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Domain combinations for 51735,48179,52413,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

51735 - NAD(P)-binding Rossmann-fold domains
48179 - 6-phosphogluconate dehydrogenase C-terminal domain-like
52413 - UDP-glucose/GDP-mannose dehydrogenase C-terminal domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   4
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Pongo_abelii_76_2   (Sumatran orangutan)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   1
Macaca_mulatta_76_1   (Rhesus monkey)   1
Otolemur_garnettii_76_3   (Small-eared galago)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Ochotona_princeps_76   (American pika)   1
Sus_scrofa_76_10.2   (Pig)   1
Bos_taurus_76_3.1   (Cattle)   1
Ovis_aries_76_3.1   (Sheep)   1
Vicugna_pacos_76_1   (Alpaca)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Meleagris_gallopavo_76_2   (Turkey)   2
Gallus_gallus_76_4   (Chicken)   1
Anas_platyrhynchos_76_1.0   (Mallard)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2
Xenopus_laevis_   (African clawed frog)   7
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   2
Latimeria_chalumnae_76_1   (Coelacanth)   2
Lepisosteus_oculatus_76   (Spotted gar)   1
Gadus_morhua_76_1   (Atlantic cod)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1
Oryzias_latipes_76_1   (Japanese medaka)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Poecilia_formosa_76   (Amazon molly)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   2
Oikopleura_dioica 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_76   (Vase tunicate)   1
Helobdella_robusta_ 1
Atta_cephalotes_v1.1 1
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   1
Rhodnius_prolixus_22 1
Strigamia_maritima_22 1
Sarcoptes_scabiei 1
Caenorhabditis_japonica_ 1
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 1
Taenia_solium_   (Pork tapeworm)   1
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Daldinia_eschscholzii_EC12_v1.0 0
Apiospora_montagnei_NRRL_25634_v1.0 0
Podospora_anserina_ 0
Thielavia_terrestris_NRRL_8126_ 0
Chaetomium_globosum_CBS_148.51_ 0
Neurospora_tetrasperma_ 0
Neurospora_discreta_FGSC_8579_ 0
Neurospora_crassa_OR74A_ 0
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Verticillium_albo-atrum_VaMs.102_ 0
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 0
Glomerella_graminicola_22 0
Fusarium_graminearum_ 1
Nectria_haematococca_mpVI_ 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1
Fusarium_verticillioides_7600_ 1
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 1
Trichoderma_citrinoviride_v1.0 1
Trichoderma_reesei_1.2 1
Trichoderma_virens_Gv29-8_ 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   0
Botrytis_cinerea_B05.10_ 1
Alternaria_brassicicola_ 1
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 1
Dothistroma_septosporum 3
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 1
Aspergillus_zonatus_v1.0 0
Aspergillus_acidus_v1.0 0
Aspergillus_fumigatus_Af293 0
Aspergillus_brasiliensis_v1.0 0
Aspergillus_glaucus 1
Aspergillus_carbonarius_ITEM_5010_ 0
Neosartorya_fischeri_NRRL_181_ 0
Aspergillus_terreus_NIH2624_ 1
Aspergillus_tubingensis_v1.0 0
Aspergillus_wentii_v1.0 1
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_22 2
Aspergillus_niger_ATCC_1015_ 0
Aspergillus_flavus_NRRL3357_ 1
Penicillium_marneffei_ATCC_18224_ 0
Selaginella_moellendorffii_ 2
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   0
