SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for 52058,52058,_gap_,52058,_gap_,57196,57196,57196,57196,57196,49899,57196,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52058 - L domain-like
52058 - L domain-like
52058 - L domain-like
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin
57196 - EGF/Laminin
49899 - Concanavalin A-like lectins/glucanases
57196 - EGF/Laminin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Papio_anubis_76   (Olive baboon)   1
Otolemur_garnettii_76_3   (Small-eared galago)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ovis_aries_76_3.1   (Sheep)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Anolis_carolinensis_76_2.0   (Green anole)   1
Onchocerca_volvulus_22 1

Longest transcript per gene
Genome     Number
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Anolis_carolinensis_69_2.0   (Green anole)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 2
NCBI_2017_08_genome 18
Uniprot_2018_03_genome 1500

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]