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  Home > SCOP hierarchy > Domain combination - 50494,_gap_

Domain combinations for 50494,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50494 - Trypsin-like serine proteases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   13
Pan_troglodytes_76_2.1.4   (Chimpanzee)   7
Gorilla_gorilla_76_3.1   (Western gorilla)   10
Pongo_abelii_76_2   (Sumatran orangutan)   7
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   9
Papio_anubis_76   (Olive baboon)   11
Macaca_mulatta_76_1   (Rhesus monkey)   15
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   14
Otolemur_garnettii_76_3   (Small-eared galago)   11
Microcebus_murinus_76_1   (Gray mouse lemur)   6
Rattus_norvegicus_76_5.0   (Norway rat)   13
Mus_musculus_76_38   (House mouse)   21
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   5
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   13
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   8
Cavia_porcellus_76_3   (Domestic guinea pig)   10
Oryctolagus_cuniculus_76_2   (Rabbit)   11
Ochotona_princeps_76   (American pika)   9
Tupaia_belangeri_76   (Northern tree shrew)   4
Sus_scrofa_76_10.2   (Pig)   3
Bos_taurus_76_3.1   (Cattle)   13
Ovis_aries_76_3.1   (Sheep)   13
Vicugna_pacos_76_1   (Alpaca)   6
Tursiops_truncatus_76_1   (Bottlenose dolphin)   7
Mustela_putorius_furo_76_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_76_1   (Giant panda)   8
Canis_familiaris_76_3.1   (Dog)   5
Felis_catus_76_6.2   (Domestic cat)   10
Equus_caballus_76_2   (Horse)   12
Myotis_lucifugus_76_2.0   (Little brown bat)   6
Pteropus_vampyrus_76_1   (Large flying fox)   8
Sorex_araneus_76_1   (European shrew)   2
Erinaceus_europaeus_76   (Western European hedgehog)   6
Procavia_capensis_76_1   (Cape rock hyrax)   8
Loxodonta_africana_76_3   (African savanna elephant)   9
Echinops_telfairi_76   (Small Madagascar hedgehog)   6
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   13
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   4
Macropus_eugenii_76_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   10
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   13
Ornithorhynchus_anatinus_76_5   (Platypus)   8
Saccoglossus_kowalevskii_v3.0 3
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Meleagris_gallopavo_76_2   (Turkey)   3
Gallus_gallus_76_4   (Chicken)   4
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   8
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   5
Anolis_carolinensis_76_2.0   (Green anole)   7
Xenopus_laevis_   (African clawed frog)   20
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   21
Latimeria_chalumnae_76_1   (Coelacanth)   7
Lepisosteus_oculatus_76   (Spotted gar)   10
Gadus_morhua_76_1   (Atlantic cod)   3
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   9
Takifugu_rubripes_76_4   (Torafugu)   18
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   12
Oryzias_latipes_76_1   (Japanese medaka)   12
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   10
Poecilia_formosa_76   (Amazon molly)   6
Oreochromis_niloticus_76_1.0   (Nile tilapia)   18
Astyanax_mexicanus_76   (Mexican tetra)   4
Danio_rerio_76_9   (Zebrafish)   19
Oikopleura_dioica 30
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   4
Ciona_intestinalis_76   (Vase tunicate)   4
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3
Adineta_vaga 36
Octopus_bimaculoides_280 2
Crassostrea_gigas_22   (Pacific oyster)   3
Lottia_gigantea_   (Owl limpet)   0
Helobdella_robusta_ 1
Capitella_sp._I_ 0
Danaus_plexippus_OGS1.0   (Monarch butterfly)   21
Heliconius_melpomene_   (Postman butterfly)   12
Bombyx_mori_   (Domestic silkworm)   18
Nasonia_vitripennis_   (Jewel wasp)   9
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   5
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   4
Lucilia_cuprina   (Australian sheep blowfly)   4
Drosophila_grimshawi_1.3 2
Drosophila_willistoni_1.3 7
Drosophila_pseudoobscura_2.13 12
Drosophila_persimilis_1.3 6
Drosophila_suzukii 10
Drosophila_yakuba_1.3 16
Drosophila_simulans_1.3 16
Drosophila_sechellia_1.3 12
Drosophila_melanogaster_76_5   (Fruit fly)   14
Drosophila_erecta_1.3 13
Drosophila_ananassae_1.3 9
Drosophila_virilis_1.2 8
Drosophila_mojavensis_1.3 2
Megaselia_scalaris_22 5
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   28
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   31
Anopheles_darlingi_22   (American malaria mosquito)   14
Anopheles_gambiae_49_3j   (African malaria mosquito)   10
Tribolium_castaneum_3.0   (Red flour beetle)   4
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   1
Rhodnius_prolixus_22 9
Daphnia_pulex_   (Common water flea)   18
Strigamia_maritima_22 5
Sarcoptes_scabiei 5
Tetranychus_urticae_   (Two-spotted spider mite)   10
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   4
Pristionchus_pacificus_ 2
Meloidogyne_incognita_   (Southern root-knot nematode)   5
Meloidogyne_hapla_ 2
Onchocerca_volvulus_22 0
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   2
Caenorhabditis_briggsae_2 4
Trichinella_spiralis_22 18
Hymenolepis_microstoma_ 0
Echinococcus_multilocularis_ 0
Echinococcus_granulosus_ 0
Taenia_solium_   (Pork tapeworm)   0
Schistosoma_mansoni_ 0
Mnemiopsis_leidyi   (Sea walnut)   4
Acropora_digitifera_v1.0 6
Nematostella_vectensis_1.0   (Starlet sea anemone)   4
Hydra_vulgaris 4
