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  Home > SCOP hierarchy > Domain combination - 52058,_gap_

Domain combinations for 52058,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52058 - L domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   80
Pan_troglodytes_76_2.1.4   (Chimpanzee)   36
Gorilla_gorilla_76_3.1   (Western gorilla)   52
Pongo_abelii_76_2   (Sumatran orangutan)   35
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   37
Papio_anubis_76   (Olive baboon)   40
Macaca_mulatta_76_1   (Rhesus monkey)   39
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   59
Otolemur_garnettii_76_3   (Small-eared galago)   40
Microcebus_murinus_76_1   (Gray mouse lemur)   23
Rattus_norvegicus_76_5.0   (Norway rat)   42
Mus_musculus_76_38   (House mouse)   60
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   28
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   38
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   33
Cavia_porcellus_76_3   (Domestic guinea pig)   37
Oryctolagus_cuniculus_76_2   (Rabbit)   33
Ochotona_princeps_76   (American pika)   27
Tupaia_belangeri_76   (Northern tree shrew)   25
Sus_scrofa_76_10.2   (Pig)   37
Bos_taurus_76_3.1   (Cattle)   38
Ovis_aries_76_3.1   (Sheep)   37
Vicugna_pacos_76_1   (Alpaca)   20
Tursiops_truncatus_76_1   (Bottlenose dolphin)   29
Mustela_putorius_furo_76_1.0   (Domestic ferret)   35
Ailuropoda_melanoleuca_76_1   (Giant panda)   38
Canis_familiaris_76_3.1   (Dog)   38
Felis_catus_76_6.2   (Domestic cat)   39
Equus_caballus_76_2   (Horse)   37
Myotis_lucifugus_76_2.0   (Little brown bat)   35
Pteropus_vampyrus_76_1   (Large flying fox)   29
Sorex_araneus_76_1   (European shrew)   27
Erinaceus_europaeus_76   (Western European hedgehog)   18
Procavia_capensis_76_1   (Cape rock hyrax)   24
Loxodonta_africana_76_3   (African savanna elephant)   36
Echinops_telfairi_76   (Small Madagascar hedgehog)   30
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   35
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   20
Macropus_eugenii_76_1.0   (Tammar wallaby)   24
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   44
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   27
Ornithorhynchus_anatinus_76_5   (Platypus)   30
Saccoglossus_kowalevskii_v3.0 29
Petromyzon_marinus_76_7.0   (Sea lamprey)   8
Meleagris_gallopavo_76_2   (Turkey)   29
Gallus_gallus_76_4   (Chicken)   28
Anas_platyrhynchos_76_1.0   (Mallard)   23
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   27
Ficedula_albicollis_76_1.0   (Collared flycatcher)   23
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   43
Anolis_carolinensis_76_2.0   (Green anole)   34
Xenopus_laevis_   (African clawed frog)   39
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   39
Latimeria_chalumnae_76_1   (Coelacanth)   42
Lepisosteus_oculatus_76   (Spotted gar)   39
Gadus_morhua_76_1   (Atlantic cod)   24
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   36
Takifugu_rubripes_76_4   (Torafugu)   59
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   33
Oryzias_latipes_76_1   (Japanese medaka)   32
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   40
Poecilia_formosa_76   (Amazon molly)   38
Oreochromis_niloticus_76_1.0   (Nile tilapia)   45
