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  Home > SCOP hierarchy > Domain combination - 50729,_gap_,50729,_gap_,50156,_gap_,48065,50729,_gap_

Domain combinations for 50729,_gap_,50729,_gap_,50156,_gap_,48065,50729,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50729 - PH domain-like
50729 - PH domain-like
50156 - PDZ domain-like
48065 - DBL homology domain (DH-domain)
50729 - PH domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Nasonia_vitripennis_   (Jewel wasp)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Drosophila_willistoni_1.3 1
Drosophila_simulans_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   5
Drosophila_mojavensis_1.3 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Capsaspora_owczarzaki_ATCC_30864_ 1

Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0

Others
Genome     Number
NCBI_2017_08_genome 219
STRING_v9.0.5_(STRING) 3
Uniprot_2018_03_genome 1900

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.