Amphimedon_queenslandica 1
Trichoplax_adhaerens_ 0
Monosiga_brevicollis_ 1
Sphaeroforma_arctica_JP610_ 12
Capsaspora_owczarzaki_ATCC_30864_ 0
Conidiobolus_coronatus_NRRL28638_v1.0 0
Mortierella_verticillata_NRRL_6337_ 0
Phycomyces_blakesleeanus_ 2
Rhizopus_oryzae_RA_99-880_ 1
Mucor_circinelloides_ 1
Rhizomucor_miehei_CAU432_ 1
Sporisorium_reilianum_22 0
Ustilago_maydis_ 1
Mixia_osmundae_IAM_14324_v1.0 0
Rhodotorula_graminis_WP1_v1.0 0
Sporobolomyces_roseus_IAM_13481_ 0
Piloderma_croceum_F_1598_v1.0 0
Coniophora_puteana 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Scleroderma_citrinum_Foug_A_v1.0 0
Coprinopsis_cinerea_okayama7_130_v3 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1
Galerina_marginata_v1.0 0
Hebeloma_cylindrosporum_h7_v2.0 1
Laccaria_bicolor_S238N-H82_ 1
Agaricus_bisporus_var._bisporus_ 0
Schizophyllum_commune_ 0
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Heterobasidion_annosum_ 0
Punctularia_strigosozonata_v1.0 0
Sebacina_vermifera_MAFF_305830_v1.0 0
Tulasnella_calospora_AL13/4D_v1.0 1
Postia_placenta_ 0
Wolfiporia_cocos_MD-104_SS10__v1.0 0
Fomitopsis_pinicolav1.0 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 2
Dichomitus_squalens 1
Daldinia_eschscholzii_EC12_v1.0 0
Apiospora_montagnei_NRRL_25634_v1.0 0
Magnaporthe_poae_ATCC_64411_22 0
Magnaporthe_grisea_70-15_ 0
Podospora_anserina_ 2
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 0
Neurospora_tetrasperma_ 0
Neurospora_discreta_FGSC_8579_ 0
Neurospora_crassa_OR74A_ 0
Verticillium_albo-atrum_VaMs.102_ 0
Verticillium_dahliae_VdLs.17_ 0
Glomerella_graminicola_22 0
Fusarium_graminearum_ 0
Nectria_haematococca_mpVI_ 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2
Fusarium_verticillioides_7600_ 2
Trichoderma_asperellum_CBS_433.97_v1.0 0
Trichoderma_atroviride_ 0
Trichoderma_citrinoviride_v1.0 2
Trichoderma_reesei_1.2 0
Trichoderma_virens_Gv29-8_ 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 0
Trichoderma_harzianum_CBS_226.95_v1.0 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   0
Alternaria_brassicicola_ 0
Cochliobolus_lunatus_m118_v2.0 1
Pyrenophora_teres_f._teres_22 0
Stagonospora_nodorum_ 1
Mycosphaerella_graminicola_IPO323_ 0
Dothistroma_septosporum 1
Septoria_musiva_v1.0 0
Coccidioides_posadasii_RMSCC_3488_ 0
Coccidioides_immitis_RS_ 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Microsporum_canis_CBS_113480_ 1
Trichophyton_equinum_CBS_127.97_ 0
Trichophyton_verrucosum_HKI_0517_ 1
Arthroderma_benhamiae_CBS_112371_ 1
Trichophyton_tonsurans_CBS_112818_ 0
Trichophyton_rubrum_CBS_118892_ 1
Uncinocarpus_reesii_1704_ 0
Aspergillus_zonatus_v1.0 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 0
Penicillium_chrysogenum_v1.0 0
Aspergillus_acidus_v1.0 1
Aspergillus_fumigatus_Af293 1
Aspergillus_nidulans_FGSC_A4_ 0
Aspergillus_glaucus 0
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_terreus_NIH2624_ 0
Aspergillus_tubingensis_v1.0 1
Aspergillus_wentii_v1.0 1
Aspergillus_oryzae_RIB40_ 1
Aspergillus_flavus_NRRL3357_ 1
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Pichia_membranifaciensv1.0 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Candida_dubliniensis_CD36_ 0
Candida_parapsilosis_ 0
Candida_albicans_SC5314 0
Babjeviella_inositovora_NRRL_Y-12698_v1.0 0
Pichia_stipitis_CBS_6054_ 0
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 0
Debaromyces_hansenii 0
Yarrowia_lipolytica_CLIB122 0
Candida_lusitaniae_ATCC_42720_ 0
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Schizosaccharomyces_cryophilus_OY26_22 0
Schizosaccharomyces_octosporus_yFS286_ 0
Schizosaccharomyces_japonicus_yFS275_ 0
Schizosaccharomyces_pombe   (Fission yeast)   0
Allomyces_macrogynus_ATCC_38327_ 0
Spizellomyces_punctatus_DAOM_BR117_ 0
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Selaginella_moellendorffii_ 0
Pinus_taeda   (Loblolly pine)   5
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 1
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   1
Thellungiella_halophila_v173 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1
Arabidopsis_thaliana_10   (Thale cress)   1
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   3
Phaseolus_vulgaris_v186   (French bean)   1
Glycine_max_v109   (Soybean)   1
Cucumis_sativus_v122   (Cucumber)   1
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   4
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   3
Manihot_esculenta_v147   (Cassava)   6
Populus_trichocarpa_v156   (Black cottonwood)   1
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Solanum_lycopersicum_v.2.3   (Tomato)   2
Solanum_tuberosum_   (Potato)   3
Actinidia_chinensis_Hongyang_ 0
Aquilegia_coerulea_v195 1
Triticum_urartu_22 2
Triticum_aestivum_22   (Bread wheat)   10
Aegilops_tauschii_22 6
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_barthii_22   (African wild rice)   3
Oryza_meridionalis_22 11
Oryza_glumaepatula_22 1
Oryza_glaberrima   (African rice)   4
Oryza_punctata_22 4
Oryza_nivara_22 10
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   16
Oryza_sativa_v193   (Rice)   14
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Panicum_virgatum_v202   (Switchgrass)   9
Setaria_italica_v164   (Foxtail millet)   6
Zea_mays_subsp._mays_   (Maize)   2
Zea_mays_v181   (Maize)   1
Sorghum_bicolor_   (Sorghum)   2
Musa_balbisiana   (Balbis banana)   1
Musa_acuminata_22   (Wild Malaysian banana)   3
Amborella_trichopoda_22 0
Physcomitrella_patens 0
