SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for 52047,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52047 - RNI-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   15
Pan_troglodytes_76_2.1.4   (Chimpanzee)   9
Gorilla_gorilla_76_3.1   (Western gorilla)   10
Pongo_abelii_76_2   (Sumatran orangutan)   9
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   10
Papio_anubis_76   (Olive baboon)   8
Macaca_mulatta_76_1   (Rhesus monkey)   12
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   14
Otolemur_garnettii_76_3   (Small-eared galago)   7
Microcebus_murinus_76_1   (Gray mouse lemur)   9
Rattus_norvegicus_76_5.0   (Norway rat)   9
Mus_musculus_76_38   (House mouse)   11
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   8
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   10
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   8
Cavia_porcellus_76_3   (Domestic guinea pig)   7
Oryctolagus_cuniculus_76_2   (Rabbit)   7
Ochotona_princeps_76   (American pika)   8
Tupaia_belangeri_76   (Northern tree shrew)   6
Sus_scrofa_76_10.2   (Pig)   7
Bos_taurus_76_3.1   (Cattle)   8
Ovis_aries_76_3.1   (Sheep)   8
Vicugna_pacos_76_1   (Alpaca)   3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   9
Mustela_putorius_furo_76_1.0   (Domestic ferret)   7
Ailuropoda_melanoleuca_76_1   (Giant panda)   6
Canis_familiaris_76_3.1   (Dog)   12
Felis_catus_76_6.2   (Domestic cat)   6
Equus_caballus_76_2   (Horse)   8
Myotis_lucifugus_76_2.0   (Little brown bat)   5
Pteropus_vampyrus_76_1   (Large flying fox)   6
Sorex_araneus_76_1   (European shrew)   6
Erinaceus_europaeus_76   (Western European hedgehog)   6
Procavia_capensis_76_1   (Cape rock hyrax)   4
Loxodonta_africana_76_3   (African savanna elephant)   6
Echinops_telfairi_76   (Small Madagascar hedgehog)   7
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   6
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   5
Macropus_eugenii_76_1.0   (Tammar wallaby)   5
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   14
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   6
Ornithorhynchus_anatinus_76_5   (Platypus)   6
Saccoglossus_kowalevskii_v3.0 24
Petromyzon_marinus_76_7.0   (Sea lamprey)   4
Meleagris_gallopavo_76_2   (Turkey)   3
Gallus_gallus_76_4   (Chicken)   10
Anas_platyrhynchos_76_1.0   (Mallard)   8
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   7
Ficedula_albicollis_76_1.0   (Collared flycatcher)   9
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   8
Anolis_carolinensis_76_2.0   (Green anole)   9
Xenopus_laevis_   (African clawed frog)   7
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   8
Latimeria_chalumnae_76_1   (Coelacanth)   9
Lepisosteus_oculatus_76   (Spotted gar)   6
Gadus_morhua_76_1   (Atlantic cod)   4
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   9
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   4
Oryzias_latipes_76_1   (Japanese medaka)   2
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   7
Poecilia_formosa_76   (Amazon molly)   4
Oreochromis_niloticus_76_1.0   (Nile tilapia)   7
Astyanax_mexicanus_76   (Mexican tetra)   7
Danio_rerio_76_9   (Zebrafish)   7
Oikopleura_dioica 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_76   (Vase tunicate)   9
