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  Home > SCOP hierarchy > Domain combination - 50729,_gap_

Domain combinations for 50729,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50729 - PH domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   200
Pan_troglodytes_76_2.1.4   (Chimpanzee)   39
Gorilla_gorilla_76_3.1   (Western gorilla)   49
Pongo_abelii_76_2   (Sumatran orangutan)   37
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   44
Papio_anubis_76   (Olive baboon)   37
Macaca_mulatta_76_1   (Rhesus monkey)   78
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   114
Otolemur_garnettii_76_3   (Small-eared galago)   37
Microcebus_murinus_76_1   (Gray mouse lemur)   30
Rattus_norvegicus_76_5.0   (Norway rat)   45
Mus_musculus_76_38   (House mouse)   125
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   33
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   45
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   38
Cavia_porcellus_76_3   (Domestic guinea pig)   38
Oryctolagus_cuniculus_76_2   (Rabbit)   42
Ochotona_princeps_76   (American pika)   29
Tupaia_belangeri_76   (Northern tree shrew)   28
Sus_scrofa_76_10.2   (Pig)   53
Bos_taurus_76_3.1   (Cattle)   45
Ovis_aries_76_3.1   (Sheep)   38
Vicugna_pacos_76_1   (Alpaca)   19
Tursiops_truncatus_76_1   (Bottlenose dolphin)   32
Mustela_putorius_furo_76_1.0   (Domestic ferret)   37
Ailuropoda_melanoleuca_76_1   (Giant panda)   45
Canis_familiaris_76_3.1   (Dog)   49
Felis_catus_76_6.2   (Domestic cat)   42
Equus_caballus_76_2   (Horse)   36
Myotis_lucifugus_76_2.0   (Little brown bat)   38
Pteropus_vampyrus_76_1   (Large flying fox)   30
Sorex_araneus_76_1   (European shrew)   22
Erinaceus_europaeus_76   (Western European hedgehog)   23
Procavia_capensis_76_1   (Cape rock hyrax)   29
Loxodonta_africana_76_3   (African savanna elephant)   55
Echinops_telfairi_76   (Small Madagascar hedgehog)   31
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   57
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   28
Macropus_eugenii_76_1.0   (Tammar wallaby)   31
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   50
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   41
Ornithorhynchus_anatinus_76_5   (Platypus)   47
Saccoglossus_kowalevskii_v3.0 60
Petromyzon_marinus_76_7.0   (Sea lamprey)   27
Meleagris_gallopavo_76_2   (Turkey)   42
Gallus_gallus_76_4   (Chicken)   47
Anas_platyrhynchos_76_1.0   (Mallard)   40
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   43
Ficedula_albicollis_76_1.0   (Collared flycatcher)   34
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   48
Anolis_carolinensis_76_2.0   (Green anole)   41
Xenopus_laevis_   (African clawed frog)   86
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   54
Latimeria_chalumnae_76_1   (Coelacanth)   58
Lepisosteus_oculatus_76   (Spotted gar)   43
Gadus_morhua_76_1   (Atlantic cod)   61
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   52
Takifugu_rubripes_76_4   (Torafugu)   159
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   57
Oryzias_latipes_76_1   (Japanese medaka)   61
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   54
Poecilia_formosa_76   (Amazon molly)   49