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Chlorella_variabilis_sp._NC64A_ 8
Chlorella_vulgaris_ 1
Volvox_carteri_f._nagariensis_ 3
Volvox_carteri_v199 2
Chlamydomonas_reinhardtii_4.0 1
Ostreococcus_sp._RCC809_ 1
Bathycoccus_prasinos_ 0
Micromonas_sp._RCC299_ 0
Micromonas_pusilla_CCMP1545_v3.0 1
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 3
Bigelowiella_natans_CCMP2755_22 1
Cyanophora_paradoxa_ 1
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Trypanosoma_vivax_ 1
Trypanosoma_congolense_2.4 0
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 1
Aureococcus_anophagefferens_ 1
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 6
Pythium_ultimum_v1.7-2 4
Pythium_aphanidermatum_DAOM_BR444_22 3
Pythium_irregulare_DAOM_BR486_22 8
Pythium_vexans_DAOM_BR484_22 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   2
Phytophthora_sojae_1.1 6
Phytophthora_infestans_T30-4_ 4
Phytophthora_capsici_ 4
Hyaloperonospora_arabidopsidis_22 2
Phaeodactylum_tricornutumCCAP_1055/1 3
Fragilariopsis_cylindrus 15
Thalassiosira_pseudonana_CCMP1335 3
Perkinsus_marinus_ATCC_50983_ 0
Paramecium_tetraurelia_ 0
Tetrahymena_thermophila_SB210_1_ 0
Neospora_caninum 0
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Theileria_parva__ 0
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 0
Symbiodinium_minutum_clade_B1_v1.2 6
Naegleria_gruberi_ 6
Guillardia_theta_CCMP2712_v1.0_ 2
Emiliania_huxleyi_CCMP1516_ 14
Thermobaculum_terrenum_ATCC_BAA-798 1
Leptolyngbya_sp._PCC_7376 1
Pseudanabaena_sp._PCC_7367 2
Acaryochloris_marina_MBIC11017 5
Thermosynechococcus_elongatus_BP-1 1
Synechococcus_sp._PCC_7502 1
Synechococcus_sp._CC9311 1
Synechococcus_elongatus_PCC_7942 1
Microcoleus_sp._PCC_7113 2
Trichodesmium_erythraeum_IMS101 3
Gloeocapsa_sp._PCC_7428 0
Halothece_sp._PCC_7418 1
Microcystis_aeruginosa_NIES-843 3
Gloeobacter_violaceus_PCC_7421 0
Rivularia_sp._PCC_7116 2
Calothrix_sp._PCC_7507 1
Nostoc_punctiforme_PCC_73102 1
Anabaena_sp._90 2
Candidatus_Phytoplasma_mali 0
Aster_yellows_witches'-broom_phytoplasma_AYWB 0
Onion_yellows_phytoplasma_OY-M 0
Ureaplasma_parvum_serovar_3_str._ATCC_27815 0
Ureaplasma_urealyticum_serovar_10_str._ATCC_33699 0
Mycoplasma_haemocanis_str._Illinois 0
Mycoplasma_wenyonii_str._Massachusetts 0
Mycoplasma_suis_KI3806 0
Mycoplasma_conjunctivae_HRC/581 0
Mycoplasma_haemofelis_Ohio2 1
Mycoplasma_penetrans_HF-2 0
Mycoplasma_pulmonis_UAB_CTIP 0
Mycoplasma_pneumoniae_309 0
Mycoplasma_hyorhinis_GDL-1 0
Mycoplasma_genitalium_G37 0
Mycoplasma_gallisepticum_str._F 0
Conexibacter_woesei_DSM_14684 3
Thermobispora_bispora_DSM_43833 0
Nakamurella_multipartita_DSM_44233 0
Geodermatophilus_obscurus_DSM_43160 0
Catenulispora_acidiphila_DSM_44928 1
Stackebrandtia_nassauensis_DSM_44728 0
Frankia_symbiont_of_Datisca_glomerata 0
Thermobifida_fusca_YX 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 2
Thermomonospora_curvata_DSM_43183 1
Streptosporangium_roseum_DSM_43021 0
Kitasatospora_setae_KM-6054 2
Streptomyces_coelicolor_A3(2) 4
Streptomyces_griseus_subsp._griseus_NBRC_13350 2
Streptomyces_bingchenggensis_BCW-1 2
Streptomyces_violaceusniger_Tu_4113 2
Streptomyces_avermitilis_MA-4680 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2
Streptomyces_scabiei_87.22 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 5
Actinosynnema_mirum_DSM_43827 2
Pseudonocardia_dioxanivorans_CB1190 0
Amycolatopsis_mediterranei_U32 2
Kribbella_flavida_DSM_17836 0
Nocardioides_sp._JS614 1
Microlunatus_phosphovorus_NM-1 1
Salinispora_arenicola_CNS-205 1
Salinispora_tropica_CNB-440 1
Verrucosispora_maris_AB-18-032 0
Micromonospora_sp._L5 0
Micromonospora_aurantiaca_ATCC_27029 0
Actinoplanes_sp._N902-109 1
Actinoplanes_sp._SE50/110 0
Actinoplanes_missouriensis_431 3
Gordonia_bronchialis_DSM_43247 0
Rhodococcus_jostii_RHA1 0
Rhodococcus_opacus_B4 0
Rhodococcus_erythropolis_PR4 0
Mycobacterium_abscessus_ATCC_19977 0
Mycobacterium_sp._JLS 0
Corynebacterium_resistens_DSM_45100 1
Corynebacterium_aurimucosum_ATCC_700975 1
Corynebacterium_ulcerans_0102 4
Corynebacterium_urealyticum_DSM_7109 1
Corynebacterium_jeikeium_K411 1
Corynebacterium_pseudotuberculosis_316 1
Corynebacterium_glutamicum_R 2
Corynebacterium_diphtheriae_NCTC_13129 3
Beutenbergia_cavernae_DSM_12333 0
Leifsonia_xyli_subsp._xyli_str._CTCB07 0
Microbacterium_testaceum_StLB037 0
Isoptericola_variabilis_225 0
Cellulomonas_flavigena_DSM_20109 3
Cellulomonas_fimi_ATCC_484 0
[Cellvibrio]_gilvus_ATCC_13127 0
Arthrobacter_phenanthrenivorans_Sphe3 0
Arthrobacter_chlorophenolicus_A6 1
Arthrobacter_aurescens_TC1 1
Arthrobacter_arilaitensis_Re117 0
Arthrobacter_sp._Rue61a 0
Arthrobacter_sp._FB24 0
Micrococcus_luteus_NCTC_2665 1
Bifidobacterium_bifidum_S17 1
Arcanobacterium_haemolyticum_DSM_20595 1
Mobiluncus_curtisii_ATCC_43063 4
Actinomyces_sp._F0330 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1
Thermomicrobium_roseum_DSM_5159 0
Sphaerobacter_thermophilus_DSM_20745 0
Herpetosiphon_aurantiacus_DSM_785 0
Roseiflexus_sp._RS-1 1
Chloroflexus_aggregans_DSM_9485 1
Deinococcus_gobiensis_I-0 0
Deinococcus_maricopensis_DSM_21211 0
Deinococcus_proteolyticus_MRP 1
Deinococcus_radiodurans_R1 0
Thermus_scotoductus_SA-01 0
Veillonella_parvula_DSM_2008 1
Megasphaera_elsdenii_DSM_20460 1
Acidaminococcus_intestini_RyC-MR95 1
Acidaminococcus_fermentans_DSM_20731 1
Selenomonas_sputigena_ATCC_35185 1
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 2
