50156,52540,51045,_gap_,50156,_gap_,50156,50156 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50156 - PDZ domain-like
52540 - P-loop containing nucleoside triphosphate hydrolases
51045 - WW domain
50156 - PDZ domain-like
50156 - PDZ domain-like
50156 - PDZ domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Lepisosteus_oculatus_76   (Spotted gar)   1

Longest transcript per gene
Genome     Number
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
STRING_v9.0.5_(STRING) 0
NCBI_2017_08_genome 0
Uniprot_2018_03_genome 31

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.