Eucalyptus_grandis_v201   (Rose gum)   3
Theobroma_cacao_B97-61/B2_v1   (Cacao)   3
Gossypium_raimondii_v221 9
Citrus_clementina_v165 4
Citrus_sinensis_v154   (Sweet orange)   3
Thellungiella_halophila_v173 5
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   6
Capsella_rubella_v183 8
Arabidopsis_lyrata_   (Lyrate rockcress)   5
Arabidopsis_thaliana_10   (Thale cress)   5
Carica_papaya_   (Papaya)   2
Medicago_truncatula_   (Barrel medic)   3
Phaseolus_vulgaris_v186   (French bean)   6
Glycine_max_v109   (Soybean)   6
Cucumis_sativus_v122   (Cucumber)   4
Fragaria_vesca_   (Wild strawberry)   3
Malus_domestica_v196   (Apple)   10
Prunus_persica_v139   (Peach)   6
Linum_usitatissimum_v200   (Flax)   4
Manihot_esculenta_v147   (Cassava)   4
Populus_trichocarpa_v156   (Black cottonwood)   4
Mimulus_guttatus_v140   (Spotted monkey flower)   3
Solanum_lycopersicum_v.2.3   (Tomato)   3
Solanum_tuberosum_   (Potato)   5
Actinidia_chinensis_Hongyang_ 4
Aquilegia_coerulea_v195 3
Triticum_urartu_22 1
Triticum_aestivum_22   (Bread wheat)   12
Aegilops_tauschii_22 4
Brachypodium_distachyon_   (Stiff brome)   3
Oryza_barthii_22   (African wild rice)   4
Oryza_meridionalis_22 2
Oryza_glumaepatula_22 3
Oryza_glaberrima   (African rice)   4
Oryza_punctata_22 4
Oryza_nivara_22 5
Oryza_brachyantha_22   (Malo sina)   4
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   8
Oryza_sativa_v193   (Rice)   8
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   5
Panicum_virgatum_v202   (Switchgrass)   6
Setaria_italica_v164   (Foxtail millet)   5
Zea_mays_subsp._mays_   (Maize)   4
Zea_mays_v181   (Maize)   6
Sorghum_bicolor_   (Sorghum)   2
Musa_balbisiana   (Balbis banana)   7
Musa_acuminata_22   (Wild Malaysian banana)   0
Amborella_trichopoda_22 1
Physcomitrella_patens 4
Coccomyxa_subellipsoidea_sp._C-169_v2 2
Chlorella_vulgaris_ 2
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 2
Chlamydomonas_reinhardtii_4.0 1
Trypanosoma_cruzi_strain_CL_Brener 1
Perkinsus_marinus_ATCC_50983_ 0
Cryptosporidium_hominis 1
Cryptosporidium_parvum_Iowa_II 1
Symbiodinium_minutum_clade_B1_v1.2 1
Naegleria_gruberi_ 2
Thermobaculum_terrenum_ATCC_BAA-798 1
Frankia_sp._EAN1pec 2
Frankia_alni_ACN14a 1
Gordonia_polyisoprenivorans_VH2 1
Brachybacterium_faecium_DSM_4810 1
Thermaerobacter_marianensis_DSM_12885 1
Bacillus_sp._JS 1
Bacillus_atrophaeus_1942 1
Bacillus_subtilis_subsp._subtilis_str._168 1
Gemmatimonas_aurantiaca_T-27 1
Parachlamydia_acanthamoebae_UV-7 1
Simkania_negevensis_Z 1
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 1
Desulfarculus_baarsii_DSM_2075 1
Syntrophus_aciditrophicus_SB 1
Desulfomonile_tiedjei_DSM_6799 1
Syntrophobacter_fumaroxidans_MPOB 0
Desulfatibacillum_alkenivorans_AK-01 1
Pelobacter_propionicus_DSM_2379 0
Anaeromyxobacter_sp._Fw109-5 1
Dechloromonas_aromatica_RCB 1
Burkholderia_phytofirmans_PsJN 1
Burkholderia_phymatum_STM815 1
Burkholderia_xenovorans_LB400 1
Burkholderia_sp._CCGE1002 1
Burkholderia_thailandensis_E264 1
Burkholderia_pseudomallei_1106a 1
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_gladioli_BSR3 1
Burkholderia_glumae_BGR1 1
Ramlibacter_tataouinensis_TTB310 1
Advenella_kashmirensis_WT001 1
Caulobacter_sp._K31 1
Azospirillum_brasilense_Sp245 1
Starkeya_novella_DSM_506 1
Methylobacterium_nodulans_ORS_2060 1
Ochrobactrum_anthropi_ATCC_49188 1
Brucella_microti_CCM_4915 1
Brucella_pinnipedialis_B2/94 1
Brucella_canis_ATCC_23365 1