Clostridium_cellulolyticum_H10 1
Clostridium_thermocellum_ATCC_27405 0
Dehalobacter_sp._DCA 0
Dehalobacter_sp._CF 0
Desulfotomaculum_reducens_MI-1 0
Desulfotomaculum_carboxydivorans_CO-1-SRB 0
Butyrivibrio_fibrisolvens 0
Heliobacterium_modesticaldum_Ice1 0
Clostridium_kluyveri_DSM_555 1
Clostridium_beijerinckii_NCIMB_8052 0
Clostridium_tetani_E88 1
Clostridium_cellulovorans_743B 1
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 1
Thermodesulfobium_narugense_DSM_14796 1
Carboxydothermus_hydrogenoformans_Z-2901 0
Moorella_thermoacetica_ATCC_39073 1
Streptococcus_pseudopneumoniae_IS7493 0
Streptococcus_mitis_B6 0
Streptococcus_pneumoniae_P1031 0
Streptococcus_oralis_Uo5 0
Exiguobacterium_sp._AT1b 1
Paenibacillus_sp._JDR-2 1
Paenibacillus_polymyxa_M1 0
Listeria_welshimeri_serovar_6b_str._SLCC5334 0
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 0
Listeria_ivanovii_subsp._ivanovii_PAM_55 0
Geobacillus_thermoglucosidasius_C56-YS93 0
Lysinibacillus_sphaericus_C3-41 1
Anoxybacillus_flavithermus_WK1 0
Geobacillus_thermodenitrificans_NG80-2 0
Bacillus_cellulosilyticus_DSM_2522 1
Staphylococcus_aureus_subsp._aureus_JH1 0
Staphylococcus_aureus 1
Melioribacter_roseus_P3M 0
Ignavibacterium_album_JCM_16511 1
Chlorobium_limicola_DSM_245 0
Haliscomenobacter_hydrossis_DSM_1100 0
Saprospira_grandis_str._Lewin 0
Niastella_koreensis_GR20-10 0
Chitinophaga_pinensis_DSM_2588 0
Salinibacter_ruber_M8 0
Rhodothermus_marinus_DSM_4252 0
Flexibacter_litoralis_DSM_6794 0
Cyclobacterium_marinum_DSM_745 1
Fibrella_aestuarina 0
Dyadobacter_fermentans_DSM_18053 2
Cytophaga_hutchinsonii_ATCC_33406 1
Spirosoma_linguale_DSM_74 1
Runella_slithyformis_DSM_19594 0
Parabacteroides_distasonis_ATCC_8503 1
Tannerella_forsythia_ATCC_43037 1
Paludibacter_propionicigenes_WB4 0
Odoribacter_splanchnicus_DSM_20712 0
Bacteroides_sp._CF50 0
Prevotella_melaninogenica_ATCC_25845 0
Prevotella_intermedia_17 0
Prevotella_denticola_F0289 0
Prevotella_ruminicola_23 1
Porphyromonas_asaccharolytica_DSM_20707 0
Porphyromonas_gingivalis_ATCC_33277 0
Alistipes_finegoldii_DSM_17242 0
Bacteroides_salanitronis_DSM_18170 0
Bacteroides_helcogenes_P_36-108 0
Bacteroides_vulgatus_ATCC_8482 0
Bacteroides_thetaiotaomicron_VPI-5482 0
Bacteroides_fragilis_YCH46 0
Pedobacter_saltans_DSM_12145 0
Solitalea_canadensis_DSM_3403 0
Pedobacter_heparinus_DSM_2366 0
Sphingobacterium_sp._21 0
Fluviicola_taffensis_DSM_16823 0
Owenweeksia_hongkongensis_DSM_17368 0
Zunongwangia_profunda_SM-A87 1
Lacinutrix_sp._5H-3-7-4 0
Aequorivita_sublithincola_DSM_14238 0
Flavobacteriaceae_bacterium_3519-10 0
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 0
Ornithobacterium_rhinotracheale_DSM_15997 0
Capnocytophaga_canimorsus_Cc5 0
Capnocytophaga_ochracea_DSM_7271 0
Weeksella_virosa_DSM_16922 0
Flavobacterium_indicum_GPTSA100-9 0
Flavobacterium_psychrophilum_JIP02/86 0
Flavobacterium_branchiophilum_FL-15 0
Flavobacterium_columnare_ATCC_49512 0
Flavobacterium_johnsoniae_UW101 1
Candidatus_Protochlamydia_amoebophila_UWE25 3
Parachlamydia_acanthamoebae_UV-7 2
Simkania_negevensis_Z 0
Phycisphaera_mikurensis_NBRC_102666 1
Isosphaera_pallida_ATCC_43644 1
Planctomyces_brasiliensis_DSM_5305 2
Planctomyces_limnophilus_DSM_3776 1
Rhodopirellula_baltica_SH_1 1
Pirellula_staleyi_DSM_6068 2
Coraliomargarita_akajimensis_DSM_45221 0
Opitutus_terrae_PB90-1 0
Thermovirga_lienii_DSM_17291 1
Aminobacterium_colombiense_DSM_12261 1
Turneriella_parva_DSM_21527 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 1
Leptospira_interrogans_serovar_Lai_str._IPAV 1
Treponema_azotonutricium_ZAS-9 1
Treponema_brennaborense_DSM_12168 1
Treponema_denticola_ATCC_35405 2
Denitrovibrio_acetiphilus_DSM_12809 1
Mesotoga_prima_MesG1.Ag.4.2 1
Elusimicrobium_minutum_Pei191 2
Caldisericum_exile_AZM16c01 0
Candidatus_Chloracidobacterium_thermophilum_B 0
Candidatus_Solibacter_usitatus_Ellin6076 1
Granulicella_mallensis_MP5ACTX8 0
Candidatus_Koribacter_versatilis_Ellin345 0
Acidobacterium_capsulatum_ATCC_51196 0
Candidatus_Nitrospira_defluvii 2
Streptobacillus_moniliformis_DSM_12112 0
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 0
Candidatus_Methylomirabilis_oxyfera 0
Candidatus_Saccharimonas_aalborgensis 0
Bacteriovorax_marinus_SJ 0
Bdellovibrio_bacteriovorus_HD100 1
Sulfurovum_sp._NBC37-1 1
Desulfomonile_tiedjei_DSM_6799 0
Syntrophobacter_fumaroxidans_MPOB 1
Desulfobulbus_propionicus_DSM_2032 2
Desulfobacterium_autotrophicum_HRM2 0
Desulfococcus_oleovorans_Hxd3 1
Desulfovibrio_magneticus_RS-1 0
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 0
Desulfovibrio_africanus_str._Walvis_Bay 0
Haliangium_ochraceum_DSM_14365 4
Sorangium_cellulosum_'So_ce_56' 8
Anaeromyxobacter_sp._Fw109-5 0
Anaeromyxobacter_dehalogenans_2CP-1 0
Stigmatella_aurantiaca_DW4/3-1 3
Corallococcus_coralloides_DSM_2259 4
Myxococcus_xanthus_DK_1622 2
Myxococcus_fulvus_HW-1 4
Dechloromonas_aromatica_RCB 0
Neisseria_meningitidis_alpha14 0
Methylibium_petroleiphilum_PM1 1
Thiomonas_arsenitoxydans 1
Thiomonas_intermedia_K12 1
Leptothrix_cholodnii_SP-6 1
Burkholderia_xenovorans_LB400 0
Cupriavidus_metallidurans_CH34 2
Cupriavidus_necator_N-1 1
Ralstonia_pickettii_12D 1
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_vietnamiensis_G4 0
Burkholderia_gladioli_BSR3 1
Burkholderia_glumae_BGR1 1
Verminephrobacter_eiseniae_EF01-2 0
Ramlibacter_tataouinensis_TTB310 1
Delftia_sp._Cs1-4 0
Delftia_acidovorans_SPH-1 0
Polaromonas_naphthalenivorans_CJ2 0