Oreochromis_niloticus_76_1.0   (Nile tilapia)   61
Astyanax_mexicanus_76   (Mexican tetra)   57
Danio_rerio_76_9   (Zebrafish)   107
Oikopleura_dioica 13
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   25
Ciona_intestinalis_76   (Vase tunicate)   23
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   35
Adineta_vaga 43
Octopus_bimaculoides_280 46
Crassostrea_gigas_22   (Pacific oyster)   21
Lottia_gigantea_   (Owl limpet)   22
Helobdella_robusta_ 31
Capitella_sp._I_ 28
Danaus_plexippus_OGS1.0   (Monarch butterfly)   27
Heliconius_melpomene_   (Postman butterfly)   23
Bombyx_mori_   (Domestic silkworm)   26
Nasonia_vitripennis_   (Jewel wasp)   11
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   29
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   21
Linepithema_humile_v1.1   (Argentine ant)   18
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   22
Solenopsis_invicta_v.2.2.3   (Red fire ant)   19
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   20
Atta_cephalotes_v1.1 22
Camponotus_floridanus_v3.3   (Florida carpenter ant)   21
Lucilia_cuprina   (Australian sheep blowfly)   14
Drosophila_grimshawi_1.3 18
Drosophila_willistoni_1.3 19
Drosophila_pseudoobscura_2.13 19
Drosophila_persimilis_1.3 16
Drosophila_suzukii 13
Drosophila_yakuba_1.3 19
Drosophila_simulans_1.3 16
Drosophila_sechellia_1.3 19
Drosophila_melanogaster_76_5   (Fruit fly)   56
Drosophila_erecta_1.3 17
Drosophila_ananassae_1.3 19
Drosophila_virilis_1.2 19
Drosophila_mojavensis_1.3 17
Megaselia_scalaris_22 12
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   31
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   22
Anopheles_darlingi_22   (American malaria mosquito)   17
Anopheles_gambiae_49_3j   (African malaria mosquito)   23
Tribolium_castaneum_3.0   (Red flour beetle)   24
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   19
Acyrthosiphon_pisum_   (Pea aphid)   17
Rhodnius_prolixus_22 21
Daphnia_pulex_   (Common water flea)   23
Strigamia_maritima_22 20
Sarcoptes_scabiei 18
Tetranychus_urticae_   (Two-spotted spider mite)   18
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   22
Pristionchus_pacificus_ 17
Meloidogyne_incognita_   (Southern root-knot nematode)   16
Meloidogyne_hapla_ 10
Onchocerca_volvulus_22 11
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   21
Caenorhabditis_japonica_ 16
Caenorhabditis_brenneri_ 21
Caenorhabditis_remanei_ 17
Caenorhabditis_elegans_76_235   (Roundworm)   30
Caenorhabditis_briggsae_2 15
Trichinella_spiralis_22 17
Hymenolepis_microstoma_ 13
Echinococcus_multilocularis_ 15
Echinococcus_granulosus_ 16
Taenia_solium_   (Pork tapeworm)   20
Schistosoma_mansoni_ 15
Mnemiopsis_leidyi   (Sea walnut)   21
Thelohanellus_kitauei 2
Acropora_digitifera_v1.0 26
Nematostella_vectensis_1.0   (Starlet sea anemone)   28
Hydra_vulgaris 32
Amphimedon_queenslandica 50
Trichoplax_adhaerens_ 10
Proterospongia_sp._ATCC_50818_ 44
Monosiga_brevicollis_ 18
Sphaeroforma_arctica_JP610_ 6
Capsaspora_owczarzaki_ATCC_30864_ 13
Conidiobolus_coronatus_NRRL28638_v1.0 4
Mortierella_verticillata_NRRL_6337_ 7
Phycomyces_blakesleeanus_ 11
Rhizopus_oryzae_RA_99-880_ 15
Mucor_circinelloides_ 6
Rhizomucor_miehei_CAU432_ 11
