SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 51905,51905,51905 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

51905 - FAD/NAD(P)-binding domain
51905 - FAD/NAD(P)-binding domain
51905 - FAD/NAD(P)-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Papio_anubis_76   (Olive baboon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Sus_scrofa_76_10.2   (Pig)   0
Bos_taurus_76_3.1   (Cattle)   0
Ovis_aries_76_3.1   (Sheep)   0
Vicugna_pacos_76_1   (Alpaca)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Equus_caballus_76_2   (Horse)   0
Sorex_araneus_76_1   (European shrew)   1
Procavia_capensis_76_1   (Cape rock hyrax)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Saccoglossus_kowalevskii_v3.0 1
Latimeria_chalumnae_76_1   (Coelacanth)   0
Gadus_morhua_76_1   (Atlantic cod)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Takifugu_rubripes_76_4   (Torafugu)   0
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Poecilia_formosa_76   (Amazon molly)   0
Danio_rerio_76_9   (Zebrafish)   0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_76   (Vase tunicate)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Adineta_vaga 4
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   0
Lucilia_cuprina   (Australian sheep blowfly)   0
Strigamia_maritima_22 0
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 2
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   1
Mnemiopsis_leidyi   (Sea walnut)   1
Hydra_vulgaris 1
Amphimedon_queenslandica 0
Mucor_circinelloides_ 1
Sporisorium_reilianum_22 0
Sphaerobolus_stellatus_v1.0 0
Piloderma_croceum_F_1598_v1.0 0
Hydnomerulius_pinastri_v2.0 0
Coprinopsis_cinerea_okayama7_130_v3 1
Pleurotus_ostreatus_   (Oyster mushroom)   3
Amanita_thiersii_Skay4041_v1.0 1
Galerina_marginata_v1.0 1
Laccaria_bicolor_S238N-H82_ 1
Agaricus_bisporus_var._bisporus_ 1
Stereum_hirsutum_FP-91666_SS1__v1.0 1
Gloeophyllum_trabeumv1.0 1
Phanerochaete_chrysosporium_RP-78_2.1 2
Dichomitus_squalens 1
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 2
Magnaporthe_grisea_70-15_ 2
Podospora_anserina_ 0
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 1
Neurospora_tetrasperma_ 2
Cryphonectria_parasitica_   (Chestnut blight fungus)   3
Verticillium_albo-atrum_VaMs.102_ 2
Verticillium_dahliae_VdLs.17_ 2
Acremonium_alcalophilumv_1.0 2
Glomerella_graminicola_22 1
Fusarium_graminearum_ 5
Nectria_haematococca_mpVI_ 8
Fusarium_oxysporum_f._sp._lycopersici_4286_ 8
Fusarium_verticillioides_7600_ 5
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 1
Trichoderma_citrinoviride_v1.0 1
Trichoderma_virens_Gv29-8_ 3
Trichoderma_harzianum_CBS_226.95_v1.0 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   2
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 0
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 0
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Alternaria_brassicicola_ 1
Cochliobolus_lunatus_m118_v2.0 2
Pyrenophora_teres_f._teres_22 1
Pyrenophora_tritici-repentis_ 3
Stagonospora_nodorum_ 2
Mycosphaerella_graminicola_IPO323_ 3
Zasmidium_cellare_ATCC_36951_v1.0 9
Dothistroma_septosporum 3
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 5
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Paracoccidioides_brasiliensis_Pb18_ 0
Coccidioides_posadasii_RMSCC_3488_ 3
Coccidioides_immitis_RS_ 1
Ajellomyces_dermatitidis_SLH14081_ 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Microsporum_canis_CBS_113480_ 2
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_verrucosum_HKI_0517_ 1