Acidovorax_sp._KKS102 0
Acidovorax_citrulli_AAC00-1 0
Acidovorax_avenae_subsp._avenae_ATCC_19860 0
Collimonas_fungivorans_Ter331 0
Herbaspirillum_seropedicae_SmR1 0
Achromobacter_xylosoxidans 0
Magnetococcus_marinus_MC-1 0
Parvularcula_bermudensis_HTCC2503 0
Asticcacaulis_excentricus_CB_48 2
Brevundimonas_subvibrioides_ATCC_15264 1
Caulobacter_sp._K31 2
Caulobacter_crescentus_NA1000 1
Caulobacter_segnis_ATCC_21756 2
Phenylobacterium_zucineum_HLK1 3
Erythrobacter_litoralis_HTCC2594 1
Sphingopyxis_alaskensis_RB2256 1
Novosphingobium_aromaticivorans_DSM_12444 1
Sphingobium_sp._SYK-6 1
Sphingobium_japonicum_UT26S 2
Sphingobium_chlorophenolicum_L-1 2
Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 0
Maricaulis_maris_MCS10 0
Hirschia_baltica_ATCC_49814 2
Hyphomonas_neptunium_ATCC_15444 0
Dinoroseobacter_shibae_DFL_12 1
Pseudovibrio_sp._FO-BEG1 0
Jannaschia_sp._CCS1 0
Ruegeria_pomeroyi_DSS-3 0
Roseobacter_litoralis_Och_149 1
Rhodobacter_capsulatus_SB_1003 0
Rhodospirillum_photometricum_DSM_122 0
Magnetospirillum_magneticum_AMB-1 0
Rhodospirillum_centenum_SW 0
Rhodospirillum_rubrum_F11 1
Azospirillum_lipoferum_4B 1
Azospirillum_sp._B510 0
Azospirillum_brasilense_Sp245 1
Methylobacterium_chloromethanicum_CM4 0
Methylobacterium_populi_BJ001 0
Methylobacterium_nodulans_ORS_2060 0
Sinorhizobium_fredii_NGR234 0
Rhizobium_etli_CIAT_652 0
Rhizobium_leguminosarum_bv._viciae_3841 0
Mesorhizobium_opportunistum_WSM2075 0
Mesorhizobium_loti_MAFF303099 1
Methylocella_silvestris_BL2 0
Rhodomicrobium_vannielii_ATCC_17100 1
Rhodopseudomonas_palustris_BisA53 1
Nitrobacter_winogradskyi_Nb-255 1
Nitrobacter_hamburgensis_X14 3
Bradyrhizobium_sp._ORS_278 3
Methylocystis_sp._SC2 0
Saccharophagus_degradans_2-40 0
Teredinibacter_turnerae_T7901 0
Cellvibrio_japonicus_Ueda107 1
Tolumonas_auensis_DSM_9187 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1
Vibrio_fischeri_MJ11 1
Vibrio_sp._Ex25 3
Vibrio_harveyi_ATCC_BAA-1116 1
Vibrio_parahaemolyticus_RIMD_2210633 1
Vibrio_splendidus_LGP32 2
Vibrio_anguillarum_775 0
Vibrio_furnissii_NCTC_11218 0
Vibrio_vulnificus_MO6-24/O 3
Vibrio_cholerae_O395 3
Photobacterium_profundum_SS9 3
Psychromonas_ingrahamii_37 2
Psychromonas_sp._CNPT3 2
Idiomarina_loihiensis_L2TR 0
Ferrimonas_balearica_DSM_9799 0
Shewanella_piezotolerans_WP3 0
Shewanella_loihica_PV-4 0
Shewanella_halifaxensis_HAW-EB4 1
Shewanella_sediminis_HAW-EB3 0
Shewanella_denitrificans_OS217 0
Shewanella_pealeana_ATCC_700345 0
Shewanella_oneidensis_MR-1 0
Shewanella_baltica_OS185 0
Shewanella_woodyi_ATCC_51908 1
Shewanella_sp._MR-4 0
Shewanella_amazonensis_SB2B 0
Shewanella_violacea_DSS12 1
Shewanella_frigidimarina_NCIMB_400 0
Shewanella_putrefaciens_CN-32 0
Colwellia_psychrerythraea_34H 1
Pseudoalteromonas_atlantica_T6c 2
Pseudoalteromonas_haloplanktis_TAC125 0
Glaciecola_sp._4H-3-7+YE-5 1
Glaciecola_nitratireducens_FR1064 1
Alteromonas_sp._SN2 0
Alteromonas_macleodii_str._'Deep_ecotype' 1
Kangiella_koreensis_DSM_16069 0
Hahella_chejuensis_KCTC_2396 1
Alcanivorax_borkumensis_SK2 1
Methylococcus_capsulatus_str._Bath 0
Dichelobacter_nodosus_VCS1703A 1
Rhodanobacter_denitrificans 1
Frateuria_aurantia_DSM_6220 0
Pseudoxanthomonas_suwonensis_11-1 0
Stenotrophomonas_maltophilia_K279a 0
Xylella_fastidiosa_M23 0
Xanthomonas_albilineans_GPE_PC73 0
Xanthomonas_oryzae_pv._oryzae_PXO99A 0
Nitrosococcus_oceani_ATCC_19707 1
Coxiella_burnetii_Dugway_5J108-111 1
gamma_proteobacterium_HdN1 1
Photorhabdus_asymbiotica 1
Photorhabdus_luminescens_subsp._laumondii_TTO1 2
Xenorhabdus_nematophila_ATCC_19061 1
Edwardsiella_tarda_EIB202 0
Rahnella_sp._Y9602 0
Yersinia_enterocolitica_subsp._enterocolitica_8081 1
Pantoea_vagans_C9-1 0
Pantoea_ananatis_LMG_20103 0
Erwinia_sp._Ejp617 1
Erwinia_pyrifoliae_Ep1/96 1
Salmonella_bongori_NCTC_12419 0
Citrobacter_rodentium_ICC168 0
Pseudomonas_syringae_pv._tomato_str._DC3000 0
Pseudomonas_fluorescens_SBW25 1
Pseudomonas_aeruginosa_UCBPP-PA14 0
Acinetobacter_baumannii_ATCC_17978 1
Methylophaga_sp._JAM1 1
Francisella_sp._TX077308 1
Methanosaeta_harundinacea_6Ac 0
Methanosarcina_acetivorans_C2A 0
Methanosarcina_barkeri_str._Fusaro 0
Methanospirillum_hungatei_JF-1 0
Methanoplanus_petrolearius_DSM_11571 1
Halopiger_xanaduensis_SH-6 0
Haloterrigena_turkmenica_DSM_5511 0
Halalkalicoccus_jeotgali_B3 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   43
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   13
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   8
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   5
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1
Coccidioides_posadasii_str._Silveira_ 0
Coccidioides_immitis_RMSCC_2394_ 0
Coccidioides_immitis_H538.4_ 0
Histoplasma_capsulatum_H143 0
Histoplasma_capsulatum_H88 0
Histoplasma_capsulatum_G186AR 0
Aspergillus_fumigatus_A1163_ 1
Candida_albicans_WO-1_ 0
Schizosaccharomyces_pombe_972h-_ 0
Batrachochytrium_dendrobatidis_JEL423_ 0
Batrachochytrium_dendrobatidis_JAM81_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   3
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5
Trypanosoma_brucei_Lister_427_v4.1 0
Neospora_caninum_Nc-Liverpool_6.2 0
Plasmodium_falciparum_HB3_ 0
Chroococcidiopsis_thermalis_PCC_7203 0
Chamaesiphon_minutus_PCC_6605 1
Cyanobium_gracile_PCC_6307 1
Synechococcus_sp._JA-2-3B'a(2-13) 0
Synechococcus_sp._JA-3-3Ab 0
Synechococcus_elongatus_PCC_6301 1
Crinalium_epipsammum_PCC_9333 4
Oscillatoria_nigro-viridis_PCC_7112 3
