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  Home > SCOP hierarchy > Domain combination - 51445,52279,_gap_

Domain combinations for 51445,52279,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

51445 - (Trans)glycosidases
52279 - Beta-D-glucan exohydrolase, C-terminal domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Saccoglossus_kowalevskii_v3.0 3
Gallus_gallus_76_4   (Chicken)   1
Ciona_intestinalis_76   (Vase tunicate)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 23
Octopus_bimaculoides_280 1
Crassostrea_gigas_22   (Pacific oyster)   2
Lottia_gigantea_   (Owl limpet)   15
Helobdella_robusta_ 1
Capitella_sp._I_ 5
Strigamia_maritima_22 0
Hymenolepis_microstoma_ 1
Echinococcus_granulosus_ 1
Taenia_solium_   (Pork tapeworm)   1
Amphimedon_queenslandica 7
Proterospongia_sp._ATCC_50818_ 3
Monosiga_brevicollis_ 4
Sphaeroforma_arctica_JP610_ 2
Capsaspora_owczarzaki_ATCC_30864_ 1
Conidiobolus_coronatus_NRRL28638_v1.0 2
Mortierella_verticillata_NRRL_6337_ 0
Phycomyces_blakesleeanus_ 2
Rhizopus_oryzae_RA_99-880_ 5
Mucor_circinelloides_ 4
Rhizomucor_miehei_CAU432_ 6
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 4
Ustilago_maydis_ 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 3
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Melampsora_laricis-populina_ 3
Rhodotorula_graminis_WP1_v1.0 3
Sporobolomyces_roseus_IAM_13481_ 1
Wallemia_sebi_v1.0 3
Sphaerobolus_stellatus_v1.0 8
Piloderma_croceum_F_1598_v1.0 3
Serpula_lacrymans_var._lacrymans_S7.9_ 4
Coniophora_puteana 5
Hydnomerulius_pinastri_v2.0 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_microcarpus_441_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 1
Coprinopsis_cinerea_okayama7_130_v3 2
Pleurotus_ostreatus_   (Oyster mushroom)   7
Amanita_thiersii_Skay4041_v1.0 2
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1
Galerina_marginata_v1.0 4
Hebeloma_cylindrosporum_h7_v2.0 1
Laccaria_bicolor_S238N-H82_ 2
Agaricus_bisporus_var._bisporus_ 4
Schizophyllum_commune_ 6
Stereum_hirsutum_FP-91666_SS1__v1.0 9
Heterobasidion_annosum_ 6
Gloeophyllum_trabeumv1.0 5
Punctularia_strigosozonata_v1.0 7
Sebacina_vermifera_MAFF_305830_v1.0 4
Fomitiporia_mediterranea_v1.0 4
Tulasnella_calospora_AL13/4D_v1.0 3
Postia_placenta_ 2
Wolfiporia_cocos_MD-104_SS10__v1.0 3
Fomitopsis_pinicolav1.0 8
Fomitopsis_pinicola_FP-58527_SS1_v3.0 8
Phanerochaete_chrysosporium_RP-78_2.1 3
Dichomitus_squalens 4
Trametes_versicolor_v1.0 6
Tremella_mesenterica_   (Witches' butter)   2
Daldinia_eschscholzii_EC12_v1.0 14
Apiospora_montagnei_NRRL_25634_v1.0 13
Magnaporthe_poae_ATCC_64411_22 6
Magnaporthe_grisea_70-15_ 11
Podospora_anserina_ 8
Sporotrichum_thermophile_ATCC_42464_ 7
Thielavia_terrestris_NRRL_8126_ 8
Chaetomium_globosum_CBS_148.51_ 7
Neurospora_tetrasperma_ 6
Neurospora_discreta_FGSC_8579_ 4
Neurospora_crassa_OR74A_ 6
Cryphonectria_parasitica_   (Chestnut blight fungus)   11
Verticillium_albo-atrum_VaMs.102_ 10
Verticillium_dahliae_VdLs.17_ 9
Acremonium_alcalophilumv_1.0 6
Glomerella_graminicola_22 10
Fusarium_graminearum_ 10
Nectria_haematococca_mpVI_ 11
Fusarium_oxysporum_f._sp._lycopersici_4286_ 16
Fusarium_verticillioides_7600_ 11
Trichoderma_asperellum_CBS_433.97_v1.0 10
Trichoderma_atroviride_ 10
Trichoderma_citrinoviride_v1.0 7
Trichoderma_reesei_1.2 8
Trichoderma_virens_Gv29-8_ 11
Trichoderma_longibrachiatum_ATCC_18648_v1.0 7
Trichoderma_harzianum_CBS_226.95_v1.0 10
Amorphotheca_resinae_v1.0   (Creosote fungus)   3
Botrytis_cinerea_B05.10_ 9
Sclerotinia_sclerotiorum_ 7
Didymella_exigua_CBS_183.55_v1.0 7
Leptosphaeria_maculans_22 6
Setosphaeria_turcica_v1.0 7
Cochliobolus_miyabeanus_ATCC_44560_v1.0 9
Cochliobolus_victoriae_FI3_v1.0 9
Cochliobolus_carbonum_26-R-13_v1.0 10
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   9
Alternaria_brassicicola_ 4
Cochliobolus_lunatus_m118_v2.0 9
Pyrenophora_teres_f._teres_22 6
Pyrenophora_tritici-repentis_ 7
Stagonospora_nodorum_ 10
Mycosphaerella_graminicola_IPO323_ 10
Zasmidium_cellare_ATCC_36951_v1.0 12
Dothistroma_septosporum 8
Septoria_musiva_v1.0 7
Mycosphaerella_fijiensis_CIRAD86_ 9
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 14
Paracoccidioides_brasiliensis_Pb18_ 2
Coccidioides_posadasii_RMSCC_3488_ 2
Coccidioides_immitis_RS_ 2
Ajellomyces_dermatitidis_SLH14081_ 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3
Microsporum_canis_CBS_113480_ 3
Trichophyton_equinum_CBS_127.97_ 3
Trichophyton_verrucosum_HKI_0517_ 2
Arthroderma_benhamiae_CBS_112371_ 2
Trichophyton_tonsurans_CBS_112818_ 3
Trichophyton_rubrum_CBS_118892_ 3
Uncinocarpus_reesii_1704_ 2
Aspergillus_zonatus_v1.0 6
Penicillium_chrysogenum_Wisconsin_54-1255_ 8
Penicillium_chrysogenum_v1.0 8
Aspergillus_acidus_v1.0 9