Arthroderma_benhamiae_CBS_112371_ 1
Trichophyton_tonsurans_CBS_112818_ 1
Trichophyton_rubrum_CBS_118892_ 1
Uncinocarpus_reesii_1704_ 2
Aspergillus_zonatus_v1.0 4
Penicillium_chrysogenum_Wisconsin_54-1255_ 8
Penicillium_chrysogenum_v1.0 6
Aspergillus_acidus_v1.0 3
Aspergillus_fumigatus_Af293 2
Aspergillus_brasiliensis_v1.0 3
Aspergillus_nidulans_FGSC_A4_ 3
Aspergillus_sydowii_v1.0 13
Aspergillus_versicolor_v1.0 11
Aspergillus_glaucus 6
Aspergillus_carbonarius_ITEM_5010_ 3
Neosartorya_fischeri_NRRL_181_ 1
Aspergillus_terreus_NIH2624_ 4
Aspergillus_tubingensis_v1.0 5
Aspergillus_wentii_v1.0 5
Aspergillus_oryzae_RIB40_ 4
Aspergillus_niger_22 0
Aspergillus_niger_ATCC_1015_ 4
Aspergillus_flavus_NRRL3357_ 6
Aspergillus_clavatus_NRRL_1_ 1
Penicillium_marneffei_ATCC_18224_ 1
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Wickerhamomyces_anomalus 1
Yarrowia_lipolytica_CLIB122 0
Dictyostelium_purpureum_ 1
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   2
Eucalyptus_grandis_v201   (Rose gum)   4
Thellungiella_halophila_v173 0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   1
Manihot_esculenta_v147   (Cassava)   1
Vitis_vinifera_   (Wine grape)   0
Actinidia_chinensis_Hongyang_ 4
Triticum_urartu_22 1
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_punctata_22 0
Oryza_nivara_22 0
Panicum_virgatum_v202   (Switchgrass)   1
Sorghum_bicolor_   (Sorghum)   1
Physcomitrella_patens 1
Ectocarpus_siliculosus 1
Pythium_vexans_DAOM_BR484_22 0
Fragilariopsis_cylindrus 0
Neospora_caninum 0
Emiliania_huxleyi_CCMP1516_ 0
Acaryochloris_marina_MBIC11017 1
Rivularia_sp._PCC_7116 0
Ilumatobacter_coccineus 0
Kitasatospora_setae_KM-6054 1
Streptomyces_coelicolor_A3(2) 2
Streptomyces_sp._PAMC26508 0
Streptomyces_flavogriseus_ATCC_33331 0
Micromonospora_aurantiaca_ATCC_27029 1
Actinoplanes_missouriensis_431 1
Gordonia_polyisoprenivorans_VH2 1
Rhodococcus_jostii_RHA1 1
Rhodococcus_opacus_B4 1
Rhodococcus_erythropolis_PR4 1
Mycobacterium_sp._JLS 1
Mycobacterium_vanbaalenii_PYR-1 1
Mycobacterium_chubuense_NBB4 1
Mycobacterium_marinum_M 0
Mycobacterium_smegmatis_str._MC2_155 2
Haliscomenobacter_hydrossis_DSM_1100 1
Krokinobacter_sp._4H-3-7-5 1
Robiginitalea_biformata_HTCC2501 1
Leptospira_interrogans_serovar_Lai_str._IPAV 1
Ralstonia_eutropha_JMP134 1
Ralstonia_solanacearum_CFBP2957 1
Achromobacter_xylosoxidans 1
Nitrosomonas_sp._Is79A3 1
Caulobacter_sp._K31 1
Caulobacter_crescentus_NA1000 1
Caulobacter_segnis_ATCC_21756 1
Sphingomonas_wittichii_RW1 1
Hyphomonas_neptunium_ATCC_15444 2
Bradyrhizobium_japonicum_USDA_110 0
Bradyrhizobium_sp._ORS_278 0
Alkalilimnicola_ehrlichii_MLHE-1 0
Rahnella_sp._Y9602 0
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 0
Serratia_sp._AS12 0
Serratia_sp._ATCC_39006 0
Serratia_plymuthica_AS9 0
Serratia_proteamaculans_568 0
Dickeya_dadantii_Ech703 0
Dickeya_zeae_Ech1591 0
Pectobacterium_wasabiae_WPP163 0
Pectobacterium_sp._SCC3193 0
Pectobacterium_atrosepticum_SCRI1043 0
Pectobacterium_carotovorum_subsp._carotovorum_PC1 0
Pantoea_vagans_C9-1 0
Pantoea_ananatis_LMG_20103 0
Erwinia_tasmaniensis_Et1/99 0
Cronobacter_turicensis_z3032 1
Cronobacter_sakazakii_ES15 0
Enterobacteriaceae_bacterium_strain_FGI_57 0
Klebsiella_oxytoca_E718 0
Klebsiella_variicola_At-22 0
Klebsiella_pneumoniae_NTUH-K2044 0
Enterobacter_aerogenes_KCTC_2190 0
Enterobacter_sp._638 0
Enterobacter_asburiae_LF7a 0
Enterobacter_cloacae_subsp._dissolvens_SDM 0
Citrobacter_rodentium_ICC168 0
Citrobacter_koseri_ATCC_BAA-895 0
Acinetobacter_baumannii_ATCC_17978 1
Archaeoglobus_fulgidus_DSM_4304 1

