SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 51905,52833 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

51905 - FAD/NAD(P)-binding domain
52833 - Thioredoxin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Coniophora_puteana 0
Pisolithus_tinctorius_Marx_270_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 1
Punctularia_strigosozonata_v1.0 1
Postia_placenta_ 1
Wolfiporia_cocos_MD-104_SS10__v1.0 1
Fomitopsis_pinicolav1.0 1
Aspergillus_nidulans_FGSC_A4_ 1
Aspergillus_glaucus 1
Aspergillus_carbonarius_ITEM_5010_ 1
Aspergillus_flavus_NRRL3357_ 1
Aspergillus_clavatus_NRRL_1_ 1
Selaginella_moellendorffii_ 0
Eucalyptus_grandis_v201   (Rose gum)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 1
Citrus_clementina_v165 0
Citrus_sinensis_v154   (Sweet orange)   0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Carica_papaya_   (Papaya)   0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   0
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   1
Prunus_persica_v139   (Peach)   0
Linum_usitatissimum_v200   (Flax)   1
Manihot_esculenta_v147   (Cassava)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Vitis_vinifera_   (Wine grape)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Solanum_lycopersicum_v.2.3   (Tomato)   0
Solanum_tuberosum_   (Potato)   1
Actinidia_chinensis_Hongyang_ 2
Aquilegia_coerulea_v195 0
Triticum_aestivum_22   (Bread wheat)   3
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_barthii_22   (African wild rice)   1
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 0
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Panicum_virgatum_v202   (Switchgrass)   0
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   1
Musa_acuminata_22   (Wild Malaysian banana)   1
Amborella_trichopoda_22 0
Physcomitrella_patens 0
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Chlorella_variabilis_sp._NC64A_ 0
Chlorella_vulgaris_ 1
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Chlamydomonas_reinhardtii_4.0 0
Ostreococcus_sp._RCC809_ 0
Ostreococcus_lucimarinus_CCE9901_ 0
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 0
Micromonas_pusilla_CCMP1545_v3.0 0
Bigelowiella_natans_CCMP2755_22 0
Cyanophora_paradoxa_ 0
Ectocarpus_siliculosus 1
Acaryochloris_marina_MBIC11017 1
Thermosynechococcus_sp._NK55 1
Thermosynechococcus_elongatus_BP-1 1
Synechococcus_sp._PCC_6312 1
Synechococcus_sp._CC9311 1
Synechococcus_elongatus_PCC_7942 1
Prochlorococcus_marinus_str._MIT_9515 1
Microcoleus_sp._PCC_7113 1
Geitlerinema_sp._PCC_7407 1
Cyanothece_sp._PCC_8802 0
Gloeocapsa_sp._PCC_7428 1
Halothece_sp._PCC_7418 1
Microcystis_aeruginosa_NIES-843 1
Rivularia_sp._PCC_7116 0
Calothrix_sp._PCC_7507 1
Anabaena_variabilis_ATCC_29413 1
'Nostoc_azollae'_0708 1
Nostoc_sp._PCC_7107 1
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 1
Slackia_heliotrinireducens_DSM_20476 0
Atopobium_parvulum_DSM_20469 0
Streptomyces_avermitilis_MA-4680 1
Streptomyces_scabiei_87.22 1
Actinosynnema_mirum_DSM_43827 1
Nocardia_cyriacigeorgica_GUH-2 1
Mycobacterium_leprae_Br4923 1
Renibacterium_salmoninarum_ATCC_33209 1
Bifidobacterium_animalis_subsp._lactis_Bl-04 0
Acidaminococcus_intestini_RyC-MR95 0
Selenomonas_sputigena_ATCC_35185 0
Natranaerobius_thermophilus_JW/NM-WN-LF 1
Symbiobacterium_thermophilum_IAM_14863 1
Desulfosporosinus_acidiphilus_SJ4 0
Desulfosporosinus_orientis_DSM_765 1
Syntrophobotulus_glycolicus_DSM_8271 0
Desulfitobacterium_hafniense_Y51 1
Desulfitobacterium_dehalogenans_ATCC_51507 0
Desulfotomaculum_reducens_MI-1 1
Desulfotomaculum_ruminis_DSM_2154 1
Eubacterium_limosum_KIST612 0
Clostridium_sticklandii_DSM_519 0
Clostridium_saccharolyticum_WM1 0
Clostridium_lentocellum_DSM_5427 0
Clostridium_beijerinckii_NCIMB_8052 0
Clostridium_perfringens_ATCC_13124 0
Tepidanaerobacter_acetatoxydans_Re1 0
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 1
Thermoanaerobacter_pseudethanolicus_ATCC_33223 0
Thermoanaerobacter_sp._X514 0
Thermoanaerobacter_italicus_Ab9 0
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 0
Acetohalobium_arabaticum_DSM_5501 3
Halanaerobium_praevalens_DSM_2228 0
Melissococcus_plutonius_DAT561 0
Enterococcus_faecalis_62 0
Leuconostoc_citreum_KM20 0
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 0
Leuconostoc_gasicomitatum_LMG_18811 0
Lactobacillus_fermentum_IFO_3956 0
Lactobacillus_reuteri_DSM_20016 0
Fretibacterium_fastidiosum 0
Anaerobaculum_mobile_DSM_13181 1
Spirochaeta_smaragdinae_DSM_11293 0
Spirochaeta_caldaria_DSM_7334 0
Streptobacillus_moniliformis_DSM_12112 1
Ilyobacter_polytropus_DSM_2926 0
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 0
Desulfomonile_tiedjei_DSM_6799 0
Babela_massiliensis 2
Granulibacter_bethesdensis_CGDNIH1 1
Photobacterium_profundum_SS9 1
Escherichia_fergusonii_ATCC_35469 1