Aspergillus_fumigatus_Af293 8
Aspergillus_brasiliensis_v1.0 10
Aspergillus_nidulans_FGSC_A4_ 9
Aspergillus_sydowii_v1.0 18
Aspergillus_versicolor_v1.0 18
Aspergillus_glaucus 8
Aspergillus_carbonarius_ITEM_5010_ 8
Neosartorya_fischeri_NRRL_181_ 9
Aspergillus_terreus_NIH2624_ 13
Aspergillus_tubingensis_v1.0 8
Aspergillus_wentii_v1.0 10
Aspergillus_oryzae_RIB40_ 14
Aspergillus_niger_22 10
Aspergillus_niger_ATCC_1015_ 7
Aspergillus_flavus_NRRL3357_ 14
Aspergillus_clavatus_NRRL_1_ 5
Penicillium_marneffei_ATCC_18224_ 6
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Hansenula_polymorpha_v2.0 1
Candida_dubliniensis_CD36_ 1
Candida_parapsilosis_ 1
Candida_albicans_SC5314 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1
Pichia_stipitis_CBS_6054_ 1
Candida_guilliermondii_ATCC_6260_ 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1
Debaromyces_hansenii 1
Wickerhamomyces_anomalus 3
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 3
Candida_lusitaniae_ATCC_42720_ 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1
Spizellomyces_punctatus_DAOM_BR117_ 1
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Entamoeba_dispar_1.2 1
Entamoeba_invadens_1.2 2
Entamoeba_histolytica_1 1
Selaginella_moellendorffii_ 8
Pinus_taeda   (Loblolly pine)   13
Picea_abies   (Norway spruce)   8
Eucalyptus_grandis_v201   (Rose gum)   15
Theobroma_cacao_B97-61/B2_v1   (Cacao)   15
Gossypium_raimondii_v221 22
Citrus_clementina_v165 12
Citrus_sinensis_v154   (Sweet orange)   16
Thellungiella_halophila_v173 7
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   12
Capsella_rubella_v183 8
Arabidopsis_lyrata_   (Lyrate rockcress)   7
Arabidopsis_thaliana_10   (Thale cress)   8
Carica_papaya_   (Papaya)   8
Medicago_truncatula_   (Barrel medic)   13
Phaseolus_vulgaris_v186   (French bean)   9
Glycine_max_v109   (Soybean)   14
Cucumis_sativus_v122   (Cucumber)   8
Fragaria_vesca_   (Wild strawberry)   5
Malus_domestica_v196   (Apple)   18
Prunus_persica_v139   (Peach)   7
Linum_usitatissimum_v200   (Flax)   9
Manihot_esculenta_v147   (Cassava)   10
Populus_trichocarpa_v156   (Black cottonwood)   13
Vitis_vinifera_   (Wine grape)   9
Mimulus_guttatus_v140   (Spotted monkey flower)   23
Solanum_lycopersicum_v.2.3   (Tomato)   8
Solanum_tuberosum_   (Potato)   8
Actinidia_chinensis_Hongyang_ 6
Aquilegia_coerulea_v195 15
Triticum_urartu_22 5
Triticum_aestivum_22   (Bread wheat)   13
Aegilops_tauschii_22 4
Brachypodium_distachyon_   (Stiff brome)   9
Oryza_barthii_22   (African wild rice)   9
Oryza_meridionalis_22 10
Oryza_glumaepatula_22 12
Oryza_glaberrima   (African rice)   8
Oryza_punctata_22 8
Oryza_nivara_22 17
Oryza_brachyantha_22   (Malo sina)   7
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   10
Oryza_sativa_v193   (Rice)   10
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   10
Panicum_virgatum_v202   (Switchgrass)   13
Setaria_italica_v164   (Foxtail millet)   9
Zea_mays_subsp._mays_   (Maize)   11
Zea_mays_v181   (Maize)   10
Sorghum_bicolor_   (Sorghum)   9
Musa_balbisiana   (Balbis banana)   11
Musa_acuminata_22   (Wild Malaysian banana)   12
Amborella_trichopoda_22 7
Physcomitrella_patens 2
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Bigelowiella_natans_CCMP2755_22 5
Ectocarpus_siliculosus 1
Aureococcus_anophagefferens_ 4
Albugo_laibachii_22 3
Pythium_iwayamai_DAOM_BR242034_22 6
Pythium_arrhenomanes_ATCC_12531_22 4
Pythium_ultimum_v1.7-2 6
Pythium_aphanidermatum_DAOM_BR444_22 6
Pythium_irregulare_DAOM_BR486_22 5
Pythium_vexans_DAOM_BR484_22 8
Phytophthora_ramorum_1.1   (Sudden oak death agent)   21
Phytophthora_sojae_1.1 20
Phytophthora_infestans_T30-4_ 12
Phytophthora_capsici_ 19
Hyaloperonospora_arabidopsidis_22 6
Phaeodactylum_tricornutumCCAP_1055/1 2
Fragilariopsis_cylindrus 1
Paramecium_tetraurelia_ 1
Symbiodinium_minutum_clade_B1_v1.2 2
Trichomonas_vaginalis_ 1
Emiliania_huxleyi_CCMP1516_ 12
Thermobaculum_terrenum_ATCC_BAA-798 2
Conexibacter_woesei_DSM_14684 1
Olsenella_uli_DSM_7084 1
Coriobacterium_glomerans_PW2 1
Nakamurella_multipartita_DSM_44233 1
Acidothermus_cellulolyticus_11B 1
Modestobacter_marinus 4
Kineococcus_radiotolerans_SRS30216 5
Catenulispora_acidiphila_DSM_44928 2
Stackebrandtia_nassauensis_DSM_44728 1
Frankia_sp._EAN1pec 6
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 2
Streptosporangium_roseum_DSM_43021 1
Kitasatospora_setae_KM-6054 1
Streptomyces_coelicolor_A3(2) 3
Streptomyces_sp._PAMC26508 4
Streptomyces_flavogriseus_ATCC_33331 4
Streptomyces_sp._SirexAA-E 3
Streptomyces_griseus_subsp._griseus_NBRC_13350 1
Streptomyces_bingchenggensis_BCW-1 4
Streptomyces_violaceusniger_Tu_4113 5
Streptomyces_avermitilis_MA-4680 1
Streptomyces_scabiei_87.22 4