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   25
Adineta_vaga 66
Octopus_bimaculoides_280 10
Crassostrea_gigas_22   (Pacific oyster)   10
Lottia_gigantea_   (Owl limpet)   5
Helobdella_robusta_ 3
Capitella_sp._I_ 11
Danaus_plexippus_OGS1.0   (Monarch butterfly)   6
Heliconius_melpomene_   (Postman butterfly)   4
Bombyx_mori_   (Domestic silkworm)   5
Nasonia_vitripennis_   (Jewel wasp)   2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   4
Linepithema_humile_v1.1   (Argentine ant)   3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3
Atta_cephalotes_v1.1 5
Camponotus_floridanus_v3.3   (Florida carpenter ant)   4
Lucilia_cuprina   (Australian sheep blowfly)   2
Drosophila_grimshawi_1.3 2
Drosophila_willistoni_1.3 2
Drosophila_pseudoobscura_2.13 6
Drosophila_persimilis_1.3 5
Drosophila_suzukii 4
Drosophila_yakuba_1.3 4
Drosophila_simulans_1.3 3
Drosophila_sechellia_1.3 3
Drosophila_melanogaster_76_5   (Fruit fly)   5
Drosophila_erecta_1.3 4
Drosophila_ananassae_1.3 2
Drosophila_virilis_1.2 2
Drosophila_mojavensis_1.3 1
Megaselia_scalaris_22 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   6
Anopheles_darlingi_22   (American malaria mosquito)   4
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   7
Acyrthosiphon_pisum_   (Pea aphid)   2
Rhodnius_prolixus_22 5
Daphnia_pulex_   (Common water flea)   16
Strigamia_maritima_22 4
Sarcoptes_scabiei 4
Tetranychus_urticae_   (Two-spotted spider mite)   15
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   8
Pristionchus_pacificus_ 3
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Meloidogyne_hapla_ 4
Onchocerca_volvulus_22 5
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   7
Caenorhabditis_japonica_ 5
Caenorhabditis_brenneri_ 38
Caenorhabditis_remanei_ 27
Caenorhabditis_elegans_76_235   (Roundworm)   11
Caenorhabditis_briggsae_2 11
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 9
Echinococcus_multilocularis_ 5
Echinococcus_granulosus_ 5
Taenia_solium_   (Pork tapeworm)   6
Schistosoma_mansoni_ 3
Mnemiopsis_leidyi   (Sea walnut)   5
Thelohanellus_kitauei 2
Acropora_digitifera_v1.0 7
Nematostella_vectensis_1.0   (Starlet sea anemone)   6
Hydra_vulgaris 6
Amphimedon_queenslandica 8
Trichoplax_adhaerens_ 5
Proterospongia_sp._ATCC_50818_ 4
Monosiga_brevicollis_ 4
Sphaeroforma_arctica_JP610_ 2
Capsaspora_owczarzaki_ATCC_30864_ 71
Conidiobolus_coronatus_NRRL28638_v1.0 14
Mortierella_verticillata_NRRL_6337_ 62
Phycomyces_blakesleeanus_ 15
Rhizopus_oryzae_RA_99-880_ 8
Mucor_circinelloides_ 9
Rhizomucor_miehei_CAU432_ 3
Malassezia_globosa_CBS_7966_ 4
Sporisorium_reilianum_22 1
Ustilago_maydis_ 2
Mixia_osmundae_IAM_14324_v1.0 6
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 4
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 9
Melampsora_laricis-populina_ 24
Rhodotorula_graminis_WP1_v1.0 18
Sporobolomyces_roseus_IAM_13481_ 15
Microbotryum_violaceum_22 3
Wallemia_sebi_v1.0 1
Sphaerobolus_stellatus_v1.0 43
Piloderma_croceum_F_1598_v1.0 33
Serpula_lacrymans_var._lacrymans_S7.9_ 5
Coniophora_puteana 67
Hydnomerulius_pinastri_v2.0 27
Paxillus_rubicundulus_Ve08.2h10_v1.0 14
Pisolithus_microcarpus_441_v1.0 8
Pisolithus_tinctorius_Marx_270_v1.0 15