Brucella_suis_ATCC_23445 1
Brucella_melitensis_ATCC_23457 1
Brucella_ovis_ATCC_25840 1
Brucella_abortus_S19 1
Agrobacterium_radiobacter_K84 1
Rhodomicrobium_vannielii_ATCC_17100 1
Methanosarcina_barkeri_str._Fusaro 1
Methanoculleus_bourgensis_MS2 1
Methanoculleus_marisnigri_JR1 1
Halopiger_xanaduensis_SH-6 1
Haloterrigena_turkmenica_DSM_5511 1
Natrialba_magadii_ATCC_43099 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   5
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Aspergillus_fumigatus_A1163_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   3
Hordeum_vulgare_22   (Domesticated barley)   5
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5
Chroococcidiopsis_thermalis_PCC_7203 1
Frankia_sp._EuI1c 1
Frankia_sp._CcI3 1
Streptomyces_davawensis_JCM_4913 1
Actinoplanes_friuliensis_DSM_7358 1
Mycobacterium_tuberculosis_RGTB327 1
Bacillus_subtilis_PY79 1
Bacillus_subtilis_XF-1 1
Bacillus_subtilis_QB928 1
Bacillus_subtilis_BSn5 2
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1
Salinibacter_ruber_DSM_13855 1
Burkholderia_phenoliruptrix_BR3459a 1
Burkholderia_sp._CCGE1003 1
Burkholderia_sp._CCGE1001 1
Burkholderia_thailandensis_MSMB121 1
Burkholderia_pseudomallei_MSHR305 1
Burkholderia_pseudomallei_NCTC_13179 1
Burkholderia_pseudomallei_BPC006 1
Burkholderia_pseudomallei_1026b 1
Burkholderia_pseudomallei_668 1
Burkholderia_pseudomallei_1710b 1
Burkholderia_pseudomallei_K96243 1
Burkholderia_lata 1
Burkholderia_cenocepacia_J2315 1
Burkholderia_multivorans_ATCC_17616 1
Rhodobacter_sphaeroides_ATCC_17025 1
Brucella_ceti_TE10759-12 1
Brucella_ceti_TE28753-12 1
Brucella_canis_HSK_A52141 1
Brucella_suis_VBI22 1
Brucella_suis_1330 1
Brucella_suis_1330 1
Brucella_melitensis_NI 1
Brucella_melitensis_M5-90 1
Brucella_melitensis_M28 1
Brucella_melitensis_bv._1_str._16M 1
Brucella_abortus_A13334 1
Brucella_melitensis_biovar_Abortus_2308 1
Brucella_abortus_bv._1_str._9-941 1
Methanolobus_psychrophilus_R15 1
Natronobacterium_gregoryi_SP2 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   1
Sus_scrofa_69_10.2   (Pig)   1
Bos_taurus_69_3.1   (Cattle)   1
Vicugna_pacos_69_1   (Alpaca)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Canis_familiaris_69_3.1   (Dog)   1
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   1
Pteropus_vampyrus_69_1   (Large flying fox)   1
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Meleagris_gallopavo_69_2   (Turkey)   2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   2
Latimeria_chalumnae_69_1   (Coelacanth)   2
Gadus_morhua_69_1   (Atlantic cod)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Takifugu_rubripes_69_4   (Torafugu)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_69   (Vase tunicate)   1
Arabidopsis_thaliana_10   (Thale cress)   4

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   4
Homo_sapiens__(NCBI_version)   (Human)   3
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Lotus_japonicus__(Early_assembly) 2
Malus_x_domestica_(Duplicate)   (Apple)   10
Ricinus_communis__(Early_assembly)   (Castor bean)   4
Nicotiana_benthamiana_0.4.4_(Early_draft) 6
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3
NCBI_plasmid_sequences_(Plasmids) 4
NCBI_2017_08_genome 3072
TargetDB__(Targets) 3
Protozoadb_2010_08_(Protozoadb) 5
Protein_Data_Bank_(all_PDB_sequenc) 61
STRING_v9.0.5_(STRING) 117
Uniprot_2018_03_genome 14390

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