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Actinosynnema_mirum_DSM_43827 5
Saccharomonospora_viridis_DSM_43017 1
Amycolatopsis_mediterranei_U32 4
Kribbella_flavida_DSM_17836 2
Microlunatus_phosphovorus_NM-1 4
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 1
Salinispora_arenicola_CNS-205 0
Salinispora_tropica_CNB-440 0
Verrucosispora_maris_AB-18-032 1
Micromonospora_sp._L5 1
Micromonospora_aurantiaca_ATCC_27029 1
Actinoplanes_sp._N902-109 4
Actinoplanes_sp._SE50/110 2
Actinoplanes_missouriensis_431 5
Tsukamurella_paurometabola_DSM_20162 1
Gordonia_sp._KTR9 1
Gordonia_polyisoprenivorans_VH2 1
Rhodococcus_jostii_RHA1 1
Rhodococcus_equi_103S 1
Rhodococcus_erythropolis_PR4 1
Nocardia_cyriacigeorgica_GUH-2 1
Nocardia_farcinica_IFM_10152 2
Mycobacterium_intracellulare_ATCC_13950 1
Mycobacterium_avium_104 1
Mycobacterium_canettii_CIPT_140010059 1
Mycobacterium_tuberculosis_KZN_1435 1
Mycobacterium_tuberculosis 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1
Mycobacterium_rhodesiae_NBB3 1
Mycobacterium_ulcerans_Agy99 1
Mycobacterium_marinum_M 1
Mycobacterium_smegmatis_str._MC2_155 2
Corynebacterium_variabile_DSM_44702 1
Sanguibacter_keddieii_DSM_10542 5
Beutenbergia_cavernae_DSM_12333 3
Microbacterium_testaceum_StLB037 3
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 4
Jonesia_denitrificans_DSM_20603 3
Brachybacterium_faecium_DSM_4810 2
Isoptericola_variabilis_225 2
Xylanimonas_cellulosilytica_DSM_15894 2
Cellulomonas_flavigena_DSM_20109 3
Cellulomonas_fimi_ATCC_484 5
[Cellvibrio]_gilvus_ATCC_13127 3
Arthrobacter_phenanthrenivorans_Sphe3 2
Arthrobacter_chlorophenolicus_A6 1
Arthrobacter_aurescens_TC1 3
Arthrobacter_arilaitensis_Re117 1
Arthrobacter_sp._Rue61a 6
Arthrobacter_sp._FB24 1
Bifidobacterium_longum_subsp._longum_JDM301 2
Bifidobacterium_animalis_subsp._lactis_Bl-04 2
Bifidobacterium_dentium_Bd1 5
Bifidobacterium_breve_ACS-071-V-Sch8b 3
Bifidobacterium_adolescentis_ATCC_15703 3
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 2
Anaerolinea_thermophila_UNI-1 2
Herpetosiphon_aurantiacus_DSM_785 2
Roseiflexus_castenholzii_DSM_13941 1
Chloroflexus_sp._Y-400-fl 2
Chloroflexus_aggregans_DSM_9485 1
Chloroflexus_aurantiacus_J-10-fl 2
Deinococcus_gobiensis_I-0 1
Deinococcus_proteolyticus_MRP 1
Meiothermus_silvanus_DSM_9946 1
Clostridiales_genomosp._BVAB3_str._UPII9-5 2
Clostridium_clariflavum_DSM_19732 1
Eubacterium_siraeum 2
Clostridium_cellulolyticum_H10 3
Clostridium_thermocellum_ATCC_27405 1
Faecalibacterium_prausnitzii 1
Ruminococcus_sp. 2
Ruminococcus_albus_7 2
Sulfobacillus_acidophilus_DSM_10332 1
Acetobacterium_woodii_DSM_1030 1
Eubacterium_limosum_KIST612 1
Clostridium_phytofermentans_ISDg 4
Clostridium_lentocellum_DSM_5427 3
[Ruminococcus]_obeum 1
[Ruminococcus]_torques 2
Eubacterium_rectale_M104/1 1
Eubacterium_rectale_ATCC_33656 2
Roseburia_hominis_A2-183 1
Roseburia_intestinalis 4
Butyrivibrio_proteoclasticus_B316 2
Butyrivibrio_fibrisolvens 2
Clostridium_sp._BNL1100 3
Clostridium_beijerinckii_NCIMB_8052 5
Clostridium_cellulovorans_743B 2
Mahella_australiensis_50-1_BON 3
Caldicellulosiruptor_obsidiansis_OB47 1
Caldicellulosiruptor_kronotskyensis_2002 1
Caldicellulosiruptor_hydrothermalis_108 1
Caldicellulosiruptor_owensensis_OL 1
Caldicellulosiruptor_lactoaceticus_6A 1
Caldicellulosiruptor_kristjanssonii_177R1B 1
Caldicellulosiruptor_saccharolyticus_DSM_8903 2
Caldicellulosiruptor_bescii_DSM_6725 1
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 2
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 1
Thermoanaerobacter_pseudethanolicus_ATCC_33223 1
Thermoanaerobacter_italicus_Ab9 1
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 1
Halothermothrix_orenii_H_168 1
Halanaerobium_praevalens_DSM_2228 1
Carnobacterium_sp._17-4 2
Carnobacterium_sp._WN1359 1
Tetragenococcus_halophilus_NBRC_12172 1
Enterococcus_sp._7L76 1
Enterococcus_hirae_ATCC_9790 2
Enterococcus_faecalis_62 1
Oenococcus_oeni_PSU-1 1
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 1
Lactobacillus_casei_ATCC_334 1
Lactobacillus_rhamnosus_Lc_705 1
Lactobacillus_gasseri_ATCC_33323 1
Lactobacillus_buchneri_NRRL_B-30929 1
Lactobacillus_buchneri 1
Lactobacillus_brevis_ATCC_367 1
Lactococcus_lactis_subsp._cremoris_MG1363 1
Streptococcus_suis_P1/7 1
Streptococcus_sanguinis_SK36 0
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 2
Paenibacillus_sp._JDR-2 4
Paenibacillus_terrae_HPL-003 4
Paenibacillus_mucilaginosus_3016 2
Paenibacillus_polymyxa_M1 2
Listeria_welshimeri_serovar_6b_str._SLCC5334 2
Listeria_innocua_Clip11262 1
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 2
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 2
Listeria_ivanovii_subsp._ivanovii_PAM_55 2
Oceanobacillus_iheyensis_HTE831 1