Scleroderma_citrinum_Foug_A_v1.0 10
Coprinopsis_cinerea_okayama7_130_v3 33
Pleurotus_ostreatus_   (Oyster mushroom)   28
Amanita_thiersii_Skay4041_v1.0 13
Amanita_muscaria_Koide_v1.0   (Fly agaric)   22
Galerina_marginata_v1.0 66
Hebeloma_cylindrosporum_h7_v2.0 40
Laccaria_bicolor_S238N-H82_ 32
Agaricus_bisporus_var._bisporus_ 20
Schizophyllum_commune_ 44
Stereum_hirsutum_FP-91666_SS1__v1.0 53
Heterobasidion_annosum_ 13
Gloeophyllum_trabeumv1.0 34
Punctularia_strigosozonata_v1.0 33
Sebacina_vermifera_MAFF_305830_v1.0 28
Fomitiporia_mediterranea_v1.0 16
Tulasnella_calospora_AL13/4D_v1.0 65
Postia_placenta_ 65
Wolfiporia_cocos_MD-104_SS10__v1.0 18
Fomitopsis_pinicolav1.0 37
Fomitopsis_pinicola_FP-58527_SS1_v3.0 39
Phanerochaete_chrysosporium_RP-78_2.1 25
Dichomitus_squalens 32
Trametes_versicolor_v1.0 69
Tremella_mesenterica_   (Witches' butter)   2
Daldinia_eschscholzii_EC12_v1.0 5
Apiospora_montagnei_NRRL_25634_v1.0 3
Magnaporthe_poae_ATCC_64411_22 2
Magnaporthe_grisea_70-15_ 2
Podospora_anserina_ 2
Sporotrichum_thermophile_ATCC_42464_ 2
Thielavia_terrestris_NRRL_8126_ 4
Chaetomium_globosum_CBS_148.51_ 3
Neurospora_tetrasperma_ 2
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   2
Verticillium_albo-atrum_VaMs.102_ 2
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 3
Glomerella_graminicola_22 1
Fusarium_graminearum_ 3
Nectria_haematococca_mpVI_ 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 7
Fusarium_verticillioides_7600_ 7
Trichoderma_asperellum_CBS_433.97_v1.0 2
Trichoderma_atroviride_ 4
Trichoderma_citrinoviride_v1.0 2
Trichoderma_reesei_1.2 4
Trichoderma_virens_Gv29-8_ 4
Trichoderma_longibrachiatum_ATCC_18648_v1.0 4
Trichoderma_harzianum_CBS_226.95_v1.0 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   2
Botrytis_cinerea_B05.10_ 4
Sclerotinia_sclerotiorum_ 2
Blumeria_graminis_22 1
Didymella_exigua_CBS_183.55_v1.0 7
Leptosphaeria_maculans_22 1
Setosphaeria_turcica_v1.0 5
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 7
Cochliobolus_carbonum_26-R-13_v1.0 6
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3
Alternaria_brassicicola_ 2
Cochliobolus_lunatus_m118_v2.0 3
Pyrenophora_teres_f._teres_22 7
Pyrenophora_tritici-repentis_ 4
Stagonospora_nodorum_ 6
Mycosphaerella_graminicola_IPO323_ 5
Zasmidium_cellare_ATCC_36951_v1.0 5
Dothistroma_septosporum 3
Septoria_musiva_v1.0 4
Mycosphaerella_fijiensis_CIRAD86_ 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 8
Paracoccidioides_brasiliensis_Pb18_ 1
Coccidioides_posadasii_RMSCC_3488_ 3
Coccidioides_immitis_RS_ 4
Ajellomyces_dermatitidis_SLH14081_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2
Microsporum_canis_CBS_113480_ 4
Trichophyton_equinum_CBS_127.97_ 5
Trichophyton_verrucosum_HKI_0517_ 4
Arthroderma_benhamiae_CBS_112371_ 3
Trichophyton_tonsurans_CBS_112818_ 4
Trichophyton_rubrum_CBS_118892_ 3
Uncinocarpus_reesii_1704_ 2
Aspergillus_zonatus_v1.0 3
Penicillium_chrysogenum_Wisconsin_54-1255_ 4
Penicillium_chrysogenum_v1.0 5
Aspergillus_acidus_v1.0 6
Aspergillus_fumigatus_Af293 2
Aspergillus_brasiliensis_v1.0 5
Aspergillus_nidulans_FGSC_A4_ 3
Aspergillus_sydowii_v1.0 9
Aspergillus_versicolor_v1.0 9
Aspergillus_glaucus 2
Aspergillus_carbonarius_ITEM_5010_ 2
Neosartorya_fischeri_NRRL_181_ 4