Oscillatoria_acuminata_PCC_6304 3
Arthrospira_platensis_NIES-39 3
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7425 0
Cyanothece_sp._PCC_7424 0
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 0
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 2
Stanieria_cyanosphaera_PCC_7437 3
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Candidatus_Phytoplasma_solani_tobfin_28409 0
Candidatus_Phytoplasma_australiense_Strawberry_lethal_yellows_phytoplasma_(CPA)_str._NZSb11 0
Candidatus_Phytoplasma_australiense 0
Ureaplasma_parvum_serovar_3_str._ATCC_700970 0
Mycoplasma_parvum_str._Indiana 0
Mycoplasma_ovis_str._Michigan 0
Mycoplasma_cynos_C142 0
Candidatus_Mycoplasma_haemolamae_str._Purdue 0
Mycoplasma_suis_str._Illinois 0
Mycoplasma_haemofelis_str._Langford_1 0
Mycoplasma_pneumoniae_M129-B7 0
Mycoplasma_pneumoniae_FH 0
Mycoplasma_pneumoniae_M129 1
Mycoplasma_hyorhinis_SK76 0
Mycoplasma_hyorhinis_MCLD 0
Mycoplasma_hyorhinis_HUB-1 0
Mycoplasma_hyorhinis_DBS_1050 0
Mycoplasma_genitalium_M2321 0
Mycoplasma_genitalium_M2288 0
Mycoplasma_genitalium_M6282 0
Mycoplasma_genitalium_M6320 0
Mycoplasma_gallisepticum_NC08_2008.031-4-3P 0
Mycoplasma_gallisepticum_CA06_2006.052-5-2P 0
Mycoplasma_gallisepticum_NC06_2006.080-5-2P 0
Mycoplasma_gallisepticum_WI01_2001.043-13-2P 0
Mycoplasma_gallisepticum_NY01_2001.047-5-1P 0
Mycoplasma_gallisepticum_NC96_1596-4-2P 0
Mycoplasma_gallisepticum_NC95_13295-2-2P 0
Mycoplasma_gallisepticum_VA94_7994-1-7P 0
Mycoplasma_gallisepticum_S6 0
Mycoplasma_gallisepticum_str._R(high) 0
Mycoplasma_gallisepticum_str._R(low) 0
Frankia_sp._EuI1c 0
Streptomyces_albus_J1074 1
Streptomyces_rapamycinicus_NRRL_5491 3
Streptomyces_davawensis_JCM_4913 3
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_venezuelae_ATCC_10712 2
Streptomyces_collinus_Tu_365 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 5
Saccharothrix_espanaensis_DSM_44229 1
Amycolatopsis_mediterranei_RB 2
Amycolatopsis_mediterranei_S699 2
Amycolatopsis_mediterranei_S699 2
Amycolatopsis_orientalis_HCCB10007 2
Actinoplanes_friuliensis_DSM_7358 0
Mycobacterium_abscessus_subsp._bolletii_50594 0
Corynebacterium_maris_DSM_45190 0
Corynebacterium_ulcerans_BR-AD22 3
Corynebacterium_ulcerans_809 4
Corynebacterium_urealyticum_DSM_7111 1
Corynebacterium_argentoratense_DSM_44202 1
Corynebacterium_callunae_DSM_20147 1
Corynebacterium_pseudotuberculosis_258 2
Corynebacterium_pseudotuberculosis_Cp162 1
Corynebacterium_pseudotuberculosis_P54B96 3
Corynebacterium_pseudotuberculosis_267 2
Corynebacterium_pseudotuberculosis_1/06-A 2
Corynebacterium_pseudotuberculosis_42/02-A 3
Corynebacterium_pseudotuberculosis_3/99-5 3
Corynebacterium_pseudotuberculosis_31 3
Corynebacterium_pseudotuberculosis_CIP_52.97 2
Corynebacterium_pseudotuberculosis_PAT10 3
Corynebacterium_pseudotuberculosis_I19 2
Corynebacterium_pseudotuberculosis_FRC41 3
Corynebacterium_pseudotuberculosis_C231 2
Corynebacterium_pseudotuberculosis_1002 2
Corynebacterium_glutamicum_SCgG2 2
Corynebacterium_glutamicum_SCgG1 2
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_glutamicum_ATCC_13032 1
Corynebacterium_diphtheriae_BH8 2
Corynebacterium_diphtheriae_INCA_402 2
Corynebacterium_diphtheriae_VA01 3
Corynebacterium_diphtheriae_HC04 3
Corynebacterium_diphtheriae_HC03 3
Corynebacterium_diphtheriae_HC02 3
Corynebacterium_diphtheriae_HC01 2
Corynebacterium_diphtheriae_241 2
Corynebacterium_diphtheriae_CDCE_8392 2
Corynebacterium_diphtheriae_PW8 3
Corynebacterium_diphtheriae_C7_(beta) 2
Corynebacterium_diphtheriae_31A 3
Deinococcus_peraridilitoris_DSM_19664 1
Clostridium_thermocellum_DSM_1313 0
Clostridium_sp._SY8519 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1
Clostridium_kluyveri_NBRC_12016 1
Clostridium_tetani_genome_12124569 1
Clostridium_botulinum_E3_str._Alaska_E43 1
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1
Halobacteroides_halobius_DSM_5150 1
Enterococcus_faecalis_OG1RF 0
Lactococcus_lactis_subsp._lactis_IO-1 1
Lactococcus_lactis_subsp._cremoris_KW2 1
Lactococcus_lactis_subsp._cremoris_UC509.9 1
Lactococcus_lactis_subsp._cremoris_A76 1
Lactococcus_lactis_subsp._cremoris_SK11 1
Streptococcus_pneumoniae_gamPNI0373 0
Streptococcus_pneumoniae_ATCC_700669 0
Streptococcus_pneumoniae_JJA 0
Streptococcus_agalactiae_2-22 0
Streptococcus_suis_TL13 1
Thermobacillus_composti_KWC4 0
Listeria_monocytogenes_serotype_4b_str._LL195 0
Listeria_monocytogenes_07PF0776 0
Listeria_monocytogenes_J1-220 0
Listeria_monocytogenes_J1816 0
Listeria_monocytogenes_ATCC_19117 0
Listeria_monocytogenes_L312 0
Listeria_monocytogenes_SLCC2378 0
Listeria_monocytogenes_serotype_4b_str._F2365 0
Amphibacillus_xylanus_NBRC_15112 1
Bacillus_infantis_NRRL_B-14911 1
Staphylococcus_aureus_subsp._aureus_MSHR1132 0
Staphylococcus_pseudintermedius_ED99 1
Staphylococcus_aureus_Bmb9393 0
Staphylococcus_aureus_M1 0
Staphylococcus_aureus_08BA02176 0
Staphylococcus_aureus_ST228/18412 1
Staphylococcus_aureus_ST228/18341 1
Staphylococcus_aureus_ST228/16125 1
Staphylococcus_aureus_ST228/16035 1
Staphylococcus_aureus_ST228/15532 1
Staphylococcus_aureus_ST228/10497 1
Staphylococcus_aureus_ST228/10388 1
Staphylococcus_aureus_04-02981 0
Staphylococcus_aureus_subsp._aureus_Z172 0
Staphylococcus_aureus_subsp._aureus_6850 0
Staphylococcus_aureus_subsp._aureus_SA957 0
Staphylococcus_aureus_subsp._aureus_CN1 0
Staphylococcus_aureus_subsp._aureus_SA40 0
Staphylococcus_aureus_subsp._aureus_11819-97 0