Geobacillus_sp._GHH01 1
Halobacillus_halophilus_DSM_2266 0
Bacillus_weihenstephanensis_KBAB4 1
Bacillus_clausii_KSM-K16 1
Bacillus_cellulosilyticus_DSM_2522 1
Melioribacter_roseus_P3M 3
Ignavibacterium_album_JCM_16511 1
Haliscomenobacter_hydrossis_DSM_1100 1
Niastella_koreensis_GR20-10 7
Chitinophaga_pinensis_DSM_2588 3
Salinibacter_ruber_M8 0
Rhodothermus_marinus_DSM_4252 3
Marivirga_tractuosa_DSM_4126 2
Leadbetterella_byssophila_DSM_17132 2
Cytophaga_hutchinsonii_ATCC_33406 4
Parabacteroides_distasonis_ATCC_8503 5
Tannerella_forsythia_ATCC_43037 2
Paludibacter_propionicigenes_WB4 7
Odoribacter_splanchnicus_DSM_20712 1
Bacteroides_sp._CF50 1
Prevotella_melaninogenica_ATCC_25845 1
Prevotella_ruminicola_23 7
Alistipes_finegoldii_DSM_17242 5
Bacteroides_salanitronis_DSM_18170 6
Bacteroides_helcogenes_P_36-108 6
Bacteroides_vulgatus_ATCC_8482 3
Bacteroides_thetaiotaomicron_VPI-5482 5
Bacteroides_fragilis_YCH46 5
Pedobacter_saltans_DSM_12145 3
Solitalea_canadensis_DSM_3403 9
Pedobacter_heparinus_DSM_2366 4
Sphingobacterium_sp._21 2
Zunongwangia_profunda_SM-A87 6
Gramella_forsetii_KT0803 2
Robiginitalea_biformata_HTCC2501 1
Zobellia_galactanivorans 3
Muricauda_ruestringensis_DSM_13258 1
Cellulophaga_algicola_DSM_14237 2
Cellulophaga_lytica_DSM_7489 2
Flavobacteriaceae_bacterium_3519-10 1
Capnocytophaga_canimorsus_Cc5 1
Capnocytophaga_ochracea_DSM_7271 3
Flavobacterium_branchiophilum_FL-15 1
Flavobacterium_johnsoniae_UW101 8
Methylacidiphilum_infernorum_V4 1
Opitutus_terrae_PB90-1 4
Brachyspira_murdochii_DSM_12563 1
Brachyspira_intermedia_PWS/A 1
Brachyspira_hyodysenteriae_WA1 1
Spirochaeta_smaragdinae_DSM_11293 3
Sphaerochaeta_pleomorpha_str._Grapes 3
Sphaerochaeta_globus_str._Buddy 3
Sphaerochaeta_coccoides_DSM_17374 1
Spirochaeta_caldaria_DSM_7334 1
Treponema_azotonutricium_ZAS-9 2
Spirochaeta_africana_DSM_8902 1
Spirochaeta_thermophila_DSM_6192 2
Petrotoga_mobilis_SJ95 1
Mesotoga_prima_MesG1.Ag.4.2 1
Fervidobacterium_pennivorans_DSM_9078 1
Fervidobacterium_nodosum_Rt17-B1 2
Thermosipho_africanus_TCF52B 1
Thermotoga_lettingae_TMO 1
Thermotoga_thermarum_DSM_5069 2
Thermotoga_sp._RQ2 3
Thermotoga_naphthophila_RKU-10 2
Thermotoga_petrophila_RKU-1 2
Thermotoga_neapolitana_DSM_4359 2
Thermotoga_maritima_MSB8 2
Dictyoglomus_turgidum_DSM_6724 4
Dictyoglomus_thermophilum_H-6-12 3
Candidatus_Solibacter_usitatus_Ellin6076 2
Granulicella_tundricola_MP5ACTX9 3
Granulicella_mallensis_MP5ACTX8 7
Candidatus_Koribacter_versatilis_Ellin345 2
Terriglobus_saanensis_SP1PR4 1
Terriglobus_roseus_DSM_18391 2
Acidobacterium_capsulatum_ATCC_51196 3
Haliangium_ochraceum_DSM_14365 0
Sorangium_cellulosum_'So_ce_56' 1
Anaeromyxobacter_sp._Fw109-5 1
Stigmatella_aurantiaca_DW4/3-1 3
Corallococcus_coralloides_DSM_2259 0
Myxococcus_fulvus_HW-1 0
Cupriavidus_metallidurans_CH34 1
Burkholderia_sp._CCGE1002 3
Burkholderia_thailandensis_E264 1
Burkholderia_pseudomallei_1106a 1
Burkholderia_ambifaria_AMMD 3
Burkholderia_cenocepacia_HI2424 2
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_vietnamiensis_G4 1
Burkholderia_gladioli_BSR3 1
Burkholderia_glumae_BGR1 1
Verminephrobacter_eiseniae_EF01-2 1
Ramlibacter_tataouinensis_TTB310 1
Variovorax_paradoxus_S110 2
Rhodoferax_ferrireducens_T118 1
Herbaspirillum_seropedicae_SmR1 1
Asticcacaulis_excentricus_CB_48 9
Brevundimonas_subvibrioides_ATCC_15264 3
Caulobacter_sp._K31 7
Caulobacter_crescentus_NA1000 5
Caulobacter_segnis_ATCC_21756 5
Phenylobacterium_zucineum_HLK1 1
Sphingopyxis_alaskensis_RB2256 2
Novosphingobium_sp._PP1Y 2
Novosphingobium_aromaticivorans_DSM_12444 2
Sphingobium_japonicum_UT26S 5
Sphingobium_chlorophenolicum_L-1 5
Sphingomonas_sp._MM-1 5
Maricaulis_maris_MCS10 3
Hirschia_baltica_ATCC_49814 5
Rhodobacter_capsulatus_SB_1003 1
Rhodospirillum_rubrum_F11 1
Gluconacetobacter_xylinus_NBRC_3288 2
Gluconacetobacter_diazotrophicus_PAl_5 1
Acidiphilium_multivorum_AIU301 1
Acidiphilium_cryptum_JF-5 1
Micavibrio_aeruginosavorus_ARL-13 1
Methylobacterium_chloromethanicum_CM4 1
Methylobacterium_extorquens_AM1 1
Methylobacterium_populi_BJ001 1
Methylobacterium_nodulans_ORS_2060 1
Agrobacterium_radiobacter_K84 2
Methylocella_silvestris_BL2 1
Rhodomicrobium_vannielii_ATCC_17100 1
Methylocystis_sp._SC2 1
Saccharophagus_degradans_2-40 1
Teredinibacter_turnerae_T7901 1
Cellvibrio_japonicus_Ueda107 3
Oceanimonas_sp._GK1 1
Tolumonas_auensis_DSM_9187 2
Aeromonas_veronii_B565 1
Aeromonas_salmonicida_subsp._salmonicida_A449 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 0
Vibrio_anguillarum_775 1
Photobacterium_profundum_SS9 1
Shewanella_denitrificans_OS217 1
Shewanella_baltica_OS185 0
Shewanella_woodyi_ATCC_51908 2
Shewanella_amazonensis_SB2B 1
Shewanella_frigidimarina_NCIMB_400 0
