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  Home > SCOP hierarchy > Domain combination - 50729,47473,_gap_,55550,50729,55550,_gap_,50044,51695,49562,_gap_

Domain combinations for 50729,47473,_gap_,55550,50729,55550,_gap_,50044,51695,49562,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50729 - PH domain-like
47473 - EF-hand
55550 - SH2 domain
50729 - PH domain-like
55550 - SH2 domain
50044 - SH3-domain
51695 - PLC-like phosphodiesterases
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Oryzias_latipes_76_1   (Japanese medaka)   1

Longest transcript per gene
Genome     Number
Oryzias_latipes_69_1   (Japanese medaka)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 1
Uniprot_2018_03_genome 56
NCBI_2017_08_genome 2

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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