Astyanax_mexicanus_76   (Mexican tetra)   42
Danio_rerio_76_9   (Zebrafish)   47
Oikopleura_dioica 18
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   22
Ciona_intestinalis_76   (Vase tunicate)   18
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   34
Adineta_vaga 31
Octopus_bimaculoides_280 20
Crassostrea_gigas_22   (Pacific oyster)   22
Lottia_gigantea_   (Owl limpet)   12
Helobdella_robusta_ 8
Capitella_sp._I_ 54
Danaus_plexippus_OGS1.0   (Monarch butterfly)   21
Heliconius_melpomene_   (Postman butterfly)   11
Bombyx_mori_   (Domestic silkworm)   15
Nasonia_vitripennis_   (Jewel wasp)   8
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   18
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   17
Linepithema_humile_v1.1   (Argentine ant)   15
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   18
Solenopsis_invicta_v.2.2.3   (Red fire ant)   14
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   17
Atta_cephalotes_v1.1 14
Camponotus_floridanus_v3.3   (Florida carpenter ant)   10
Lucilia_cuprina   (Australian sheep blowfly)   9
Drosophila_grimshawi_1.3 13
Drosophila_willistoni_1.3 17
Drosophila_pseudoobscura_2.13 15
Drosophila_persimilis_1.3 16
Drosophila_suzukii 15
Drosophila_yakuba_1.3 15
Drosophila_simulans_1.3 16
Drosophila_sechellia_1.3 16
Drosophila_melanogaster_76_5   (Fruit fly)   28
Drosophila_erecta_1.3 16
Drosophila_ananassae_1.3 17
Drosophila_virilis_1.2 16
Drosophila_mojavensis_1.3 14
Megaselia_scalaris_22 6
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   32
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   35
Anopheles_darlingi_22   (American malaria mosquito)   20
Anopheles_gambiae_49_3j   (African malaria mosquito)   26
Tribolium_castaneum_3.0   (Red flour beetle)   15
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   7
Acyrthosiphon_pisum_   (Pea aphid)   5
Rhodnius_prolixus_22 14
Daphnia_pulex_   (Common water flea)   12
Strigamia_maritima_22 8
Sarcoptes_scabiei 6
Tetranychus_urticae_   (Two-spotted spider mite)   3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   10
Pristionchus_pacificus_ 9
Meloidogyne_incognita_   (Southern root-knot nematode)   8
Meloidogyne_hapla_ 5
Onchocerca_volvulus_22 5
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   7
Caenorhabditis_japonica_ 12
Caenorhabditis_brenneri_ 18
Caenorhabditis_remanei_ 18
Caenorhabditis_elegans_76_235   (Roundworm)   14
Caenorhabditis_briggsae_2 12
Trichinella_spiralis_22 5
Hymenolepis_microstoma_ 7
Echinococcus_multilocularis_ 11
Echinococcus_granulosus_ 11
Taenia_solium_   (Pork tapeworm)   10
Schistosoma_mansoni_ 18
Mnemiopsis_leidyi   (Sea walnut)   14
Thelohanellus_kitauei 0
Acropora_digitifera_v1.0 14
Nematostella_vectensis_1.0   (Starlet sea anemone)   16
Hydra_vulgaris 9
Amphimedon_queenslandica 13
Trichoplax_adhaerens_ 12
Proterospongia_sp._ATCC_50818_ 13
Monosiga_brevicollis_ 6
Sphaeroforma_arctica_JP610_ 6
Capsaspora_owczarzaki_ATCC_30864_ 17
Conidiobolus_coronatus_NRRL28638_v1.0 5
Mortierella_verticillata_NRRL_6337_ 5
Phycomyces_blakesleeanus_ 4
Rhizopus_oryzae_RA_99-880_ 6
Mucor_circinelloides_ 1
Rhizomucor_miehei_CAU432_ 2
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 0
Ustilago_maydis_ 0