Colwellia_psychrerythraea_34H 2
Pseudoalteromonas_atlantica_T6c 2
Glaciecola_sp._4H-3-7+YE-5 3
Glaciecola_nitratireducens_FR1064 1
Alteromonas_sp._SN2 1
Marinomonas_posidonica_IVIA-Po-181 1
Marinomonas_sp._MWYL1 2
Methylomonas_methanica_MC09 1
Rhodanobacter_denitrificans 1
Pseudoxanthomonas_spadix_BD-a59 2
Pseudoxanthomonas_suwonensis_11-1 2
Stenotrophomonas_maltophilia_K279a 2
Xylella_fastidiosa_M23 1
Xanthomonas_axonopodis_pv._citri_str._306 2
Xanthomonas_albilineans_GPE_PC73 2
Xanthomonas_oryzae_pv._oryzae_PXO99A 3
Xanthomonas_campestris_pv._campestris_str._B100 3
Edwardsiella_ictaluri_93-146 1
Edwardsiella_tarda_EIB202 1
Rahnella_sp._Y9602 2
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 2
Yersinia_pseudotuberculosis_IP_31758 2
Yersinia_pestis_Pestoides_F 2
Serratia_sp._AS12 1
Serratia_sp._ATCC_39006 2
Serratia_plymuthica_AS9 1
Serratia_proteamaculans_568 1
Dickeya_dadantii_Ech703 1
Dickeya_zeae_Ech1591 1
Pectobacterium_wasabiae_WPP163 1
Pectobacterium_sp._SCC3193 1
Pectobacterium_atrosepticum_SCRI1043 1
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1
Pantoea_sp._At-9b 2
Pantoea_vagans_C9-1 1
Pantoea_ananatis_LMG_20103 2
Erwinia_tasmaniensis_Et1/99 1
Erwinia_sp._Ejp617 1
Erwinia_billingiae_Eb661 2
Erwinia_pyrifoliae_Ep1/96 1
Erwinia_amylovora_ATCC_49946 1
Escherichia_blattae_DSM_4481 2
Cronobacter_turicensis_z3032 2
Cronobacter_sakazakii_ES15 2
Enterobacteriaceae_bacterium_strain_FGI_57 3
Shigella_sonnei_Ss046 1
Shigella_flexneri_5_str._8401 1
Shigella_dysenteriae_Sd197 1
Shigella_boydii_CDC_3083-94 1
Salmonella_bongori_NCTC_12419 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1
Klebsiella_oxytoca_E718 2
Klebsiella_variicola_At-22 1
Klebsiella_pneumoniae_NTUH-K2044 1
Enterobacter_aerogenes_KCTC_2190 2
Escherichia_fergusonii_ATCC_35469 1
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 1
Enterobacter_sp._R4-368 2
Enterobacter_sp._638 1
Enterobacter_asburiae_LF7a 2
Enterobacter_cloacae_subsp._dissolvens_SDM 2
Citrobacter_rodentium_ICC168 2
Citrobacter_koseri_ATCC_BAA-895 0
Pseudomonas_sp._TKP 2
Pseudomonas_sp._UW4 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_entomophila_L48 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1
Pseudomonas_stutzeri_A1501 1
Pseudomonas_putida_F1 1
Pseudomonas_protegens_Pf-5 1
Pseudomonas_fluorescens_SBW25 1
Pseudomonas_mendocina_ymp 1
Pseudomonas_aeruginosa_UCBPP-PA14 1
Pseudomonas_sp._VLB120 1
Acidilobus_saccharovorans_345-15 1
Ignisphaera_aggregans_DSM_17230 2
Sulfolobus_islandicus_Y.N.15.51 1
Sulfolobus_solfataricus_P2 1
Thermofilum_sp._1910b 1
Thermofilum_pendens_Hrk_5 1
Caldivirga_maquilingensis_IC-167 1
Methanocella_arvoryzae_MRE50 1
Methanocella_paludicola_SANAE 1
Salinarchaeum_sp._Harcht-Bsk1 1
Halopiger_xanaduensis_SH-6 7
Haloterrigena_turkmenica_DSM_5511 2
Halogeometricum_borinquense_DSM_11551 1
Haloferax_volcanii_DS2 2
Halorhabdus_utahensis_DSM_12940 7
Haloarcula_hispanica_ATCC_33960 2
Haloarcula_marismortui_ATCC_43049 2
Halalkalicoccus_jeotgali_B3 2

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Cryptococcus_neoformans_var._grubii_H99_ 2
Cryptococcus_neoformans_B-3501A_ 1
Cryptococcus_neoformans_JEC21_ 2
Paracoccidioides_brasiliensis_Pb01_ 2
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_posadasii_str._Silveira_ 2
Coccidioides_immitis_RMSCC_3703_ 2
Coccidioides_immitis_RMSCC_2394_ 2
Coccidioides_immitis_H538.4_ 2
Ajellomyces_dermatitidis_ER-3_ 3
Histoplasma_capsulatum_H143 2
Histoplasma_capsulatum_H88 2
Histoplasma_capsulatum_G186AR 2
Aspergillus_fumigatus_A1163_ 8
Candida_albicans_WO-1_ 1
Batrachochytrium_dendrobatidis_JAM81_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   12
Hordeum_vulgare_22   (Domesticated barley)   18
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   8
Cyanobium_gracile_PCC_6307 1
Frankia_sp._EuI1c 2
Nocardiopsis_alba_ATCC_BAA-2165 1
Streptomyces_albus_J1074 1
Streptomyces_rapamycinicus_NRRL_5491 4
Streptomyces_davawensis_JCM_4913 1
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_venezuelae_ATCC_10712 1
Streptomyces_collinus_Tu_365 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Saccharothrix_espanaensis_DSM_44229 2
Amycolatopsis_mediterranei_RB 4
Amycolatopsis_mediterranei_S699 4
Amycolatopsis_mediterranei_S699 4
Amycolatopsis_orientalis_HCCB10007 1
Propionibacterium_avidum_44067 1
Propionibacterium_acnes_ATCC_11828 1
Propionibacterium_acidipropionici_ATCC_4875 3
Actinoplanes_friuliensis_DSM_7358 3
Rhodococcus_pyridinivorans_SB3094 1
Rhodococcus_erythropolis_CCM2595 1
Mycobacterium_sp._MOTT36Y 1
Mycobacterium_yongonense_05-1390 1
Mycobacterium_intracellulare_MOTT-64 1
Mycobacterium_indicus_pranii_MTCC_9506 1
Mycobacterium_intracellulare_MOTT-02 1
Mycobacterium_avium_subsp._paratuberculosis_MAP4 1