Malassezia_globosa_CBS_7966_ 6
Sporisorium_reilianum_22 2
Ustilago_maydis_ 3
Mixia_osmundae_IAM_14324_v1.0 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 3
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 6
Melampsora_laricis-populina_ 4
Rhodotorula_graminis_WP1_v1.0 4
Sporobolomyces_roseus_IAM_13481_ 3
Microbotryum_violaceum_22 4
Wallemia_sebi_v1.0 4
Sphaerobolus_stellatus_v1.0 8
Piloderma_croceum_F_1598_v1.0 7
Serpula_lacrymans_var._lacrymans_S7.9_ 3
Coniophora_puteana 5
Hydnomerulius_pinastri_v2.0 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 2
Pisolithus_microcarpus_441_v1.0 4
Pisolithus_tinctorius_Marx_270_v1.0 5
Scleroderma_citrinum_Foug_A_v1.0 3
Coprinopsis_cinerea_okayama7_130_v3 5
Pleurotus_ostreatus_   (Oyster mushroom)   6
Amanita_thiersii_Skay4041_v1.0 5
Amanita_muscaria_Koide_v1.0   (Fly agaric)   6
Galerina_marginata_v1.0 5
Hebeloma_cylindrosporum_h7_v2.0 5
Laccaria_bicolor_S238N-H82_ 4
Agaricus_bisporus_var._bisporus_ 5
Schizophyllum_commune_ 4
Stereum_hirsutum_FP-91666_SS1__v1.0 4
Heterobasidion_annosum_ 6
Gloeophyllum_trabeumv1.0 6
Punctularia_strigosozonata_v1.0 6
Sebacina_vermifera_MAFF_305830_v1.0 10
Fomitiporia_mediterranea_v1.0 3
Tulasnella_calospora_AL13/4D_v1.0 6
Postia_placenta_ 8
Wolfiporia_cocos_MD-104_SS10__v1.0 5
Fomitopsis_pinicolav1.0 4
Fomitopsis_pinicola_FP-58527_SS1_v3.0 5
Phanerochaete_chrysosporium_RP-78_2.1 6
Dichomitus_squalens 6
Trametes_versicolor_v1.0 5
Tremella_mesenterica_   (Witches' butter)   2
Daldinia_eschscholzii_EC12_v1.0 4
Apiospora_montagnei_NRRL_25634_v1.0 5
Magnaporthe_poae_ATCC_64411_22 2
Magnaporthe_grisea_70-15_ 4
Podospora_anserina_ 3
Sporotrichum_thermophile_ATCC_42464_ 2
Thielavia_terrestris_NRRL_8126_ 2
Chaetomium_globosum_CBS_148.51_ 3
Neurospora_tetrasperma_ 4
Neurospora_discreta_FGSC_8579_ 4
Neurospora_crassa_OR74A_ 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   4
Verticillium_albo-atrum_VaMs.102_ 3
Verticillium_dahliae_VdLs.17_ 4
Acremonium_alcalophilumv_1.0 3
Glomerella_graminicola_22 3
Fusarium_graminearum_ 7
Nectria_haematococca_mpVI_ 4
Fusarium_oxysporum_f._sp._lycopersici_4286_ 6
Fusarium_verticillioides_7600_ 5
Trichoderma_asperellum_CBS_433.97_v1.0 5
Trichoderma_atroviride_ 4
Trichoderma_citrinoviride_v1.0 7
Trichoderma_reesei_1.2 6
Trichoderma_virens_Gv29-8_ 4
Trichoderma_longibrachiatum_ATCC_18648_v1.0 3
Trichoderma_harzianum_CBS_226.95_v1.0 5
Amorphotheca_resinae_v1.0   (Creosote fungus)   6
Botrytis_cinerea_B05.10_ 7
Sclerotinia_sclerotiorum_ 5
Blumeria_graminis_22 4
Didymella_exigua_CBS_183.55_v1.0 5
Leptosphaeria_maculans_22 3
Setosphaeria_turcica_v1.0 5
Cochliobolus_miyabeanus_ATCC_44560_v1.0 5
Cochliobolus_victoriae_FI3_v1.0 5
Cochliobolus_carbonum_26-R-13_v1.0 5
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   4
Alternaria_brassicicola_ 5
Cochliobolus_lunatus_m118_v2.0 5
Pyrenophora_teres_f._teres_22 6
Pyrenophora_tritici-repentis_ 6
Stagonospora_nodorum_ 5
Mycosphaerella_graminicola_IPO323_ 5
Zasmidium_cellare_ATCC_36951_v1.0 4
Dothistroma_septosporum 5
Septoria_musiva_v1.0 4
Mycosphaerella_fijiensis_CIRAD86_ 4
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 6
Paracoccidioides_brasiliensis_Pb18_ 3
Coccidioides_posadasii_RMSCC_3488_ 4