Aspergillus_terreus_NIH2624_ 5
Aspergillus_tubingensis_v1.0 4
Aspergillus_wentii_v1.0 4
Aspergillus_oryzae_RIB40_ 4
Aspergillus_niger_22 3
Aspergillus_niger_ATCC_1015_ 3
Aspergillus_flavus_NRRL3357_ 2
Aspergillus_clavatus_NRRL_1_ 3
Penicillium_marneffei_ATCC_18224_ 3
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Hansenula_polymorpha_v2.0 1
Dekkera_bruxellensis_CBS_2499_v2.0 0
Pichia_membranifaciensv1.0 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Candida_dubliniensis_CD36_ 1
Candida_tropicalis_MYA-3404_ 1
Candida_parapsilosis_ 0
Candida_albicans_SC5314 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 2
Pichia_stipitis_CBS_6054_ 2
Candida_guilliermondii_ATCC_6260_ 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1
Debaromyces_hansenii 1
Wickerhamomyces_anomalus 1
Pichia_pastoris_GS115_ 1
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 0
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1
Vanderwaltozyma_polyspora_DSM_70294_ 0
Candida_glabrata_CBS138 0
Kluyveromyces_thermotolerans_CBS_6340 0
Lachancea_kluyveri_ 0
Kluyveromyces_waltii 0
Ashbya_gossypii_ATCC_10895_ 0
Zygosaccharomyces_rouxii_ 0
Saccharomyces_mikatae_MIT 0
Saccharomyces_paradoxus_MIT 0
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Saccharomyces_bayanus_MIT 0
Kluyveromyces_lactis 0
Schizosaccharomyces_octosporus_yFS286_ 2
Catenaria_anguillulae_PL171_v1.0 7
Allomyces_macrogynus_ATCC_38327_ 14
Spizellomyces_punctatus_DAOM_BR117_ 6
Dictyostelium_discoideum 5
Dictyostelium_purpureum_ 7
Entamoeba_dispar_1.2 1
Entamoeba_invadens_1.2 2
Entamoeba_histolytica_1 3
Selaginella_moellendorffii_ 10
Pinus_taeda   (Loblolly pine)   7
Picea_abies   (Norway spruce)   7
Eucalyptus_grandis_v201   (Rose gum)   18
Theobroma_cacao_B97-61/B2_v1   (Cacao)   8
Gossypium_raimondii_v221 8
Citrus_clementina_v165 8
Citrus_sinensis_v154   (Sweet orange)   17
Thellungiella_halophila_v173 10
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   6
Capsella_rubella_v183 12
Arabidopsis_lyrata_   (Lyrate rockcress)   7
Arabidopsis_thaliana_10   (Thale cress)   4
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   21
Phaseolus_vulgaris_v186   (French bean)   5
Glycine_max_v109   (Soybean)   3
Cucumis_sativus_v122   (Cucumber)   2
Fragaria_vesca_   (Wild strawberry)   22
Malus_domestica_v196   (Apple)   21
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   9
Manihot_esculenta_v147   (Cassava)   5
Populus_trichocarpa_v156   (Black cottonwood)   11
Vitis_vinifera_   (Wine grape)   8
Mimulus_guttatus_v140   (Spotted monkey flower)   9
Solanum_lycopersicum_v.2.3   (Tomato)   7
Solanum_tuberosum_   (Potato)   20
Actinidia_chinensis_Hongyang_ 7
Aquilegia_coerulea_v195 9
Triticum_urartu_22 43
Triticum_aestivum_22   (Bread wheat)   43
Aegilops_tauschii_22 46
Brachypodium_distachyon_   (Stiff brome)   22
Oryza_barthii_22   (African wild rice)   29
Oryza_meridionalis_22 11
Oryza_glumaepatula_22 17
Oryza_glaberrima   (African rice)   14
Oryza_punctata_22 12
Oryza_nivara_22 25
Oryza_brachyantha_22   (Malo sina)   12
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   22
Oryza_sativa_v193   (Rice)   20
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   11
Panicum_virgatum_v202   (Switchgrass)   46