Staphylococcus_aureus_subsp._aureus_M013 0
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 1
Staphylococcus_aureus_subsp._aureus_VC40 0
Staphylococcus_aureus_subsp._aureus_T0131 0
Staphylococcus_aureus_subsp._aureus_LGA251 0
Staphylococcus_aureus_subsp._aureus_ECT-R_2 0
Staphylococcus_aureus_subsp._aureus_JKD6159 0
Staphylococcus_aureus_subsp._aureus_ED133 0
Staphylococcus_aureus_subsp._aureus_ED98 0
Staphylococcus_aureus_subsp._aureus_TW20 0
Staphylococcus_aureus_subsp._aureus_55/2053 0
Staphylococcus_aureus_subsp._aureus_TCH60 0
Staphylococcus_aureus_subsp._aureus_str._JKD6008 0
Staphylococcus_aureus_subsp._aureus_71193 0
Staphylococcus_aureus_subsp._aureus_S0385 0
Staphylococcus_aureus_subsp._aureus_str._Newman 0
Staphylococcus_aureus_subsp._aureus_Mu3 0
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 0
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 0
Staphylococcus_aureus_subsp._aureus_JH9 0
Staphylococcus_aureus_subsp._aureus_MRSA252 0
Staphylococcus_aureus_subsp._aureus_N315 1
Staphylococcus_aureus_subsp._aureus_Mu50 0
Staphylococcus_aureus_subsp._aureus_COL 0
Staphylococcus_aureus_subsp._aureus_NCTC_8325 0
Salinibacter_ruber_DSM_13855 0
Rhodothermus_marinus_SG0.5JP17-172 0
Echinicola_vietnamensis_DSM_17526 0
Prevotella_sp._oral_taxon_299_str._F0039 0
Porphyromonas_gingivalis_TDC60 0
Porphyromonas_gingivalis_W83 0
Alistipes_shahii_WAL_8301 0
Bacteroides_xylanisolvens_XB1A 0
Bacteroides_fragilis_638R 0
Bacteroides_fragilis_NCTC_9343 0
Nonlabens_dokdonensis_DSW-6 0
Psychroflexus_torquis_ATCC_700755 1
Riemerella_anatipestifer_RA-CH-2 0
Riemerella_anatipestifer_RA-CH-1 0
Riemerella_anatipestifer_RA-GD 0
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 0
Singulisphaera_acidiphila_DSM_18658 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 1
Leptospira_interrogans_serovar_Lai_str._56601 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1
Treponema_pedis_str._T_A4 2
Bdellovibrio_bacteriovorus_str._Tiberius 1
Campylobacter_jejuni_Waterborne_C.jejuni_Outbreak 0
Campylobacter_jejuni_subsp._jejuni_M1 0
Campylobacter_jejuni_subsp._jejuni_81116 0
Desulfobacula_toluolica_Tol2 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 0
Desulfovibrio_desulfuricans_ND132 0
Sorangium_cellulosum_So0157-2 8
Anaeromyxobacter_sp._K 0
Anaeromyxobacter_dehalogenans_2CP-C 0
Myxococcus_stipitatus_DSM_14675 5
Neisseria_meningitidis_M04-240196 0
Neisseria_meningitidis_M01-240149 0
Neisseria_meningitidis_NZ-05/33 0
Neisseria_meningitidis_M01-240355 0
Neisseria_meningitidis_H44/76 0
Neisseria_meningitidis_alpha710 0
Neisseria_meningitidis_MC58 0
Burkholderia_phenoliruptrix_BR3459a 0
Ralstonia_pickettii_12J 1
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_Po82 1
Ralstonia_solanacearum_PSI07 2
Ralstonia_solanacearum_CMR15 1
Ralstonia_solanacearum_GMI1000 1
Burkholderia_sp._CCGE1001 1
Burkholderia_sp._KJ006 0
Burkholderia_ambifaria_MC40-6 0
Burkholderia_multivorans_ATCC_17616 1
Variovorax_paradoxus_EPS 2
Caulobacter_crescentus_CB15 1
Zymomonas_mobilis_subsp._mobilis_CP4 0
Zymomonas_mobilis_subsp._mobilis_ATCC_10988 0
Zymomonas_mobilis_subsp._mobilis_ZM4 0
Rhodobacter_sphaeroides_ATCC_17025 0
Magnetospirillum_gryphiswaldense_MSR-1_v2 0
Rhodospirillum_rubrum_ATCC_11170 1
Methylobacterium_extorquens_DM4 0
Sinorhizobium_fredii_HH103 0
Sinorhizobium_meliloti_2011 1
Sinorhizobium_meliloti_1021 1
Rhizobium_etli_CFN_42 1
Rhizobium_etli_bv._mimosae_str._Mim1 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1
Rhodopseudomonas_palustris_BisB5 1
Rhodopseudomonas_palustris_BisB18 0
Bradyrhizobium_sp._S23321 0
Bradyrhizobium_sp._BTAi1 2
Bradyrhizobium_oligotrophicum_S58 2
Bradyrhizobium_japonicum_USDA_6 1
Vibrio_fischeri_ES114 2
Vibrio_sp._EJY3 2
Vibrio_parahaemolyticus_BB22OP 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 2
Vibrio_anguillarum_Listonella_anguillarum_M3 1
Vibrio_nigripulchritudo_VibrioScope 3
Vibrio_vulnificus_CMCP6 2
Vibrio_vulnificus_YJ016 2
Vibrio_cholerae_LMA3984-4 3
Vibrio_cholerae_M66-2 3
Vibrio_cholerae_O395 3
Vibrio_cholerae_IEC224 3
Vibrio_cholerae_O1_str._2010EL-1786 3
Vibrio_cholerae_MJ-1236 3
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 3
Idiomarina_loihiensis_GSL_199 0
Shewanella_sp._W3-18-1 0
Shewanella_sp._ANA-3 1
Shewanella_baltica_BA175 1
Shewanella_baltica_OS678 0
Shewanella_baltica_OS117 2
Shewanella_baltica_OS223 0
Shewanella_baltica_OS195 2
Shewanella_baltica_OS155 1
Shewanella_sp._MR-7 0
Shewanella_putrefaciens_200 1
Glaciecola_psychrophila_170 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 0
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U8' 0
Alteromonas_macleodii_str._'Ionian_Sea_U7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U4' 0
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 0
Alteromonas_macleodii_str._'English_Channel_615' 1
Alteromonas_macleodii_AltDE1 0
Alteromonas_macleodii_str._'English_Channel_673' 0
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 0
Alteromonas_macleodii_str._'Black_Sea_11' 0
Alteromonas_macleodii_ATCC_27126 0
Alcanivorax_dieselolei_B5 2
Stenotrophomonas_maltophilia_D457 0
Stenotrophomonas_maltophilia_JV3 0
Stenotrophomonas_maltophilia_R551-3 0
Xylella_fastidiosa_subsp._fastidiosa_GB514 0
Xylella_fastidiosa_M12 0
Xylella_fastidiosa_Temecula1 0
Xylella_fastidiosa_9a5c 0
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_pv._citrumelo_F1 0