Coccidioides_immitis_RS_ 5
Ajellomyces_dermatitidis_SLH14081_ 4
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3
Microsporum_canis_CBS_113480_ 3
Trichophyton_equinum_CBS_127.97_ 4
Trichophyton_verrucosum_HKI_0517_ 3
Arthroderma_benhamiae_CBS_112371_ 3
Trichophyton_tonsurans_CBS_112818_ 4
Trichophyton_rubrum_CBS_118892_ 4
Uncinocarpus_reesii_1704_ 4
Aspergillus_zonatus_v1.0 3
Penicillium_chrysogenum_Wisconsin_54-1255_ 4
Penicillium_chrysogenum_v1.0 4
Aspergillus_acidus_v1.0 3
Aspergillus_fumigatus_Af293 2
Aspergillus_brasiliensis_v1.0 3
Aspergillus_nidulans_FGSC_A4_ 3
Aspergillus_sydowii_v1.0 4
Aspergillus_versicolor_v1.0 3
Aspergillus_glaucus 3
Aspergillus_carbonarius_ITEM_5010_ 3
Neosartorya_fischeri_NRRL_181_ 3
Aspergillus_terreus_NIH2624_ 3
Aspergillus_tubingensis_v1.0 3
Aspergillus_wentii_v1.0 3
Aspergillus_oryzae_RIB40_ 3
Aspergillus_niger_22 3
Aspergillus_niger_ATCC_1015_ 1
Aspergillus_flavus_NRRL3357_ 3
Aspergillus_clavatus_NRRL_1_ 2
Penicillium_marneffei_ATCC_18224_ 3
Tuber_melanosporum_Mel28_22 4
Tuber_melanosporum_Vittad_   (Perigord truffle)   4
Hansenula_polymorpha_v2.0 0
Dekkera_bruxellensis_CBS_2499_v2.0 1
Pichia_membranifaciensv1.0 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 2
Candida_dubliniensis_CD36_ 2
Candida_tropicalis_MYA-3404_ 1
Candida_parapsilosis_ 1
Candida_albicans_SC5314 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 2
Pichia_stipitis_CBS_6054_ 1
Candida_guilliermondii_ATCC_6260_ 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1
Debaromyces_hansenii 1
Wickerhamomyces_anomalus 2
Pichia_pastoris_GS115_ 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 3
Candida_lusitaniae_ATCC_42720_ 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Vanderwaltozyma_polyspora_DSM_70294_ 1
Candida_glabrata_CBS138 2
Kluyveromyces_thermotolerans_CBS_6340 1
Lachancea_kluyveri_ 1
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 2
Zygosaccharomyces_rouxii_ 1
Saccharomyces_mikatae_MIT 3
Saccharomyces_paradoxus_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Saccharomyces_bayanus_MIT 3
Kluyveromyces_lactis 1
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_octosporus_yFS286_ 1
Schizosaccharomyces_japonicus_yFS275_ 1
Schizosaccharomyces_pombe   (Fission yeast)   1
Catenaria_anguillulae_PL171_v1.0 5
Allomyces_macrogynus_ATCC_38327_ 12
Spizellomyces_punctatus_DAOM_BR117_ 4
Dictyostelium_discoideum 13
Dictyostelium_purpureum_ 12
Entamoeba_dispar_1.2 18
Entamoeba_invadens_1.2 19
Entamoeba_histolytica_1 18
Selaginella_moellendorffii_ 17
Pinus_taeda   (Loblolly pine)   2
Picea_abies   (Norway spruce)   5
Eucalyptus_grandis_v201   (Rose gum)   16
Theobroma_cacao_B97-61/B2_v1   (Cacao)   8
Gossypium_raimondii_v221 29
Citrus_clementina_v165 13
Citrus_sinensis_v154   (Sweet orange)   14
Thellungiella_halophila_v173 7
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   11
Capsella_rubella_v183 7
Arabidopsis_lyrata_   (Lyrate rockcress)   7
Arabidopsis_thaliana_10   (Thale cress)   9
Carica_papaya_   (Papaya)   8
Medicago_truncatula_   (Barrel medic)   12
Phaseolus_vulgaris_v186   (French bean)   9
Glycine_max_v109   (Soybean)   19
Cucumis_sativus_v122   (Cucumber)   9
Fragaria_vesca_   (Wild strawberry)   9