Setaria_italica_v164   (Foxtail millet)   6
Zea_mays_subsp._mays_   (Maize)   6
Zea_mays_v181   (Maize)   4
Sorghum_bicolor_   (Sorghum)   7
Musa_balbisiana   (Balbis banana)   4
Musa_acuminata_22   (Wild Malaysian banana)   7
Amborella_trichopoda_22 2
Physcomitrella_patens 2
Coccomyxa_subellipsoidea_sp._C-169_v2 6
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 3
Chlorella_vulgaris_ 5
Volvox_carteri_f._nagariensis_ 11
Volvox_carteri_v199 10
Chlamydomonas_reinhardtii_4.0 19
Ostreococcus_sp._RCC809_ 1
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 1
Micromonas_sp._RCC299_ 3
Micromonas_pusilla_CCMP1545_v3.0 3
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 2
Thecamonas_trahens_ATCC_50062_ 14
Bigelowiella_natans_CCMP2755_22 10
Giardia_lamblia_2.3 6
Cyanophora_paradoxa_ 14
Leishmania_mexicana_2.4 12
Leishmania_major_strain_Friedlin_ 10
Leishmania_infantum_JPCM5_2.4 11
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 7
Trypanosoma_vivax_ 14
Trypanosoma_cruzi_strain_CL_Brener 13
Trypanosoma_congolense_2.4 19
Trypanosoma_brucei_gambiense_v4.1 14
Trypanosoma_brucei_TREU927_v4.1 14
Ectocarpus_siliculosus 15
Aureococcus_anophagefferens_ 3
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 7
Pythium_arrhenomanes_ATCC_12531_22 8
Pythium_ultimum_v1.7-2 12
Pythium_aphanidermatum_DAOM_BR444_22 7
Pythium_irregulare_DAOM_BR486_22 11
Pythium_vexans_DAOM_BR484_22 6
Phytophthora_ramorum_1.1   (Sudden oak death agent)   6
Phytophthora_sojae_1.1 10
Phytophthora_infestans_T30-4_ 14
Phytophthora_capsici_ 7
Hyaloperonospora_arabidopsidis_22 1
Phaeodactylum_tricornutumCCAP_1055/1 4
Fragilariopsis_cylindrus 47
Thalassiosira_pseudonana_CCMP1335 14
Perkinsus_marinus_ATCC_50983_ 9
Paramecium_tetraurelia_ 36
Tetrahymena_thermophila_SB210_1_ 94
Ichthyophthirius_multifiliis_strain_G5_ 11
Cryptosporidium_hominis 1
Cryptosporidium_muris 0
Cryptosporidium_parvum_Iowa_II 1
Neospora_caninum 3
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 2
Toxoplasma_gondii_GT1 1
Babesia_bovis_T2Bo_ 0
Theileria_parva__ 1
Theileria_annulata 0
Plasmodium_falciparum_3D7_ 2
Plasmodium_vivax_SaI-1_7.0 4
Plasmodium_knowlesi_strain_H_ 2
Plasmodium_yoelii_ssp._yoelii_1_ 2
Plasmodium_chabaudi_ 0
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 47
Naegleria_gruberi_ 14
Trichomonas_vaginalis_ 19
Guillardia_theta_CCMP2712_v1.0_ 20
Emiliania_huxleyi_CCMP1516_ 18
Pseudonocardia_dioxanivorans_CB1190 1
Corynebacterium_glutamicum_R 0
Clostridium_thermocellum_ATCC_27405 0
Syntrophobotulus_glycolicus_DSM_8271 0
Clostridium_phytofermentans_ISDg 0
Enterococcus_hirae_ATCC_9790 1
Lactobacillus_buchneri_NRRL_B-30929 1
Lactobacillus_buchneri 1
Lactobacillus_acidophilus_30SC 0
Lactococcus_garvieae_ATCC_49156 1
Listeria_welshimeri_serovar_6b_str._SLCC5334 1
Listeria_innocua_Clip11262 0
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 0
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 0
Listeria_ivanovii_subsp._ivanovii_PAM_55 0
Saprospira_grandis_str._Lewin 1
Niastella_koreensis_GR20-10 1
Candidatus_Amoebophilus_asiaticus_5a2 0
Cyclobacterium_marinum_DSM_745 0
Marivirga_tractuosa_DSM_4126 0
Dyadobacter_fermentans_DSM_18053 0
Runella_slithyformis_DSM_19594 0
Porphyromonas_asaccharolytica_DSM_20707 2