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Strains
Genome     Number
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1
Paracoccidioides_brasiliensis_Pb01_ 0
Paracoccidioides_brasiliensis_Pb03_ 0
Coccidioides_posadasii_str._Silveira_ 3
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 2
Coccidioides_immitis_H538.4_ 2
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 0
Aspergillus_fumigatus_A1163_ 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Neospora_caninum_Nc-Liverpool_6.2 0
Actinoplanes_friuliensis_DSM_7358 1
Rhodococcus_erythropolis_CCM2595 2
Mycobacterium_sp._MOTT36Y 1
Mycobacterium_sp._JDM601 1
Mycobacterium_liflandii_128FXT 0
Mycobacterium_sp._KMS 1
Mycobacterium_sp._MCS 1
Mycobacterium_yongonense_05-1390 1
Mycobacterium_smegmatis_str._MC2_155 2
Mycobacterium_kansasii_ATCC_12478 0
Corynebacterium_maris_DSM_45190 1
Emticicia_oligotrophica_DSM_17448 0
Leptospira_interrogans_serovar_Lai_str._56601 1
Ralstonia_solanacearum_Po82 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1
Caulobacter_crescentus_CB15 1
Bradyrhizobium_sp._S23321 0
Bradyrhizobium_sp._BTAi1 0
Bradyrhizobium_oligotrophicum_S58 0
Bradyrhizobium_japonicum_USDA_6 0
Serratia_sp._AS13 0
Serratia_plymuthica_4Rx13 0
Serratia_marcescens_FGI94 0
Dickeya_dadantii_Ech586 0
Dickeya_dadantii_3937 0
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 0
Pantoea_ananatis_LMG_5342 0
Pantoea_ananatis_PA13 0
Pantoea_ananatis_AJ13355 0
Cronobacter_sakazakii_CMCC_45402 0
Cronobacter_sakazakii_ATCC_BAA-894 0
Raoultella_ornithinolytica_B6 0
Klebsiella_oxytoca_KCTC_1686 0
Klebsiella_pneumoniae_KCTC_2242 0
Klebsiella_pneumoniae_subsp._pneumoniae_1084 0
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 0
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 0
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 0
Enterobacter_aerogenes_EA1509E 0
Enterobacter_cloacae_EcWSU1 0
Enterobacter_cloacae_subsp._cloacae_ENHKU01 0
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 0
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 0

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Longest transcript per gene
Genome     Number
Macaca_mulatta_69_1   (Rhesus monkey)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Sus_scrofa_69_10.2   (Pig)   0
Bos_taurus_69_3.1   (Cattle)   0
Vicugna_pacos_69_1   (Alpaca)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   0
Sorex_araneus_69_1   (European shrew)   1
Procavia_capensis_69_1   (Cape rock hyrax)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Latimeria_chalumnae_69_1   (Coelacanth)   0
Gadus_morhua_69_1   (Atlantic cod)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Takifugu_rubripes_69_4   (Torafugu)   0
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0
Danio_rerio_69_9   (Zebrafish)   0
Ciona_intestinalis_69   (Vase tunicate)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1

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Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 2
NCBI_plasmid_sequences_(Plasmids) 3
Protein_Data_Bank_(all_PDB_sequenc) 3
STRING_v9.0.5_(STRING) 73
Uniprot_2018_03_genome 6930
NCBI_2017_08_genome 1907
PDB_chains_(SCOP_1.75)_(PDB) 0
TargetDB__(Targets) 6

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