Malus_domestica_v196   (Apple)   17
Prunus_persica_v139   (Peach)   9
Linum_usitatissimum_v200   (Flax)   15
Manihot_esculenta_v147   (Cassava)   17
Populus_trichocarpa_v156   (Black cottonwood)   20
Vitis_vinifera_   (Wine grape)   9
Mimulus_guttatus_v140   (Spotted monkey flower)   10
Solanum_lycopersicum_v.2.3   (Tomato)   17
Solanum_tuberosum_   (Potato)   19
Actinidia_chinensis_Hongyang_ 16
Aquilegia_coerulea_v195 14
Triticum_urartu_22 9
Triticum_aestivum_22   (Bread wheat)   34
Aegilops_tauschii_22 5
Brachypodium_distachyon_   (Stiff brome)   13
Oryza_barthii_22   (African wild rice)   17
Oryza_meridionalis_22 19
Oryza_glumaepatula_22 24
Oryza_glaberrima   (African rice)   11
Oryza_punctata_22 25
Oryza_nivara_22 26
Oryza_brachyantha_22   (Malo sina)   12
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   18
Oryza_sativa_v193   (Rice)   18
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   16
Panicum_virgatum_v202   (Switchgrass)   23
Setaria_italica_v164   (Foxtail millet)   11
Zea_mays_subsp._mays_   (Maize)   26
Zea_mays_v181   (Maize)   29
Sorghum_bicolor_   (Sorghum)   8
Musa_balbisiana   (Balbis banana)   8
Musa_acuminata_22   (Wild Malaysian banana)   16
Amborella_trichopoda_22 7
Physcomitrella_patens 13
Coccomyxa_subellipsoidea_sp._C-169_v2 4
Asterochloris_sp._Cgr/DA1pho_v1.0 3
Chlorella_variabilis_sp._NC64A_ 5
Chlorella_vulgaris_ 5
Volvox_carteri_f._nagariensis_ 5
Volvox_carteri_v199 6
Chlamydomonas_reinhardtii_4.0 4
Ostreococcus_sp._RCC809_ 0
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 1
Micromonas_sp._RCC299_ 3
Micromonas_pusilla_CCMP1545_v3.0 3
Cyanidioschyzon_merolae_strain_10D_22 2
Cyanidioschyzon_merolae 2
Porphyridium_purpureum_02_2012 3
Thecamonas_trahens_ATCC_50062_ 12
Bigelowiella_natans_CCMP2755_22 29
Giardia_lamblia_2.3 1
Cyanophora_paradoxa_ 7
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_vivax_ 0
Trypanosoma_cruzi_strain_CL_Brener 2
Trypanosoma_congolense_2.4 1
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Ectocarpus_siliculosus 14
Aureococcus_anophagefferens_ 5
Albugo_laibachii_22 19
Pythium_iwayamai_DAOM_BR242034_22 25
Pythium_arrhenomanes_ATCC_12531_22 22
Pythium_ultimum_v1.7-2 31
Pythium_aphanidermatum_DAOM_BR444_22 15
Pythium_irregulare_DAOM_BR486_22 29
Pythium_vexans_DAOM_BR484_22 21
Phytophthora_ramorum_1.1   (Sudden oak death agent)   20
Phytophthora_sojae_1.1 19
Phytophthora_infestans_T30-4_ 27
Phytophthora_capsici_ 21
Hyaloperonospora_arabidopsidis_22 16
Phaeodactylum_tricornutumCCAP_1055/1 4
Fragilariopsis_cylindrus 3
Thalassiosira_pseudonana_CCMP1335 6
Perkinsus_marinus_ATCC_50983_ 3
Paramecium_tetraurelia_ 15
Tetrahymena_thermophila_SB210_1_ 4
Ichthyophthirius_multifiliis_strain_G5_ 2
Cryptosporidium_hominis 1
Cryptosporidium_muris 4
Cryptosporidium_parvum_Iowa_II 3
Neospora_caninum 5
Toxoplasma_gondii_VEG 4
Toxoplasma_gondii_ME49 5
Toxoplasma_gondii_GT1 4
Babesia_bovis_T2Bo_ 10
Theileria_parva__ 3
Theileria_annulata 3
Plasmodium_falciparum_3D7_ 3
Plasmodium_vivax_SaI-1_7.0 3
Plasmodium_knowlesi_strain_H_ 3
Plasmodium_yoelii_ssp._yoelii_1_ 3
Plasmodium_chabaudi_ 4
Plasmodium_berghei_ANKA_ 3
Symbiodinium_minutum_clade_B1_v1.2 10
Naegleria_gruberi_ 7
Trichomonas_vaginalis_ 11