Bacteroides_salanitronis_DSM_18170 2
Bacteroides_fragilis_YCH46 1
Zobellia_galactanivorans 0
Cellulophaga_lytica_DSM_7489 0
Capnocytophaga_ochracea_DSM_7271 1
Flavobacterium_branchiophilum_FL-15 0
Flavobacterium_johnsoniae_UW101 0
Candidatus_Protochlamydia_amoebophila_UWE25 0
Simkania_negevensis_Z 0
Isosphaera_pallida_ATCC_43644 0
Planctomyces_brasiliensis_DSM_5305 0
Rhodopirellula_baltica_SH_1 0
Leptospira_interrogans_serovar_Lai_str._IPAV 0
Haliangium_ochraceum_DSM_14365 0
Sorangium_cellulosum_'So_ce_56' 0
Ralstonia_solanacearum_CFBP2957 0
Methylovorus_sp._MP688 1
Orientia_tsutsugamushi_str._Boryong 1
Rickettsia_bellii_OSU_85-389 5
Rickettsia_peacockii_str._Rustic 0
Rickettsia_felis_URRWXCal2 0
Rickettsia_massiliae_MTU5 1
Rickettsia_montanensis_str._OSU_85-930 0
Candidatus_Rickettsia_amblyommii_str._GAT-30V 0
Legionella_longbeachae_NSW150 5
Legionella_pneumophila_str._Corby 2
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 1
Pseudomonas_sp._TKP 0
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 0
Pseudomonas_syringae_pv._tomato_str._DC3000 0
Pseudomonas_sp._VLB120 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   13
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   4
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   2
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   6
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   12
Cryptococcus_neoformans_var._grubii_H99_ 5
Cryptococcus_neoformans_B-3501A_ 5
Cryptococcus_neoformans_JEC21_ 5
Paracoccidioides_brasiliensis_Pb01_ 0
Paracoccidioides_brasiliensis_Pb03_ 1
Coccidioides_posadasii_str._Silveira_ 4
Coccidioides_immitis_RMSCC_3703_ 5
Coccidioides_immitis_RMSCC_2394_ 3
Coccidioides_immitis_H538.4_ 2
Ajellomyces_dermatitidis_ER-3_ 1
Histoplasma_capsulatum_H143 3
Histoplasma_capsulatum_H88 2
Histoplasma_capsulatum_G186AR 2
Aspergillus_fumigatus_A1163_ 3
Candida_albicans_WO-1_ 2
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_PW5 0
Saccharomyces_cerevisiae_FL100 0
Saccharomyces_cerevisiae_CLIB324 0
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 0
Saccharomyces_cerevisiae_T7 0
Saccharomyces_cerevisiae_FostersB 1
Saccharomyces_cerevisiae_FostersO 1
Saccharomyces_cerevisiae_VL3 0
Saccharomyces_cerevisiae_Vin13 1
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_AWRI796 0
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_W303 0
Saccharomyces_cerevisiae_JAY291 0
Saccharomyces_cerevisiae_AWRI1631 0
Saccharomyces_cerevisiae_YPS163 0
Saccharomyces_cerevisiae_CLIB215 0
Saccharomyces_cerevisiae_Y10 0
Saccharomyces_cerevisiae_YJM789_ 0
Saccharomyces_cerevisiae_YJM789 0
Saccharomyces_cerevisiae_RM11-1a 0
Saccharomyces_cerevisiae_RM11-1a_ 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Batrachochytrium_dendrobatidis_JEL423_ 1
Batrachochytrium_dendrobatidis_JAM81_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   6
Hordeum_vulgare_22   (Domesticated barley)   52
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   20
Trypanosoma_brucei_Lister_427_v4.1 16
Neospora_caninum_Nc-Liverpool_6.2 3
Plasmodium_falciparum_HB3_ 1
Plasmodium_falciparum_Dd2_ 2
Corynebacterium_glutamicum_SCgG2 0
Corynebacterium_glutamicum_SCgG1 0
Clostridium_thermocellum_DSM_1313 0
