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  Home > SCOP hierarchy > Domain combination - 50965,117281

Domain combinations for 50965,117281 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50965 - Galactose oxidase, central domain
117281 - Kelch motif

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Pongo_abelii_76_2   (Sumatran orangutan)   0
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Rattus_norvegicus_76_5.0   (Norway rat)   0
Mus_musculus_76_38   (House mouse)   0
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   1
Bos_taurus_76_3.1   (Cattle)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   1
Pteropus_vampyrus_76_1   (Large flying fox)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   1
Loxodonta_africana_76_3   (African savanna elephant)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Saccoglossus_kowalevskii_v3.0 0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Latimeria_chalumnae_76_1   (Coelacanth)   1
Takifugu_rubripes_76_4   (Torafugu)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Poecilia_formosa_76   (Amazon molly)   0
Oikopleura_dioica 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_76   (Vase tunicate)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Adineta_vaga 5
Crassostrea_gigas_22   (Pacific oyster)   1
Lottia_gigantea_   (Owl limpet)   0
Capitella_sp._I_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Drosophila_mojavensis_1.3 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Acyrthosiphon_pisum_   (Pea aphid)   2
Rhodnius_prolixus_22 0
Daphnia_pulex_   (Common water flea)   0
Strigamia_maritima_22 1
Tetranychus_urticae_   (Two-spotted spider mite)   0
Pristionchus_pacificus_ 1
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 2
Schistosoma_mansoni_ 0
Mnemiopsis_leidyi   (Sea walnut)   0
Acropora_digitifera_v1.0 0
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Hydra_vulgaris 0
Amphimedon_queenslandica 4
Trichoplax_adhaerens_ 0
Proterospongia_sp._ATCC_50818_ 0
Monosiga_brevicollis_ 0
Capsaspora_owczarzaki_ATCC_30864_ 0
Mortierella_verticillata_NRRL_6337_ 0
Phycomyces_blakesleeanus_ 2
Mucor_circinelloides_ 0
Malassezia_globosa_CBS_7966_ 0
Pleurotus_ostreatus_   (Oyster mushroom)   0
Galerina_marginata_v1.0 1
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Trametes_versicolor_v1.0 0
Sporotrichum_thermophile_ATCC_42464_ 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1
Zasmidium_cellare_ATCC_36951_v1.0 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Saccharomyces_mikatae_MIT 1
Allomyces_macrogynus_ATCC_38327_ 0
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 1
Pinus_taeda   (Loblolly pine)   0
Gossypium_raimondii_v221 0
Citrus_clementina_v165 0
Thellungiella_halophila_v173 0
Arabidopsis_thaliana_10   (Thale cress)   0
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   0
Malus_domestica_v196   (Apple)   1
Linum_usitatissimum_v200   (Flax)   0
Vitis_vinifera_   (Wine grape)   0
Triticum_aestivum_22   (Bread wheat)   0
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_glumaepatula_22 0
Oryza_punctata_22 0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Chlorella_variabilis_sp._NC64A_ 0
Chlorella_vulgaris_ 0
Chlamydomonas_reinhardtii_4.0 1
Ostreococcus_sp._RCC809_ 0
Bathycoccus_prasinos_ 0
Micromonas_pusilla_CCMP1545_v3.0 0
Cyanophora_paradoxa_ 0
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Trypanosoma_cruzi_strain_CL_Brener 1
Ectocarpus_siliculosus 0
Aureococcus_anophagefferens_ 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 1
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_irregulare_DAOM_BR486_22 0
Phytophthora_infestans_T30-4_ 1
Phytophthora_capsici_ 1
Phaeodactylum_tricornutumCCAP_1055/1 0
Thalassiosira_pseudonana_CCMP1335 0
Perkinsus_marinus_ATCC_50983_ 0
Paramecium_tetraurelia_ 1
Ichthyophthirius_multifiliis_strain_G5_ 0
Toxoplasma_gondii_GT1 0
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 0
Guillardia_theta_CCMP2712_v1.0_ 0
Emiliania_huxleyi_CCMP1516_ 1
Thermobaculum_terrenum_ATCC_BAA-798 0
Mycobacterium_sp._JLS 0
Mycobacterium_intracellulare_ATCC_13950 0
Mycobacterium_vanbaalenii_PYR-1 0
Mycobacterium_rhodesiae_NBB3 0
Herpetosiphon_aurantiacus_DSM_785 0
Truepera_radiovictrix_DSM_17093 1
Niastella_koreensis_GR20-10 0
Paludibacter_propionicigenes_WB4 0
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 0
Haliangium_ochraceum_DSM_14365 0
Sorangium_cellulosum_'So_ce_56' 0
Stigmatella_aurantiaca_DW4/3-1 0
Corallococcus_coralloides_DSM_2259 1
Pseudoalteromonas_atlantica_T6c 1
Methylomicrobium_alcaliphilum 0
Candidatus_Caldiarchaeum_subterraneum 1

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Paracoccidioides_brasiliensis_Pb03_ 0
Mycobacterium_sp._MOTT36Y 0
Mycobacterium_sp._KMS 0
Mycobacterium_sp._MCS 0
Mycobacterium_yongonense_05-1390 0
Mycobacterium_intracellulare_MOTT-64 0
Mycobacterium_indicus_pranii_MTCC_9506 0
Mycobacterium_intracellulare_MOTT-02 0
Sorangium_cellulosum_So0157-2 1
Myxococcus_stipitatus_DSM_14675 0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Pongo_abelii_69_2   (Sumatran orangutan)   0
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Rattus_norvegicus_69_3.4   (Norway rat)   0
Mus_musculus_69_38   (House mouse)   0
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   1
Bos_taurus_69_3.1   (Cattle)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   1
Pteropus_vampyrus_69_1   (Large flying fox)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   1
Loxodonta_africana_69_3   (African savanna elephant)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Ciona_intestinalis_69   (Vase tunicate)   1
Drosophila_melanogaster_69_5   (Fruit fly)   0
Arabidopsis_thaliana_10   (Thale cress)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Malus_x_domestica_(Duplicate)   (Apple)   1
Protozoadb_2010_08_(Protozoadb) 3
STRING_v9.0.5_(STRING) 9
NCBI_2017_08_genome 178
Uniprot_2018_03_genome 699
TargetDB__(Targets) 0
Protein_Data_Bank_(all_PDB_sequenc) 0

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.