Guillardia_theta_CCMP2712_v1.0_ 16
Emiliania_huxleyi_CCMP1516_ 26
Methanohalobium_evestigatum_Z-7303 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   86
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   39
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   24
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   15
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   23
Cryptococcus_neoformans_var._grubii_H99_ 4
Cryptococcus_neoformans_B-3501A_ 5
Cryptococcus_neoformans_JEC21_ 5
Paracoccidioides_brasiliensis_Pb01_ 3
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_posadasii_str._Silveira_ 5
Coccidioides_immitis_RMSCC_3703_ 6
Coccidioides_immitis_RMSCC_2394_ 5
Coccidioides_immitis_H538.4_ 5
Ajellomyces_dermatitidis_ER-3_ 4
Histoplasma_capsulatum_H143 4
Histoplasma_capsulatum_H88 3
Histoplasma_capsulatum_G186AR 3
Aspergillus_fumigatus_A1163_ 2
Candida_albicans_WO-1_ 2
Saccharomyces_cerevisiae_UC5 1
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_FL100 0
Saccharomyces_cerevisiae_CLIB382 0
Saccharomyces_cerevisiae_CLIB324 0
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 1
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_FostersB 2
Saccharomyces_cerevisiae_FostersO 1
Saccharomyces_cerevisiae_VL3 0
Saccharomyces_cerevisiae_Vin13 0
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_AWRI796 3
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_AWRI1631 0
Saccharomyces_cerevisiae_YPS163 0
Saccharomyces_cerevisiae_M22 0
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_Y10 1
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 1
Saccharomyces_cerevisiae_RM11-1a 1
Saccharomyces_cerevisiae_RM11-1a_ 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Schizosaccharomyces_pombe_972h-_ 1
Batrachochytrium_dendrobatidis_JEL423_ 4
Batrachochytrium_dendrobatidis_JAM81_ 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   8
Hordeum_vulgare_22   (Domesticated barley)   22
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   15
Trypanosoma_brucei_Lister_427_v4.1 0
Neospora_caninum_Nc-Liverpool_6.2 5
Plasmodium_falciparum_HB3_ 3
Plasmodium_falciparum_Dd2_ 2
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1
Natronobacterium_gregoryi_SP2 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   35
Pan_troglodytes_69_2.1.4   (Chimpanzee)   38
Gorilla_gorilla_69_3.1   (Western gorilla)   37
Pongo_abelii_69_2   (Sumatran orangutan)   35
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   34
Macaca_mulatta_69_1   (Rhesus monkey)   41
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   50
Otolemur_garnettii_69_3   (Small-eared galago)   36
Microcebus_murinus_69_1   (Gray mouse lemur)   30
Rattus_norvegicus_69_3.4   (Norway rat)   45
Mus_musculus_69_38   (House mouse)   38
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   33
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   41
Cavia_porcellus_69_3   (Domestic guinea pig)   37
Oryctolagus_cuniculus_69_2   (Rabbit)   44
Ochotona_princeps_69   (American pika)   29
Tupaia_belangeri_69   (Northern tree shrew)   28
Sus_scrofa_69_10.2   (Pig)   49
Bos_taurus_69_3.1   (Cattle)   39
Vicugna_pacos_69_1   (Alpaca)   19
Tursiops_truncatus_69_1   (Bottlenose dolphin)   32
