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Domain combinations for 50630,56672,53098,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50630 - Acid proteases
56672 - DNA/RNA polymerases
53098 - Ribonuclease H-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Ovis_aries_76_3.1   (Sheep)   2
Felis_catus_76_6.2   (Domestic cat)   0
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   0
Oikopleura_dioica 0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   5
Bombyx_mori_   (Domestic silkworm)   0
Nasonia_vitripennis_   (Jewel wasp)   3
Drosophila_pseudoobscura_2.13 0
Drosophila_mojavensis_1.3 0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Acyrthosiphon_pisum_   (Pea aphid)   1
Strigamia_maritima_22 1
Pristionchus_pacificus_ 0
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Meloidogyne_hapla_ 0
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 3
Caenorhabditis_remanei_ 1
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 2
Hymenolepis_microstoma_ 1
Mnemiopsis_leidyi   (Sea walnut)   0
Thelohanellus_kitauei 1
Acropora_digitifera_v1.0 1
Hydra_vulgaris 1
Amphimedon_queenslandica 0
Rhizopus_oryzae_RA_99-880_ 1
Pisolithus_microcarpus_441_v1.0 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   2
Yarrowia_lipolytica_CLIB122 0
Vanderwaltozyma_polyspora_DSM_70294_ 1
Candida_glabrata_CBS138 0
Saccharomyces_paradoxus_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_pombe   (Fission yeast)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   29
Glycine_max_v109   (Soybean)   0
Cucumis_sativus_v122   (Cucumber)   0
Prunus_persica_v139   (Peach)   0
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   5
Oryza_sativa_v193   (Rice)   5
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   1
Porphyridium_purpureum_02_2012 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 0
Phytophthora_infestans_T30-4_ 0
Perkinsus_marinus_ATCC_50983_ 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Cryptococcus_neoformans_B-3501A_ 0
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_PW5 0
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_W303 0
Saccharomyces_cerevisiae_JAY291 0
Saccharomyces_cerevisiae_T73 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Schizosaccharomyces_pombe_972h-_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   8
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0

Longest transcript per gene
Genome     Number
Danio_rerio_69_9   (Zebrafish)   0
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0

Others
Genome     Number
UniProt__viral_sequences_(Viral) 1
NCBI_viral_sequences_(Viral) 0
STRING_v9.0.5_(STRING) 24
NCBI_2017_08_genome 90
Uniprot_2018_03_genome 4000

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