Faecalibacterium_prausnitzii_L2-6 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1
Lactobacillus_plantarum_16 0
Lactobacillus_plantarum_ZJ316 0
Lactobacillus_plantarum_subsp._plantarum_P-8 0
Lactobacillus_plantarum_WCFS1 0
Lactobacillus_acidophilus_La-14 0
Lactobacillus_acidophilus_NCFM 0
Lactococcus_garvieae_Lg2 1
Lactococcus_lactis_subsp._cremoris_KW2 0
Streptococcus_equi_subsp._zooepidemicus 0
Listeria_monocytogenes_EGD_sequence 1
Listeria_monocytogenes_N53-1 1
Listeria_monocytogenes_La111 1
Listeria_monocytogenes_serotype_4b_str._LL195 0
Listeria_monocytogenes_07PF0776 0
Listeria_monocytogenes_M7 0
Listeria_monocytogenes_J1816 0
Listeria_monocytogenes_SLCC5850 1
Listeria_monocytogenes_L312 0
Listeria_monocytogenes_SLCC2479 1
Listeria_monocytogenes_SLCC2378 1
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 1
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 1
Listeria_monocytogenes_serotype_7_str._SLCC2482 0
Listeria_monocytogenes_L99 0
Listeria_monocytogenes_HCC23 0
Listeria_monocytogenes_10403S 1
Listeria_monocytogenes_J0161 1
Listeria_monocytogenes_Finland_1998 1
Listeria_monocytogenes_FSL_R2-561 1
Listeria_monocytogenes_serotype_4b_str._F2365 0
Listeria_monocytogenes_EGD-e 1
Bacillus_toyonensis_BCT-7112 0
Emticicia_oligotrophica_DSM_17448 0
Prevotella_sp._oral_taxon_299_str._F0039 2
Bacteroides_fragilis_638R 1
Bacteroides_fragilis_NCTC_9343 1
Nonlabens_dokdonensis_DSW-6 0
Singulisphaera_acidiphila_DSM_18658 3
Leptospira_interrogans_serovar_Lai_str._56601 0
Ralstonia_solanacearum_FQY_4 0
Ralstonia_solanacearum_Po82 0
Ralstonia_solanacearum_CMR15 0
Ralstonia_solanacearum_GMI1000 0
Orientia_tsutsugamushi_str._Ikeda 1
Rickettsia_bellii_RML369-C 3
Rickettsia_massiliae_str._AZT80 0
Legionella_pneumophila_str._Paris 3
Legionella_pneumophila_str._Lens 2
Legionella_pneumophila_subsp._pneumophila_LPE509 2
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 2
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 2
Legionella_pneumophila_subsp._pneumophila 3
Legionella_pneumophila_subsp._pneumophila 2
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 2
Legionella_pneumophila_2300/99_Alcoy 2
Pseudomonas_syringae_pv._phaseolicola_1448A 0
Pseudomonas_syringae_pv._syringae_B728a 0
Pseudomonas_putida_H8234 0
Pseudomonas_putida_GB-1 0
Pseudomonas_fluorescens_F113 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   8
Pan_troglodytes_69_2.1.4   (Chimpanzee)   9
Gorilla_gorilla_69_3.1   (Western gorilla)   10
Pongo_abelii_69_2   (Sumatran orangutan)   8
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   8
Macaca_mulatta_69_1   (Rhesus monkey)   7
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   8
Otolemur_garnettii_69_3   (Small-eared galago)   7
Microcebus_murinus_69_1   (Gray mouse lemur)   9
Rattus_norvegicus_69_3.4   (Norway rat)   8
Mus_musculus_69_38   (House mouse)   9
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   8
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   8
Cavia_porcellus_69_3   (Domestic guinea pig)   7
Oryctolagus_cuniculus_69_2   (Rabbit)   7
Ochotona_princeps_69   (American pika)   8
Tupaia_belangeri_69   (Northern tree shrew)   6
Sus_scrofa_69_10.2   (Pig)   7
Bos_taurus_69_3.1   (Cattle)   8
Vicugna_pacos_69_1   (Alpaca)   3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   9