Mustela_putorius_furo_69_1.0   (Domestic ferret)   37
Ailuropoda_melanoleuca_69_1   (Giant panda)   40
Canis_familiaris_69_3.1   (Dog)   34
Felis_catus_69   (Domestic cat)   29
Equus_caballus_69_2   (Horse)   33
Myotis_lucifugus_69_2.0   (Little brown bat)   36
Pteropus_vampyrus_69_1   (Large flying fox)   30
Sorex_araneus_69_1   (European shrew)   22
Erinaceus_europaeus_69   (Western European hedgehog)   23
Procavia_capensis_69_1   (Cape rock hyrax)   29
Loxodonta_africana_69_3   (African savanna elephant)   39
Echinops_telfairi_69   (Small Madagascar hedgehog)   31
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   28
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   28
Macropus_eugenii_69_1.0   (Tammar wallaby)   31
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   41
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   39
Ornithorhynchus_anatinus_69_5   (Platypus)   44
Petromyzon_marinus_69_7.0   (Sea lamprey)   24
Meleagris_gallopavo_69_2   (Turkey)   39
Gallus_gallus_69_2   (Chicken)   39
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   43
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   36
Anolis_carolinensis_69_2.0   (Green anole)   43
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   42
Latimeria_chalumnae_69_1   (Coelacanth)   42
Gadus_morhua_69_1   (Atlantic cod)   48
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   44
Takifugu_rubripes_69_4   (Torafugu)   50
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   48
Oryzias_latipes_69_1   (Japanese medaka)   42
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   53
Oreochromis_niloticus_69_1.0   (Nile tilapia)   47
Danio_rerio_69_9   (Zebrafish)   53
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   19
Ciona_intestinalis_69   (Vase tunicate)   22
Drosophila_melanogaster_69_5   (Fruit fly)   15
Caenorhabditis_elegans_69_215   (Roundworm)   19
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1
Arabidopsis_thaliana_10   (Thale cress)   8

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   234
Homo_sapiens__(NCBI_version)   (Human)   69
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   36
Heliconius_numata__(Incomplete) 8
Loa_loa_v3.3_(Request)   (Eye worm)   16
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   21
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   14
Moniliophthora_perniciosa_FA553__(Genome_survey) 5
Encephalitozoon_intestinalis__(endoparasite) 0
Encephalitozoon_cuniculi_(endoparasite) 0
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2
Lotus_japonicus__(Early_assembly) 9
Malus_x_domestica_(Duplicate)   (Apple)   17
Ricinus_communis__(Early_assembly)   (Castor bean)   8
Nicotiana_benthamiana_0.4.4_(Early_draft) 21
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   17
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   17
Phoenix_dactylifera__(Early_draft)   (Date palm)   6
Protozoadb_2010_08_(Protozoadb) 169
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 35
Protein_Data_Bank_(all_PDB_sequenc) 4
TargetDB__(Targets) 69
STRING_v9.0.5_(STRING) 1889
PDB_chains_(SCOP_1.75)_(PDB) 5
Uniprot_2018_03_genome 65238
NCBI_2017_08_genome 29279

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.