Mycobacterium_avium_subsp._paratuberculosis_K-10 1
Mycobacterium_canettii_CIPT_140070017 1
Mycobacterium_canettii_CIPT_140060008 1
Mycobacterium_canettii_CIPT_140070008 1
Mycobacterium_canettii_CIPT_140070010 1
Mycobacterium_tuberculosis_EAI5/NITR206 1
Mycobacterium_tuberculosis_EAI5 1
Mycobacterium_tuberculosis_CAS/NITR204 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 1
Mycobacterium_tuberculosis_UT205 1
Mycobacterium_tuberculosis_RGTB423 1
Mycobacterium_tuberculosis_RGTB327 1
Mycobacterium_tuberculosis_CTRI-2 1
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 1
Mycobacterium_tuberculosis_KZN_605 1
Mycobacterium_tuberculosis_KZN_4207 1
Mycobacterium_tuberculosis_CCDC5180 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_CCDC5079 1
Mycobacterium_tuberculosis_H37Ra 1
Mycobacterium_tuberculosis_str._Haarlem/NITR202 1
Mycobacterium_tuberculosis_str._Haarlem 1
Mycobacterium_tuberculosis_F11 1
Mycobacterium_tuberculosis_H37Rv 1
Mycobacterium_tuberculosis_CDC1551 1
Mycobacterium_bovis_AF2122/97 1
Mycobacterium_bovis_BCG_str._Korea_1168P 1
Mycobacterium_bovis_BCG_str._Mexico 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1
Mycobacterium_smegmatis_str._MC2_155 2
Mycobacterium_kansasii_ATCC_12478 2
Corynebacterium_maris_DSM_45190 1
Corynebacterium_terpenotabidum_Y-11 1
Clavibacter_michiganensis_subsp._sepedonicus 3
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1
Bifidobacterium_longum_NCC2705 1
Bifidobacterium_longum_DJO10A 2
Bifidobacterium_longum_subsp._infantis_157F 3
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._longum_KACC_91563 3
Bifidobacterium_longum_subsp._longum_BBMN68 2
Bifidobacterium_longum_subsp._longum_F8 2
Bifidobacterium_longum_subsp._longum_JCM_1217 1
Bifidobacterium_thermophilum_RBL67 1
Bifidobacterium_animalis_subsp._animalis_ATCC_25527 1
Bifidobacterium_animalis_subsp._lactis_Bl12 2
Bifidobacterium_animalis_subsp._lactis_B420 2
Bifidobacterium_animalis_subsp._lactis_ATCC_27673 1
Bifidobacterium_animalis_subsp._lactis_BLC1 2
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 2
Bifidobacterium_animalis_subsp._lactis_Bi-07 2
Bifidobacterium_animalis_subsp._lactis_V9 2
Bifidobacterium_animalis_subsp._lactis_DSM_10140 2
Bifidobacterium_animalis_subsp._lactis_BB-12 2
Bifidobacterium_animalis_subsp._lactis_AD011 2
Bifidobacterium_breve_UCC2003 2
Bifidobacterium_asteroides_PRL2011 3
Actinomyces_graevenitzii_C83_ 0
Actinomyces_odontolyticus_ATCC_17982 1
Deinococcus_peraridilitoris_DSM_19664 1
Eubacterium_siraeum_V10Sc8a 2
Clostridium_thermocellum_DSM_1313 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 3
Faecalibacterium_prausnitzii_L2-6 1
Ruminococcus_champanellensis_18P13 1
Sulfobacillus_acidophilus_TPY 1
Roseburia_intestinalis_XB6B4 9
Clostridium_saccharobutylicum_DSM_13864 2
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 4
Thermoanaerobacterium_thermosaccharolyticum_M0795 1
Carnobacterium_maltaromaticum_LMA28 3
Enterococcus_casseliflavus_EC20 3
Enterococcus_faecalis_str._Symbioflor_1 1
Enterococcus_faecalis_D32 1
Enterococcus_faecalis_OG1RF 1
Enterococcus_faecalis_V583 1
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 1
Lactobacillus_paracasei_subsp._paracasei_8700:2 1
Lactobacillus_casei_LOCK919 1
Lactobacillus_casei_W56 1
Lactobacillus_casei_LC2W 1
Lactobacillus_casei_BD-II 1
Lactobacillus_casei_BL23 1
Lactobacillus_casei_str._Zhang 1
Lactobacillus_rhamnosus_LOCK908 1
Lactobacillus_rhamnosus_LOCK900 1
Lactobacillus_rhamnosus_ATCC_8530 1
Lactobacillus_rhamnosus_GG 1
Lactobacillus_rhamnosus_GG 1
Lactobacillus_brevis_KB290 2
Lactococcus_lactis_subsp._cremoris_NZ9000 1
Streptococcus_suis_T15 1
Streptococcus_suis_SC070731 1
Streptococcus_suis_S735 1
Streptococcus_suis_SS12 1
Streptococcus_suis_ST1 1
Streptococcus_suis_A7 1
Streptococcus_suis_JS14 1
Streptococcus_suis_BM407 1
Streptococcus_suis_SC84 1
Streptococcus_suis_GZ1 1
Streptococcus_suis_98HAH33 1
Streptococcus_suis_05ZYH33 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 2
Thermobacillus_composti_KWC4 3
Paenibacillus_sp._Y412MC10 6
Paenibacillus_mucilaginosus_KNP414 2
Paenibacillus_mucilaginosus_K02 2
Paenibacillus_polymyxa_CR1 5
Paenibacillus_polymyxa_SC2 2
Paenibacillus_polymyxa_E681 1
Listeria_monocytogenes_EGD_sequence 2
Listeria_monocytogenes_serotype_4b_str._LL195 2
Listeria_monocytogenes_07PF0776 2
Listeria_monocytogenes_M7 2
Listeria_monocytogenes_J1-220 2
Listeria_monocytogenes_J1816 2
Listeria_monocytogenes_SLCC2376 2
Listeria_monocytogenes_SLCC5850 2
Listeria_monocytogenes_ATCC_19117 2
Listeria_monocytogenes_L312 2
Listeria_monocytogenes_SLCC2479 2
Listeria_monocytogenes_SLCC7179 2
Listeria_monocytogenes_SLCC2540 2
Listeria_monocytogenes_SLCC2378 2