Mustela_putorius_furo_69_1.0   (Domestic ferret)   7
Ailuropoda_melanoleuca_69_1   (Giant panda)   6
Canis_familiaris_69_3.1   (Dog)   7
Felis_catus_69   (Domestic cat)   4
Equus_caballus_69_2   (Horse)   8
Myotis_lucifugus_69_2.0   (Little brown bat)   5
Pteropus_vampyrus_69_1   (Large flying fox)   6
Sorex_araneus_69_1   (European shrew)   6
Erinaceus_europaeus_69   (Western European hedgehog)   6
Procavia_capensis_69_1   (Cape rock hyrax)   4
Loxodonta_africana_69_3   (African savanna elephant)   6
Echinops_telfairi_69   (Small Madagascar hedgehog)   7
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   7
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   5
Macropus_eugenii_69_1.0   (Tammar wallaby)   5
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   11
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   5
Ornithorhynchus_anatinus_69_5   (Platypus)   6
Petromyzon_marinus_69_7.0   (Sea lamprey)   3
Meleagris_gallopavo_69_2   (Turkey)   3
Gallus_gallus_69_2   (Chicken)   7
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   5
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   7
Anolis_carolinensis_69_2.0   (Green anole)   10
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   5
Latimeria_chalumnae_69_1   (Coelacanth)   6
Gadus_morhua_69_1   (Atlantic cod)   4
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Takifugu_rubripes_69_4   (Torafugu)   5
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   2
Oryzias_latipes_69_1   (Japanese medaka)   2
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   7
Oreochromis_niloticus_69_1.0   (Nile tilapia)   4
Danio_rerio_69_9   (Zebrafish)   6
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   5
Drosophila_melanogaster_69_5   (Fruit fly)   4
Caenorhabditis_elegans_69_215   (Roundworm)   11
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0
Arabidopsis_thaliana_10   (Thale cress)   4

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   16
Homo_sapiens__(NCBI_version)   (Human)   8
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   9
Heliconius_numata__(Incomplete) 1
Loa_loa_v3.3_(Request)   (Eye worm)   6
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   5
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   4
Moniliophthora_perniciosa_FA553__(Genome_survey) 6
Encephalitozoon_intestinalis__(endoparasite) 0
Encephalitozoon_cuniculi_(endoparasite) 0
Picea_sitchensis__(Incomplete)   (Sitka spruce)   0
Lotus_japonicus__(Early_assembly) 9
Malus_x_domestica_(Duplicate)   (Apple)   21
Ricinus_communis__(Early_assembly)   (Castor bean)   3
Nicotiana_benthamiana_0.4.4_(Early_draft) 12
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   6
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   7
Phoenix_dactylifera__(Early_draft)   (Date palm)   6
NCBI_plasmid_sequences_(Plasmids) 3
UniProt__viral_sequences_(Viral) 5
Protozoadb_2010_08_(Protozoadb) 154
STRING_v9.0.5_(STRING) 862
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 7
NCBI_2017_08_genome 9562
Uniprot_2018_03_genome 35340
TargetDB__(Targets) 35
NCBI_viral_sequences_(Viral) 6
Protein_Data_Bank_(all_PDB_sequenc) 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]