Mixia_osmundae_IAM_14324_v1.0 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1
Melampsora_laricis-populina_ 3
Rhodotorula_graminis_WP1_v1.0 4
Sporobolomyces_roseus_IAM_13481_ 3
Microbotryum_violaceum_22 1
Wallemia_sebi_v1.0 1
Sphaerobolus_stellatus_v1.0 3
Piloderma_croceum_F_1598_v1.0 2
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Coniophora_puteana 1
Hydnomerulius_pinastri_v2.0 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_microcarpus_441_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 2
Scleroderma_citrinum_Foug_A_v1.0 2
Coprinopsis_cinerea_okayama7_130_v3 0
Pleurotus_ostreatus_   (Oyster mushroom)   2
Amanita_thiersii_Skay4041_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1
Galerina_marginata_v1.0 3
Hebeloma_cylindrosporum_h7_v2.0 2
Laccaria_bicolor_S238N-H82_ 1
Agaricus_bisporus_var._bisporus_ 3
Schizophyllum_commune_ 2
Stereum_hirsutum_FP-91666_SS1__v1.0 2
Heterobasidion_annosum_ 3
Gloeophyllum_trabeumv1.0 5
Punctularia_strigosozonata_v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 11
Fomitiporia_mediterranea_v1.0 1
Tulasnella_calospora_AL13/4D_v1.0 6
Postia_placenta_ 3
Wolfiporia_cocos_MD-104_SS10__v1.0 2
Fomitopsis_pinicolav1.0 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 5
Phanerochaete_chrysosporium_RP-78_2.1 0
Dichomitus_squalens 1
Trametes_versicolor_v1.0 2
Tremella_mesenterica_   (Witches' butter)   1
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 2
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 0
Podospora_anserina_ 1
Sporotrichum_thermophile_ATCC_42464_ 1
Thielavia_terrestris_NRRL_8126_ 0
Chaetomium_globosum_CBS_148.51_ 1
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 1
Neurospora_crassa_OR74A_ 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Verticillium_albo-atrum_VaMs.102_ 2
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 1
Glomerella_graminicola_22 1
Fusarium_graminearum_ 0
Nectria_haematococca_mpVI_ 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1
Fusarium_verticillioides_7600_ 0
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 0
Trichoderma_citrinoviride_v1.0 0
Trichoderma_reesei_1.2 0
Trichoderma_virens_Gv29-8_ 0
Trichoderma_longibrachiatum_ATCC_18648_v1.0 0
Trichoderma_harzianum_CBS_226.95_v1.0 0
Amorphotheca_resinae_v1.0   (Creosote fungus)   0
Botrytis_cinerea_B05.10_ 0
Sclerotinia_sclerotiorum_ 1
Blumeria_graminis_22 0
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 0
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 0
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   0
Alternaria_brassicicola_ 0
Cochliobolus_lunatus_m118_v2.0 0
Pyrenophora_teres_f._teres_22 0
Pyrenophora_tritici-repentis_ 0
Stagonospora_nodorum_ 1
Mycosphaerella_graminicola_IPO323_ 0
Zasmidium_cellare_ATCC_36951_v1.0 0
Dothistroma_septosporum 0
Septoria_musiva_v1.0 0
Mycosphaerella_fijiensis_CIRAD86_ 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Paracoccidioides_brasiliensis_Pb18_ 2
Coccidioides_posadasii_RMSCC_3488_ 1
Coccidioides_immitis_RS_ 1
Ajellomyces_dermatitidis_SLH14081_ 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1
Microsporum_canis_CBS_113480_ 2
Trichophyton_equinum_CBS_127.97_ 2
Trichophyton_verrucosum_HKI_0517_ 1
Arthroderma_benhamiae_CBS_112371_ 2
Trichophyton_tonsurans_CBS_112818_ 2