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 2
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 2
Listeria_monocytogenes_serotype_7_str._SLCC2482 2
Listeria_monocytogenes_08-5578 2
Listeria_monocytogenes_08-5923 2
Listeria_monocytogenes_L99 2
Listeria_monocytogenes_HCC23 2
Listeria_monocytogenes_10403S 2
Listeria_monocytogenes_J0161 2
Listeria_monocytogenes_Finland_1998 2
Listeria_monocytogenes_FSL_R2-561 2
Listeria_monocytogenes_serotype_4b_str._F2365 2
Listeria_monocytogenes_EGD-e 2
Amphibacillus_xylanus_NBRC_15112 1
Bacillus_infantis_NRRL_B-14911 1
Bacillus_toyonensis_BCT-7112 1
Bacillus_thuringiensis_MC28 1
Salinibacter_ruber_DSM_13855 0
Rhodothermus_marinus_SG0.5JP17-172 3
Echinicola_vietnamensis_DSM_17526 3
Emticicia_oligotrophica_DSM_17448 0
Prevotella_dentalis_DSM_3688 3
Alistipes_shahii_WAL_8301 5
Bacteroides_xylanisolvens_XB1A 9
Bacteroides_fragilis_638R 5
Bacteroides_fragilis_NCTC_9343 5
Nonlabens_dokdonensis_DSW-6 1
Psychroflexus_torquis_ATCC_700755 1
Spirochaeta_thermophila_DSM_6578 3
Thermotoga_maritima_MSB8 2
Sorangium_cellulosum_So0157-2 2
Pandoraea_pnomenusa_3kgm 1
Burkholderia_sp._KJ006 1
Burkholderia_thailandensis_MSMB121 2
Burkholderia_pseudomallei_MSHR305 1
Burkholderia_pseudomallei_NCTC_13179 1
Burkholderia_pseudomallei_BPC006 1
Burkholderia_pseudomallei_1026b 1
Burkholderia_pseudomallei_1710b 0
Burkholderia_pseudomallei_K96243 1
Burkholderia_lata 1
Burkholderia_ambifaria_MC40-6 2
Burkholderia_cenocepacia_MC0-3 2
Burkholderia_cenocepacia_AU_1054 2
Burkholderia_cenocepacia_J2315 2
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_cepacia_GG4 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 1
Variovorax_paradoxus_B4 1
Variovorax_paradoxus_EPS 1
Caulobacter_crescentus_CB15 5
Rhodospirillum_rubrum_ATCC_11170 1
Gluconacetobacter_diazotrophicus_PAl_5 1
Micavibrio_aeruginosavorus_EPB 1
Methylobacterium_extorquens_DM4 1
Methylobacterium_extorquens_PA1 1
Rhizobium_tropici_CIAT_899 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1
Rhodopseudomonas_palustris_BisB18 1
Simiduia_agarivorans_SA1_=_DSM_21679 2
Aeromonas_hydrophila_ML09-119 1
Vibrio_sp._EJY3 2
Vibrio_anguillarum_Listonella_anguillarum_M3 1
Shewanella_baltica_BA175 0
Shewanella_baltica_OS678 0
Shewanella_baltica_OS117 0
Shewanella_baltica_OS223 0
Shewanella_baltica_OS195 0
Shewanella_baltica_OS155 0
Glaciecola_psychrophila_170 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 1
Alteromonas_macleodii_AltDE1 1
Alteromonas_macleodii_str._'Black_Sea_11' 1
Alteromonas_macleodii_ATCC_27126 1
Stenotrophomonas_maltophilia_D457 2
Stenotrophomonas_maltophilia_JV3 1
Stenotrophomonas_maltophilia_R551-3 1
Xylella_fastidiosa_subsp._fastidiosa_GB514 1
Xylella_fastidiosa_M12 1
Xylella_fastidiosa_Temecula1 1
Xylella_fastidiosa_9a5c 1
Xanthomonas_citri_subsp._citri_Aw12879 2
Xanthomonas_campestris_pv._vesicatoria_str._85-10 2
Xanthomonas_axonopodis_pv._citrumelo_F1 2
Xanthomonas_axonopodis_Xac29-1 2
Xanthomonas_oryzae_pv._oryzicola_BLS256 3
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 2
Xanthomonas_oryzae_pv._oryzae_KACC_10331 2
Xanthomonas_campestris_pv._raphani_756C 3
Xanthomonas_campestris_pv._campestris_str._8004 3
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 3
Edwardsiella_tarda_C07-087 1
Edwardsiella_tarda_FL6-60 1
Rahnella_aquatilis_HX2 2
Yersinia_pseudotuberculosis_PB1/+ 2
Yersinia_pseudotuberculosis_YPIII 2
Yersinia_pseudotuberculosis_IP_32953 2
Yersinia_pestis_biovar_Microtus_str._91001 2
Yersinia_pestis_A1122 2
Yersinia_pestis_Z176003 2
Yersinia_pestis_D182038 2
Yersinia_pestis_D106004 2
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 2
Yersinia_pestis_Nepal516 2
Yersinia_pestis_Antiqua 2
Yersinia_pestis_CO92 2
Yersinia_pestis_KIM10+ 2
Serratia_sp._AS13 1
Serratia_plymuthica_4Rx13 1
Serratia_marcescens_FGI94 1
Serratia_marcescens_WW4 1
Serratia_liquefaciens_ATCC_27592 1
Dickeya_dadantii_Ech586 1
Dickeya_dadantii_3937 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1
Pantoea_ananatis_LMG_5342 2
Pantoea_ananatis_PA13 2
Pantoea_ananatis_AJ13355 1
Erwinia_pyrifoliae_DSM_12163 1
Erwinia_amylovora_CFBP1430 1
Cronobacter_sakazakii_CMCC_45402 2
Cronobacter_sakazakii_SP291 2
Cronobacter_sakazakii_ATCC_BAA-894 2
Raoultella_ornithinolytica_B6 2
Shigella_sonnei_53G 1
Shigella_flexneri_2002017 1
Shigella_flexneri_2a_str._2457T 1
Shigella_flexneri_2a_str._301 1
Shigella_dysenteriae_1617 1
Shigella_boydii_Sb227 1
Salmonella_bongori_N268-08 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 1
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1
Klebsiella_oxytoca_KCTC_1686 2
Klebsiella_pneumoniae_JM45 1
Klebsiella_pneumoniae_CG43 1
Klebsiella_pneumoniae_KCTC_2242 1
Klebsiella_pneumoniae_342 2
