SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for 52058,52058,52058,_gap_,57196,57196,57196,57196,57196,49899,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52058 - L domain-like
52058 - L domain-like
52058 - L domain-like
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin
49899 - Concanavalin A-like lectins/glucanases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Otolemur_garnettii_76_3   (Small-eared galago)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Bos_taurus_76_3.1   (Cattle)   0
Loxodonta_africana_76_3   (African savanna elephant)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Saccoglossus_kowalevskii_v3.0 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   3

Longest transcript per gene
Genome     Number
Otolemur_garnettii_69_3   (Small-eared galago)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Bos_taurus_69_3.1   (Cattle)   0
Loxodonta_africana_69_3   (African savanna elephant)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 1
NCBI_2017_08_genome 6
Uniprot_2018_03_genome 468

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]