Trichophyton_rubrum_CBS_118892_ 2
Uncinocarpus_reesii_1704_ 0
Aspergillus_zonatus_v1.0 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1
Penicillium_chrysogenum_v1.0 1
Aspergillus_acidus_v1.0 2
Aspergillus_fumigatus_Af293 4
Aspergillus_brasiliensis_v1.0 2
Aspergillus_nidulans_FGSC_A4_ 4
Aspergillus_sydowii_v1.0 5
Aspergillus_versicolor_v1.0 5
Aspergillus_glaucus 2
Aspergillus_carbonarius_ITEM_5010_ 4
Neosartorya_fischeri_NRRL_181_ 3
Aspergillus_terreus_NIH2624_ 2
Aspergillus_tubingensis_v1.0 2
Aspergillus_wentii_v1.0 2
Aspergillus_oryzae_RIB40_ 4
Aspergillus_niger_22 2
Aspergillus_niger_ATCC_1015_ 3
Aspergillus_flavus_NRRL3357_ 4
Aspergillus_clavatus_NRRL_1_ 4
Penicillium_marneffei_ATCC_18224_ 2
Tuber_melanosporum_Mel28_22 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1
Hansenula_polymorpha_v2.0 0
Dekkera_bruxellensis_CBS_2499_v2.0 1
Pichia_membranifaciensv1.0 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1
Candida_dubliniensis_CD36_ 2
Candida_tropicalis_MYA-3404_ 1
Candida_parapsilosis_ 0
Candida_albicans_SC5314 4
Lodderomyces_elongisporus_NRRL_YB-4239_ 0
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1
Pichia_stipitis_CBS_6054_ 1
Candida_guilliermondii_ATCC_6260_ 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1
Debaromyces_hansenii 0
Wickerhamomyces_anomalus 1
Pichia_pastoris_GS115_ 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 0
Candida_lusitaniae_ATCC_42720_ 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 2
Vanderwaltozyma_polyspora_DSM_70294_ 0
Candida_glabrata_CBS138 1
Kluyveromyces_thermotolerans_CBS_6340 0
Lachancea_kluyveri_ 0
Kluyveromyces_waltii 0
Ashbya_gossypii_ATCC_10895_ 0
Zygosaccharomyces_rouxii_ 0
Saccharomyces_mikatae_MIT 1
Saccharomyces_paradoxus_MIT 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   2
Saccharomyces_bayanus_MIT 2
Kluyveromyces_lactis 1
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_octosporus_yFS286_ 1
Schizosaccharomyces_japonicus_yFS275_ 1
Schizosaccharomyces_pombe   (Fission yeast)   1
Catenaria_anguillulae_PL171_v1.0 25
Allomyces_macrogynus_ATCC_38327_ 23
Spizellomyces_punctatus_DAOM_BR117_ 9
Dictyostelium_discoideum 8
Dictyostelium_purpureum_ 40
Entamoeba_dispar_1.2 8
Entamoeba_invadens_1.2 22
Entamoeba_histolytica_1 6
Selaginella_moellendorffii_ 18
Pinus_taeda   (Loblolly pine)   67
Picea_abies   (Norway spruce)   54
Eucalyptus_grandis_v201   (Rose gum)   64
Theobroma_cacao_B97-61/B2_v1   (Cacao)   43
Gossypium_raimondii_v221 43
Citrus_clementina_v165 39
Citrus_sinensis_v154   (Sweet orange)   90
Thellungiella_halophila_v173 16
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   24
Capsella_rubella_v183 30
Arabidopsis_lyrata_   (Lyrate rockcress)   14
Arabidopsis_thaliana_10   (Thale cress)   11
Carica_papaya_   (Papaya)   12
Medicago_truncatula_   (Barrel medic)   62
Phaseolus_vulgaris_v186   (French bean)   14
Glycine_max_v109   (Soybean)   43
Cucumis_sativus_v122   (Cucumber)   11
Fragaria_vesca_   (Wild strawberry)   49
Malus_domestica_v196   (Apple)   164
Prunus_persica_v139   (Peach)   32
Linum_usitatissimum_v200   (Flax)   28
Manihot_esculenta_v147   (Cassava)   47
Populus_trichocarpa_v156   (Black cottonwood)   55
Vitis_vinifera_   (Wine grape)   42
Mimulus_guttatus_v140   (Spotted monkey flower)   18