Klebsiella_pneumoniae_subsp._pneumoniae_1084 1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 1
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 1
Enterobacter_aerogenes_EA1509E 2
Escherichia_coli_E24377A 1
Escherichia_coli_E._coli_PMV-1 1
Escherichia_coli_JJ1886 1
Escherichia_coli_LY180 1
Escherichia_coli_APEC_O78 1
Escherichia_coli_O7:K1_str._CE10 1
Escherichia_coli_O104:H4_str._2009EL-2050 1
Escherichia_coli_O104:H4_str._2009EL-2071 1
Escherichia_coli_O104:H4_str._2011C-3493 1
Escherichia_coli_NA114 1
Escherichia_coli_P12b 1
Escherichia_coli_str._'clone_D_i2' 1
Escherichia_coli_str._'clone_D_i14' 1
Escherichia_coli_UM146 1
Escherichia_coli_042 1
Escherichia_coli_Xuzhou21 1
Escherichia_coli_IHE3034 1
Escherichia_coli_UMNK88 1
Escherichia_coli_O83:H1_str._NRG_857C 1
Escherichia_coli_ABU_83972 1
Escherichia_coli_KO11FL 1
Escherichia_coli_KO11FL 1
Escherichia_coli_LF82 1
Escherichia_coli_ED1a 1
Escherichia_coli_IAI39 1
Escherichia_coli_UMN026 1
Escherichia_coli_55989 1
Escherichia_coli_S88 1
Escherichia_coli_IAI1 1
Escherichia_coli_W 1
Escherichia_coli_W 1
Escherichia_coli_DH1 1
Escherichia_coli_DH1 1
Escherichia_coli_ATCC_8739 1
Escherichia_coli_BL21(DE3) 1
Escherichia_coli_BL21(DE3) 1
Escherichia_coli_SMS-3-5 1
Escherichia_coli_SE15 1
Escherichia_coli_SE11 1
Escherichia_coli_APEC_O1 1
Escherichia_coli_O103:H2_str._12009 1
Escherichia_coli_UTI89 1
Escherichia_coli_536 1
Escherichia_coli_HS 1
Escherichia_coli_ETEC_H10407 1
Escherichia_coli_O55:H7_str._RM12579 1
Escherichia_coli_O55:H7_str._CB9615 1
Escherichia_coli_O26:H11_str._11368 1
Escherichia_coli_CFT073 1
Escherichia_coli_O111:H-_str._11128 1
Escherichia_coli_O127:H6_str._E2348/69 1
Escherichia_coli_O157:H7_str._TW14359 1
Escherichia_coli_O157:H7_str._EC4115 1
Escherichia_coli_O157:H7_str._Sakai 1
Escherichia_coli_O157:H7_str._EDL933 1
Escherichia_coli_str._K-12_substr._MDS42 1
Escherichia_coli_BW2952 1
Escherichia_coli_str._K-12_substr._MG1655 1
Escherichia_coli_str._K-12_substr._W3110 1
Escherichia_coli_str._K-12_substr._DH10B 1
Escherichia_coli_B_str._REL606 1
Enterobacter_cloacae_SCF1 1
Enterobacter_cloacae_EcWSU1 2
Enterobacter_cloacae_subsp._cloacae_ENHKU01 1
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 2
Pseudomonas_denitrificans_ATCC_13867 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1
Pseudomonas_syringae_pv._syringae_B728a 1
Pseudomonas_stutzeri_CCUG_29243 1
Pseudomonas_stutzeri_DSM_10701 1
Pseudomonas_stutzeri_DSM_4166 1
Pseudomonas_stutzeri_RCH2 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1
Pseudomonas_monteilii_SB3101 1
Pseudomonas_monteilii_SB3078 1
Pseudomonas_putida_H8234 1
Pseudomonas_putida_HB3267 1
Pseudomonas_putida_NBRC_14164 1
Pseudomonas_putida_DOT-T1E 1
Pseudomonas_putida_S16 1
Pseudomonas_putida_BIRD-1 1
Pseudomonas_putida_W619 1
Pseudomonas_putida_ND6 1
Pseudomonas_putida_KT2440 1
Pseudomonas_putida_GB-1 1
Pseudomonas_protegens_CHA0 0
Pseudomonas_poae_RE*1-1-14 1
Pseudomonas_fluorescens_F113 2
Pseudomonas_fluorescens_A506 1
Pseudomonas_fluorescens_R124 1
Pseudomonas_fluorescens_Pf0-1 1
Pseudomonas_mendocina_NK-01 1
Pseudomonas_aeruginosa_SCV20265 1
Pseudomonas_aeruginosa_MTB-1 1
Pseudomonas_aeruginosa_LES431 1
Pseudomonas_aeruginosa_B136-33 1
Pseudomonas_aeruginosa_PA1R 1
Pseudomonas_aeruginosa_PA1 1
Pseudomonas_aeruginosa_DK2 1
Pseudomonas_aeruginosa_NCGM2.S1 1
Pseudomonas_aeruginosa_M18 1
Pseudomonas_aeruginosa_LESB58 1
Pseudomonas_aeruginosa_PA7 1
Pseudomonas_aeruginosa_PAO1 1
Sulfolobus_islandicus_LAL14/1 1
Sulfolobus_islandicus_REY15A 1
Sulfolobus_islandicus_HVE10/4 1
Sulfolobus_islandicus_Y.G.57.14 1
Sulfolobus_islandicus_L.S.2.15 1
Sulfolobus_islandicus_M.16.27 1
Sulfolobus_islandicus_M.14.25 1
Sulfolobus_islandicus_M.16.4 1
Sulfolobus_islandicus_L.D.8.5 1
Halovivax_ruber_XH-70 1
Natronococcus_occultus_SP4 2
Halorhabdus_tiamatea_SARL4B 6
Haloarcula_hispanica_N601 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Ciona_intestinalis_69   (Vase tunicate)   1
Arabidopsis_thaliana_10   (Thale cress)   8

Others
Genome     Number
Moniliophthora_perniciosa_FA553__(Genome_survey) 3
Lotus_japonicus__(Early_assembly) 6
Malus_x_domestica_(Duplicate)   (Apple)   18
Ricinus_communis__(Early_assembly)   (Castor bean)   8
Nicotiana_benthamiana_0.4.4_(Early_draft) 15
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   8
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   8
Phoenix_dactylifera__(Early_draft)   (Date palm)   5
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 1
NCBI_plasmid_sequences_(Plasmids) 16
STRING_v9.0.5_(STRING) 782
Uniprot_2018_03_genome 130194
Protozoadb_2010_08_(Protozoadb) 6
NCBI_2017_08_genome 61348
TargetDB__(Targets) 139

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.