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 0
Xanthomonas_oryzae_pv._oryzae_KACC_10331 0
Coxiella_burnetii_CbuK_Q154 1
Coxiella_burnetii_CbuG_Q212 1
Coxiella_burnetii_RSA_331 1
Coxiella_burnetii_RSA_493 1
Legionella_pneumophila_subsp._pneumophila 1
Edwardsiella_tarda_C07-087 0
Edwardsiella_tarda_FL6-60 0
Rahnella_aquatilis_HX2 0
Yersinia_enterocolitica_subsp._palearctica_Y11 1
Serratia_marcescens_FGI94 1
Pantoea_ananatis_LMG_5342 0
Pantoea_ananatis_PA13 0
Pantoea_ananatis_AJ13355 0
Erwinia_pyrifoliae_DSM_12163 1
Shigella_flexneri_2002017 0
Shigella_flexneri_2a_str._301 0
Salmonella_bongori_N268-08 0
Escherichia_coli_E24377A 0
Escherichia_coli_E._coli_PMV-1 0
Escherichia_coli_JJ1886 0
Escherichia_coli_O104:H4_str._2009EL-2050 0
Escherichia_coli_O104:H4_str._2009EL-2071 0
Escherichia_coli_O104:H4_str._2011C-3493 0
Escherichia_coli_NA114 0
Escherichia_coli_P12b 1
Escherichia_coli_APEC_O1 0
Escherichia_coli_ETEC_H10407 0
Pseudomonas_syringae_pv._syringae_B728a 0
Pseudomonas_monteilii_SB3101 0
Pseudomonas_monteilii_SB3078 0
Pseudomonas_putida_W619 1
Pseudomonas_poae_RE*1-1-14 1
Pseudomonas_fluorescens_F113 1
Pseudomonas_fluorescens_R124 1
Pseudomonas_fluorescens_Pf0-1 0
Pseudomonas_aeruginosa_SCV20265 0
Pseudomonas_aeruginosa_MTB-1 0
Pseudomonas_aeruginosa_LES431 0
Pseudomonas_aeruginosa_B136-33 0
Pseudomonas_aeruginosa_PA1R 0
Pseudomonas_aeruginosa_PA1 0
Pseudomonas_aeruginosa_DK2 0
Pseudomonas_aeruginosa_NCGM2.S1 0
Pseudomonas_aeruginosa_M18 0
Pseudomonas_aeruginosa_LESB58 0
Pseudomonas_aeruginosa_PA7 0
Pseudomonas_aeruginosa_PAO1 0
Acinetobacter_baumannii_ZW85-1 1
Acinetobacter_baumannii_D1279779 1
Acinetobacter_junii__SH205 1
Methylophaga_sp._JAM7 1
Natronococcus_occultus_SP4 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   7
Pan_troglodytes_69_2.1.4   (Chimpanzee)   6
Gorilla_gorilla_69_3.1   (Western gorilla)   9
Pongo_abelii_69_2   (Sumatran orangutan)   7
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   8
Macaca_mulatta_69_1   (Rhesus monkey)   11
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   9
Otolemur_garnettii_69_3   (Small-eared galago)   11
Microcebus_murinus_69_1   (Gray mouse lemur)   6
Rattus_norvegicus_69_3.4   (Norway rat)   13
Mus_musculus_69_38   (House mouse)   16
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   5
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   13
Cavia_porcellus_69_3   (Domestic guinea pig)   10
Oryctolagus_cuniculus_69_2   (Rabbit)   11
Ochotona_princeps_69   (American pika)   9
Tupaia_belangeri_69   (Northern tree shrew)   4
Sus_scrofa_69_10.2   (Pig)   3
Bos_taurus_69_3.1   (Cattle)   12
Vicugna_pacos_69_1   (Alpaca)   6
Tursiops_truncatus_69_1   (Bottlenose dolphin)   7
Mustela_putorius_furo_69_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_69_1   (Giant panda)   8
Canis_familiaris_69_3.1   (Dog)   4
Felis_catus_69   (Domestic cat)   7
Equus_caballus_69_2   (Horse)   12
Myotis_lucifugus_69_2.0   (Little brown bat)   6
Pteropus_vampyrus_69_1   (Large flying fox)   8
Sorex_araneus_69_1   (European shrew)   2
Erinaceus_europaeus_69   (Western European hedgehog)   6
Procavia_capensis_69_1   (Cape rock hyrax)   8
Loxodonta_africana_69_3   (African savanna elephant)   8
Echinops_telfairi_69   (Small Madagascar hedgehog)   6
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   7
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   4
Macropus_eugenii_69_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   10
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   12
Ornithorhynchus_anatinus_69_5   (Platypus)   8
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Meleagris_gallopavo_69_2   (Turkey)   3
Gallus_gallus_69_2   (Chicken)   3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   5
Anolis_carolinensis_69_2.0   (Green anole)   6
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   18
Latimeria_chalumnae_69_1   (Coelacanth)   6
Gadus_morhua_69_1   (Atlantic cod)   3
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   8
Takifugu_rubripes_69_4   (Torafugu)   8
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   7
Oryzias_latipes_69_1   (Japanese medaka)   10
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   10
Oreochromis_niloticus_69_1.0   (Nile tilapia)   16
Danio_rerio_69_9   (Zebrafish)   14
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3
Ciona_intestinalis_69   (Vase tunicate)   4
Drosophila_melanogaster_69_5   (Fruit fly)   13
Caenorhabditis_elegans_69_215   (Roundworm)   0
Arabidopsis_thaliana_10   (Thale cress)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   13
Homo_sapiens__(NCBI_version)   (Human)   9
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   14
Heliconius_numata__(Incomplete) 3
Loa_loa_v3.3_(Request)   (Eye worm)   2
Lotus_japonicus__(Early_assembly) 2
Malus_x_domestica_(Duplicate)   (Apple)   4
Ricinus_communis__(Early_assembly)   (Castor bean)   3
Nicotiana_benthamiana_0.4.4_(Early_draft) 3
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1
NCBI_plasmid_sequences_(Plasmids) 29
Protozoadb_2010_08_(Protozoadb) 1
Protein_Data_Bank_(all_PDB_sequenc) 11
TargetDB__(Targets) 20
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 5
NCBI_viral_sequences_(Viral) 8
STRING_v9.0.5_(STRING) 639
UniProt__viral_sequences_(Viral) 42
Uniprot_2018_03_genome 33765
NCBI_2017_08_genome 16870
PDB_chains_(SCOP_1.75)_(PDB) 4

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.