SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for 51905,54373,51905 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

51905 - FAD/NAD(P)-binding domain
54373 - FAD-linked reductases, C-terminal domain
51905 - FAD/NAD(P)-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Macaca_mulatta_76_1   (Rhesus monkey)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Equus_caballus_76_2   (Horse)   1
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Saccoglossus_kowalevskii_v3.0 2
Gadus_morhua_76_1   (Atlantic cod)   1
Oryzias_latipes_76_1   (Japanese medaka)   1
Danio_rerio_76_9   (Zebrafish)   1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1
Adineta_vaga 4
Helobdella_robusta_ 2
Capitella_sp._I_ 1
Heliconius_melpomene_   (Postman butterfly)   0
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   2
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   0
Acyrthosiphon_pisum_   (Pea aphid)   2
Rhodnius_prolixus_22 0
Tetranychus_urticae_   (Two-spotted spider mite)   1
Meloidogyne_hapla_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   1
Schistosoma_mansoni_ 1
Thelohanellus_kitauei 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   2
Hydra_vulgaris 2
Trichoplax_adhaerens_ 1
Mortierella_verticillata_NRRL_6337_ 1
Phycomyces_blakesleeanus_ 2
Rhizopus_oryzae_RA_99-880_ 2
Mucor_circinelloides_ 2
Rhizomucor_miehei_CAU432_ 2
Sporisorium_reilianum_22 1
Ustilago_maydis_ 1
Mixia_osmundae_IAM_14324_v1.0 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Melampsora_laricis-populina_ 1
Rhodotorula_graminis_WP1_v1.0 1
Sporobolomyces_roseus_IAM_13481_ 1
Sphaerobolus_stellatus_v1.0 1
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Coniophora_puteana 1
Pisolithus_microcarpus_441_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 1
Coprinopsis_cinerea_okayama7_130_v3 1
Pleurotus_ostreatus_   (Oyster mushroom)   1
Galerina_marginata_v1.0 1
Laccaria_bicolor_S238N-H82_ 1
Schizophyllum_commune_ 1
Gloeophyllum_trabeumv1.0 1
Fomitiporia_mediterranea_v1.0 1
Tulasnella_calospora_AL13/4D_v1.0 1
Phanerochaete_chrysosporium_RP-78_2.1 1
Tremella_mesenterica_   (Witches' butter)   1
Trichoderma_citrinoviride_v1.0 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Hansenula_polymorpha_v2.0 1
Dekkera_bruxellensis_CBS_2499_v2.0 1
Pichia_membranifaciensv1.0 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1
Candida_dubliniensis_CD36_ 1
Candida_tropicalis_MYA-3404_ 1
Candida_parapsilosis_ 1
Candida_albicans_SC5314 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1
Pichia_stipitis_CBS_6054_ 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1
Debaromyces_hansenii 1
Wickerhamomyces_anomalus 1
Pichia_pastoris_GS115_ 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1
Vanderwaltozyma_polyspora_DSM_70294_ 2
Candida_glabrata_CBS138 1
Kluyveromyces_thermotolerans_CBS_6340 1
Lachancea_kluyveri_ 1
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 1
Zygosaccharomyces_rouxii_ 1
Saccharomyces_mikatae_MIT 1
Saccharomyces_paradoxus_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Saccharomyces_bayanus_MIT 1
Kluyveromyces_lactis 1
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_octosporus_yFS286_ 1
Schizosaccharomyces_japonicus_yFS275_ 1
Schizosaccharomyces_pombe   (Fission yeast)   1
Catenaria_anguillulae_PL171_v1.0 1
Allomyces_macrogynus_ATCC_38327_ 3
Spizellomyces_punctatus_DAOM_BR117_ 1
Entamoeba_dispar_1.2 2
Entamoeba_invadens_1.2 1
Entamoeba_histolytica_1 2
Pinus_taeda   (Loblolly pine)   0
Eucalyptus_grandis_v201   (Rose gum)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2
Gossypium_raimondii_v221 8
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Arabidopsis_thaliana_10   (Thale cress)   1
Carica_papaya_   (Papaya)   2
Medicago_truncatula_   (Barrel medic)   1
Phaseolus_vulgaris_v186   (French bean)   1
Glycine_max_v109   (Soybean)   2
Cucumis_sativus_v122   (Cucumber)   1
Malus_domestica_v196   (Apple)   1