Solanum_lycopersicum_v.2.3   (Tomato)   19
Solanum_tuberosum_   (Potato)   84
Actinidia_chinensis_Hongyang_ 13
Aquilegia_coerulea_v195 15
Triticum_urartu_22 19
Triticum_aestivum_22   (Bread wheat)   100
Aegilops_tauschii_22 28
Brachypodium_distachyon_   (Stiff brome)   19
Oryza_barthii_22   (African wild rice)   33
Oryza_meridionalis_22 23
Oryza_glumaepatula_22 26
Oryza_glaberrima   (African rice)   27
Oryza_punctata_22 25
Oryza_nivara_22 27
Oryza_brachyantha_22   (Malo sina)   11
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   31
Oryza_sativa_v193   (Rice)   29
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   16
Panicum_virgatum_v202   (Switchgrass)   67
Setaria_italica_v164   (Foxtail millet)   16
Zea_mays_subsp._mays_   (Maize)   20
Zea_mays_v181   (Maize)   23
Sorghum_bicolor_   (Sorghum)   22
Musa_balbisiana   (Balbis banana)   11
Musa_acuminata_22   (Wild Malaysian banana)   24
Amborella_trichopoda_22 37
Physcomitrella_patens 15
Coccomyxa_subellipsoidea_sp._C-169_v2 7
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 5
Chlorella_vulgaris_ 7
Volvox_carteri_f._nagariensis_ 10
Volvox_carteri_v199 11
Chlamydomonas_reinhardtii_4.0 8
Ostreococcus_sp._RCC809_ 1
Ostreococcus_lucimarinus_CCE9901_ 2
Ostreococcus_tauri_ 0
Bathycoccus_prasinos_ 3
Micromonas_sp._RCC299_ 6
Micromonas_pusilla_CCMP1545_v3.0 5
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 25
Bigelowiella_natans_CCMP2755_22 13
Giardia_lamblia_2.3 9
Cyanophora_paradoxa_ 10
Leishmania_mexicana_2.4 15
Leishmania_major_strain_Friedlin_ 14
Leishmania_infantum_JPCM5_2.4 15
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 20
Trypanosoma_vivax_ 17
Trypanosoma_cruzi_strain_CL_Brener 10
Trypanosoma_congolense_2.4 12
Trypanosoma_brucei_gambiense_v4.1 13
Trypanosoma_brucei_TREU927_v4.1 12
Ectocarpus_siliculosus 35
Aureococcus_anophagefferens_ 8
Albugo_laibachii_22 8
Pythium_iwayamai_DAOM_BR242034_22 19
Pythium_arrhenomanes_ATCC_12531_22 13
Pythium_ultimum_v1.7-2 18
Pythium_aphanidermatum_DAOM_BR444_22 14
Pythium_irregulare_DAOM_BR486_22 17
Pythium_vexans_DAOM_BR484_22 16
Phytophthora_ramorum_1.1   (Sudden oak death agent)   11
Phytophthora_sojae_1.1 10
Phytophthora_infestans_T30-4_ 16
Phytophthora_capsici_ 14
Hyaloperonospora_arabidopsidis_22 2
Phaeodactylum_tricornutumCCAP_1055/1 0
Fragilariopsis_cylindrus 14
Thalassiosira_pseudonana_CCMP1335 4
Perkinsus_marinus_ATCC_50983_ 10
Paramecium_tetraurelia_ 25
Tetrahymena_thermophila_SB210_1_ 20
Ichthyophthirius_multifiliis_strain_G5_ 10
Cryptosporidium_hominis 2
Cryptosporidium_muris 4
Cryptosporidium_parvum_Iowa_II 3
Neospora_caninum 5
Toxoplasma_gondii_VEG 3
Toxoplasma_gondii_ME49 3
Toxoplasma_gondii_GT1 3
Babesia_bovis_T2Bo_ 2
Theileria_parva__ 2
Theileria_annulata 2
Plasmodium_falciparum_3D7_ 5
Plasmodium_vivax_SaI-1_7.0 5
Plasmodium_knowlesi_strain_H_ 4
Plasmodium_yoelii_ssp._yoelii_1_ 2
Plasmodium_chabaudi_ 4
Plasmodium_berghei_ANKA_ 4
Symbiodinium_minutum_clade_B1_v1.2 21
Naegleria_gruberi_ 6
Trichomonas_vaginalis_ 170
Guillardia_theta_CCMP2712_v1.0_ 23
Emiliania_huxleyi_CCMP1516_ 36
Leptolyngbya_sp._PCC_7376 0
Microcoleus_sp._PCC_7113 1
Trichodesmium_erythraeum_IMS101 0
Rivularia_sp._PCC_7116 0
Mycoplasma_fermentans_M64 0
Mycoplasma_hominis_ATCC_23114 0
