SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 51419,50621,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

51419 - PLP-binding barrel
50621 - Alanine racemase C-terminal domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Papio_anubis_76   (Olive baboon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   2
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_76_3   (Small-eared galago)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Mus_musculus_76_38   (House mouse)   0
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Ochotona_princeps_76   (American pika)   0
Sus_scrofa_76_10.2   (Pig)   1
Bos_taurus_76_3.1   (Cattle)   0
Ovis_aries_76_3.1   (Sheep)   0
Vicugna_pacos_76_1   (Alpaca)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   0
Felis_catus_76_6.2   (Domestic cat)   0
Equus_caballus_76_2   (Horse)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   1
Pteropus_vampyrus_76_1   (Large flying fox)   0
Procavia_capensis_76_1   (Cape rock hyrax)   1
Loxodonta_africana_76_3   (African savanna elephant)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   0
Saccoglossus_kowalevskii_v3.0 1
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Meleagris_gallopavo_76_2   (Turkey)   0
Gallus_gallus_76_4   (Chicken)   0
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Anolis_carolinensis_76_2.0   (Green anole)   0
Xenopus_laevis_   (African clawed frog)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_76_1   (Coelacanth)   0
Lepisosteus_oculatus_76   (Spotted gar)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Takifugu_rubripes_76_4   (Torafugu)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Poecilia_formosa_76   (Amazon molly)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Danio_rerio_76_9   (Zebrafish)   0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Crassostrea_gigas_22   (Pacific oyster)   0
Helobdella_robusta_ 0
Capitella_sp._I_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2
Heliconius_melpomene_   (Postman butterfly)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Anopheles_darlingi_22   (American malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   2
Daphnia_pulex_   (Common water flea)   0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Pristionchus_pacificus_ 0
Onchocerca_volvulus_22 0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Mnemiopsis_leidyi   (Sea walnut)   0
Acropora_digitifera_v1.0 0
Monosiga_brevicollis_ 0
Capsaspora_owczarzaki_ATCC_30864_ 0
Malassezia_globosa_CBS_7966_ 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Wallemia_sebi_v1.0 0
Zasmidium_cellare_ATCC_36951_v1.0 0
Coccidioides_posadasii_RMSCC_3488_ 0
Coccidioides_immitis_RS_ 0
Uncinocarpus_reesii_1704_ 0
Gossypium_raimondii_v221 0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   0
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   0
Aegilops_tauschii_22 0
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 0
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Panicum_virgatum_v202   (Switchgrass)   0
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Chlorella_variabilis_sp._NC64A_ 0
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Micromonas_pusilla_CCMP1545_v3.0 0
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Bigelowiella_natans_CCMP2755_22 1
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Aureococcus_anophagefferens_ 0
Pythium_ultimum_v1.7-2 0
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_capsici_ 0
Fragilariopsis_cylindrus 2
Tetrahymena_thermophila_SB210_1_ 0
Neospora_caninum 0
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Symbiodinium_minutum_clade_B1_v1.2 0
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 0
Frankia_symbiont_of_Datisca_glomerata 1
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_sp._SirexAA-E 0
Streptomyces_griseus_subsp._griseus_NBRC_13350 0
Streptomyces_bingchenggensis_BCW-1 0
Streptomyces_violaceusniger_Tu_4113 0
Streptomyces_avermitilis_MA-4680 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 0
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 0
Corynebacterium_resistens_DSM_45100 0
Herpetosiphon_aurantiacus_DSM_785 0
Roseiflexus_sp._RS-1 0
Roseiflexus_castenholzii_DSM_13941 0
Chloroflexus_sp._MS-G 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aggregans_DSM_9485 0
Chloroflexus_aurantiacus_J-10-fl 0
Thermaerobacter_marianensis_DSM_12885 1
Eubacterium_eligens_ATCC_27750 1
Eubacterium_rectale_ATCC_33656 1
Candidatus_Cloacamonas_acidaminovorans 1
Fibrella_aestuarina 0
Leadbetterella_byssophila_DSM_17132 0
Dyadobacter_fermentans_DSM_18053 0
Spirosoma_linguale_DSM_74 0
Runella_slithyformis_DSM_19594 0
Robiginitalea_biformata_HTCC2501 0
Croceibacter_atlanticus_HTCC2559 0
Zobellia_galactanivorans 0
Muricauda_ruestringensis_DSM_13258 0
Isosphaera_pallida_ATCC_43644 0
Syntrophus_aciditrophicus_SB 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 0
Haliangium_ochraceum_DSM_14365 0
Asticcacaulis_excentricus_CB_48 1
Brevundimonas_subvibrioides_ATCC_15264 1
Caulobacter_sp._K31 1
Caulobacter_crescentus_NA1000 1
Caulobacter_segnis_ATCC_21756 1
Phenylobacterium_zucineum_HLK1 1
Maricaulis_maris_MCS10 1
Methylomicrobium_alcaliphilum 0
Methylomonas_methanica_MC09 0
Francisella_cf._novicida_3523 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Cryptococcus_neoformans_var._grubii_H99_ 0
Cryptococcus_neoformans_B-3501A_ 0
Cryptococcus_neoformans_JEC21_ 0
Coccidioides_posadasii_str._Silveira_ 1
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 0
Coccidioides_immitis_H538.4_ 0
Hordeum_vulgare_22   (Domesticated barley)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1
Neospora_caninum_Nc-Liverpool_6.2 0
Streptomyces_albus_J1074 0
Streptomyces_rapamycinicus_NRRL_5491 0
Streptomyces_davawensis_JCM_4913 0
Streptomyces_fulvissimus_DSM_40593 0
Streptomyces_collinus_Tu_365 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 0
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 0
Propionibacterium_acidipropionici_ATCC_4875 0
Actinoplanes_friuliensis_DSM_7358 1
Corynebacterium_maris_DSM_45190 0
Paenibacillus_polymyxa_E681 1
Emticicia_oligotrophica_DSM_17448 0
Desulfovibrio_vulgaris_RCH1 0
Desulfovibrio_vulgaris_str._Hildenborough 0
Caulobacter_crescentus_CB15 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Otolemur_garnettii_69_3   (Small-eared galago)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   0
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Ochotona_princeps_69   (American pika)   0
Sus_scrofa_69_10.2   (Pig)   1
Bos_taurus_69_3.1   (Cattle)   0
Vicugna_pacos_69_1   (Alpaca)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   0
Equus_caballus_69_2   (Horse)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   1
Pteropus_vampyrus_69_1   (Large flying fox)   0
Procavia_capensis_69_1   (Cape rock hyrax)   1
Loxodonta_africana_69_3   (African savanna elephant)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   0
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Meleagris_gallopavo_69_2   (Turkey)   0
Gallus_gallus_69_2   (Chicken)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Anolis_carolinensis_69_2.0   (Green anole)   0
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_69_1   (Coelacanth)   0
Gadus_morhua_69_1   (Atlantic cod)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Oryzias_latipes_69_1   (Japanese medaka)   0
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Danio_rerio_69_9   (Zebrafish)   0
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Loa_loa_v3.3_(Request)   (Eye worm)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
Malus_x_domestica_(Duplicate)   (Apple)   0
NCBI_plasmid_sequences_(Plasmids) 0
Protozoadb_2010_08_(Protozoadb) 0
STRING_v9.0.5_(STRING) 16
Uniprot_2018_03_genome 2166
NCBI_2017_08_genome 515
TargetDB__(Targets) 0

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