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Chroococcidiopsis_thermalis_PCC_7203 1
Dactylococcopsis_salina_PCC_8305 1
Synechococcus_sp._JA-2-3B'a(2-13) 1
Synechococcus_sp._JA-3-3Ab 1
Synechococcus_sp._CC9902 1
Synechococcus_sp._RCC307 1
Synechococcus_sp._CC9605 1
Synechococcus_sp._WH_8102 1
Synechococcus_sp._WH_7803 1
Synechococcus_elongatus_PCC_6301 1
Prochlorococcus_marinus_str._NATL1A 1
Prochlorococcus_marinus_str._MIT_9301 1
Prochlorococcus_marinus_str._AS9601 1
Prochlorococcus_marinus_subsp._marinus_str._CCMP1375 1
Prochlorococcus_marinus_subsp._pastoris_str._CCMP1986 0
Prochlorococcus_marinus_str._MIT_9215 1
Prochlorococcus_marinus_str._MIT_9211 1
Prochlorococcus_marinus_str._MIT_9312 1
Prochlorococcus_marinus_str._NATL2A 1
Oscillatoria_nigro-viridis_PCC_7112 0
Oscillatoria_acuminata_PCC_6304 1
Arthrospira_platensis_NIES-39 1
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7425 1
Cyanothece_sp._PCC_7424 1
Cyanothece_sp._PCC_8801 0
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Stanieria_cyanosphaera_PCC_7437 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Cylindrospermum_stagnale_PCC_7417 1
Anabaena_cylindrica_PCC_7122 1
Streptomyces_albus_J1074 1
Actinoplanes_friuliensis_DSM_7358 1
Nocardia_brasiliensis_ATCC_700358 1
Mycobacterium_leprae_TN 1
Bifidobacterium_thermophilum_RBL67 0
Bifidobacterium_animalis_subsp._animalis_ATCC_25527 0
Bifidobacterium_animalis_subsp._lactis_Bl12 0
Bifidobacterium_animalis_subsp._lactis_B420 0
Bifidobacterium_animalis_subsp._lactis_ATCC_27673 0
Bifidobacterium_animalis_subsp._lactis_BLC1 0
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 0
Bifidobacterium_animalis_subsp._lactis_Bi-07 0
Bifidobacterium_animalis_subsp._lactis_V9 0
Bifidobacterium_animalis_subsp._lactis_DSM_10140 0
Bifidobacterium_animalis_subsp._lactis_BB-12 0
Bifidobacterium_animalis_subsp._lactis_AD011 0
Bifidobacterium_asteroides_PRL2011 0
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 0
Faecalibacterium_prausnitzii_L2-6 0
Desulfosporosinus_meridiei_DSM_13257 2
Desulfitobacterium_dichloroeliminans_LMG_P-21439 1
Desulfitobacterium_hafniense_DCB-2 0
Clostridium_perfringens_str._13 0
Thermoanaerobacter_sp._X513 0
Halobacteroides_halobius_DSM_5150 1
Melissococcus_plutonius_ATCC_35311 0
Enterococcus_faecalis_str._Symbioflor_1 0
Enterococcus_faecalis_D32 0
Enterococcus_faecalis_OG1RF 0
Enterococcus_faecalis_V583 0
Leuconostoc_carnosum_JB16 0
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 0
Leuconostoc_gelidum_JB7 0
Lactobacillus_fermentum_F-6 0
Lactobacillus_fermentum_CECT_5716 0
Lactobacillus_reuteri_TD1 0
Lactobacillus_reuteri_I5007 0
Lactobacillus_reuteri_JCM_1112 0
Lactobacillus_reuteri_SD2112 0
Fusobacterium_nucleatum_subsp._vincentii_3_1_36A2 0
Fusobacterium_nucleatum_subsp._animalis_4_8 0

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Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Moniliophthora_perniciosa_FA553__(Genome_survey) 3
Malus_x_domestica_(Duplicate)   (Apple)   1
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
NCBI_plasmid_sequences_(Plasmids) 0
Uniprot_2018_03_genome 1677
NCBI_2017_08_genome 631
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 44

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