Linum_usitatissimum_v200   (Flax)   3
Manihot_esculenta_v147   (Cassava)   3
Populus_trichocarpa_v156   (Black cottonwood)   5
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   4
Solanum_lycopersicum_v.2.3   (Tomato)   3
Actinidia_chinensis_Hongyang_ 1
Aquilegia_coerulea_v195 5
Triticum_urartu_22 1
Triticum_aestivum_22   (Bread wheat)   5
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   3
Oryza_barthii_22   (African wild rice)   2
Oryza_meridionalis_22 3
Oryza_glumaepatula_22 3
Oryza_glaberrima   (African rice)   1
Oryza_punctata_22 1
Oryza_nivara_22 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2
Oryza_sativa_v193   (Rice)   2
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   3
Panicum_virgatum_v202   (Switchgrass)   2
Setaria_italica_v164   (Foxtail millet)   2
Zea_mays_subsp._mays_   (Maize)   2
Zea_mays_v181   (Maize)   2
Sorghum_bicolor_   (Sorghum)   2
Musa_balbisiana   (Balbis banana)   2
Musa_acuminata_22   (Wild Malaysian banana)   2
Amborella_trichopoda_22 1
Physcomitrella_patens 4
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 1
Ostreococcus_tauri_ 1
Micromonas_sp._RCC299_ 1
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Giardia_lamblia_2.3 1
Cyanophora_paradoxa_ 1
Trypanosoma_vivax_ 1
Trypanosoma_congolense_2.4 1
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 1
Aureococcus_anophagefferens_ 0
Albugo_laibachii_22 1
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_ultimum_v1.7-2 1
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_vexans_DAOM_BR484_22 0
Fragilariopsis_cylindrus 2
Thalassiosira_pseudonana_CCMP1335 1
Perkinsus_marinus_ATCC_50983_ 1
Tetrahymena_thermophila_SB210_1_ 1
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 1
Plasmodium_vivax_SaI-1_7.0 1
Plasmodium_knowlesi_strain_H_ 1
Plasmodium_chabaudi_ 1
Plasmodium_berghei_ANKA_ 1
Naegleria_gruberi_ 2
Trichomonas_vaginalis_ 1
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1
Cryptococcus_neoformans_var._grubii_H99_ 1
Cryptococcus_neoformans_B-3501A_ 1
Cryptococcus_neoformans_JEC21_ 1
Candida_albicans_WO-1_ 1
Saccharomyces_cerevisiae_UC5 1
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 1
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_FostersB 1
Saccharomyces_cerevisiae_VL3 1
Saccharomyces_cerevisiae_Vin13 1
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_AWRI796 1
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_CLIB215 1
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 1
Saccharomyces_cerevisiae_RM11-1a 1
Saccharomyces_cerevisiae_RM11-1a_ 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Schizosaccharomyces_pombe_972h-_ 1
Batrachochytrium_dendrobatidis_JAM81_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2
Trypanosoma_brucei_Lister_427_v4.1 1
Plasmodium_falciparum_HB3_ 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Rattus_norvegicus_69_3.4   (Norway rat)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   1
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Gadus_morhua_69_1   (Atlantic cod)   1
Danio_rerio_69_9   (Zebrafish)   1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   1
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1
Arabidopsis_thaliana_10   (Thale cress)   1

Others
Genome     Number
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Malus_x_domestica_(Duplicate)   (Apple)   1
Ricinus_communis__(Early_assembly)   (Castor bean)   2
Nicotiana_benthamiana_0.4.4_(Early_draft) 3
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   3
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
Uniprot_2018_03_genome 3640
Core_Eukaryotic_Genes_458_(CEGMA) 4
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1
PDB_chains_(SCOP_1.75)_(PDB) 2
TargetDB__(Targets) 3
Protein_Data_Bank_(all_PDB_sequenc) 8
Protozoadb_2010_08_(Protozoadb) 20
STRING_v9.0.5_(STRING) 73
NCBI_2017_08_genome 393

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]