Conexibacter_woesei_DSM_14684 0
Eggerthella_lenta_DSM_2243 0
Slackia_heliotrinireducens_DSM_20476 1
Coriobacterium_glomerans_PW2 1
Kineococcus_radiotolerans_SRS30216 1
Catenulispora_acidiphila_DSM_44928 0
Streptosporangium_roseum_DSM_43021 0
Streptomyces_bingchenggensis_BCW-1 1
Amycolatopsis_mediterranei_U32 0
Propionibacterium_propionicum_F0230a 0
Cellulomonas_fimi_ATCC_484 0
Arcanobacterium_haemolyticum_DSM_20595 0
Herpetosiphon_aurantiacus_DSM_785 1
Deinococcus_maricopensis_DSM_21211 1
Marinithermus_hydrothermalis_DSM_14884 1
Finegoldia_magna_ATCC_29328 0
Erysipelothrix_rhusiopathiae_str._Fujisawa 1
Natranaerobius_thermophilus_JW/NM-WN-LF 0
Clostridiales_genomosp._BVAB3_str._UPII9-5 0
Clostridium_clariflavum_DSM_19732 0
Eubacterium_siraeum 0
Ethanoligenens_harbinense_YUAN-3 1
Faecalibacterium_prausnitzii 0
Ruminococcus_sp. 0
Ruminococcus_bromii 0
Ruminococcus_albus_7 3
Desulfosporosinus_orientis_DSM_765 0
Syntrophobotulus_glycolicus_DSM_8271 0
Desulfitobacterium_hafniense_Y51 0
Desulfotomaculum_acetoxidans_DSM_771 0
Desulfotomaculum_kuznetsovii_DSM_6115 0
Acetobacterium_woodii_DSM_1030 1
Eubacterium_limosum_KIST612 1
Clostridium_phytofermentans_ISDg 1
Clostridium_lentocellum_DSM_5427 0
[Ruminococcus]_obeum 0
Eubacterium_rectale_M104/1 0
Roseburia_hominis_A2-183 1
Roseburia_intestinalis 0
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 0
Alkaliphilus_metalliredigens_QYMF 2
Clostridium_novyi_NT 0
Clostridium_kluyveri_DSM_555 0
Clostridium_beijerinckii_NCIMB_8052 0
Clostridium_tetani_E88 0
Clostridium_cellulovorans_743B 0
Clostridium_botulinum_A_str._ATCC_3502 0
Halanaerobium_praevalens_DSM_2228 0
Enterococcus_hirae_ATCC_9790 0
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 0
Lactobacillus_casei_ATCC_334 0
Lactobacillus_sakei_subsp._sakei_23K 0
Lactobacillus_plantarum_JDM1 0
Lactobacillus_buchneri_NRRL_B-30929 2
Lactobacillus_buchneri 1
Lactobacillus_brevis_ATCC_367 0
Pediococcus_claussenii_ATCC_BAA-344 1
Lactococcus_lactis_subsp._cremoris_MG1363 0
Streptococcus_intermedius_JTH08 0
Streptococcus_equi_subsp._equi_4047 0
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 0
Streptococcus_uberis_0140J 0
Streptococcus_pyogenes_str._Manfredo 0
Streptococcus_agalactiae_A909 0
Streptococcus_suis_P1/7 0
Listeria_welshimeri_serovar_6b_str._SLCC5334 3
Listeria_innocua_Clip11262 5
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 2
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 4
Listeria_ivanovii_subsp._ivanovii_PAM_55 3
Solibacillus_silvestris_StLB046 0
Bacillus_weihenstephanensis_KBAB4 1
Candidatus_Cloacamonas_acidaminovorans 0
Pelodictyon_phaeoclathratiforme_BU-1 2
Chlorobium_phaeobacteroides_DSM_266 1
Chloroherpeton_thalassium_ATCC_35110 0
Haliscomenobacter_hydrossis_DSM_1100 2
Saprospira_grandis_str._Lewin 0
Chitinophaga_pinensis_DSM_2588 0
Flexibacter_litoralis_DSM_6794 0
Candidatus_Amoebophilus_asiaticus_5a2 0
Cyclobacterium_marinum_DSM_745 1
Marivirga_tractuosa_DSM_4126 0
Fibrella_aestuarina 0
Dyadobacter_fermentans_DSM_18053 0
Cytophaga_hutchinsonii_ATCC_33406 2
Spirosoma_linguale_DSM_74 0
Runella_slithyformis_DSM_19594 0
Parabacteroides_distasonis_ATCC_8503 1
Tannerella_forsythia_ATCC_43037 0
Paludibacter_propionicigenes_WB4 0
Odoribacter_splanchnicus_DSM_20712 0
Bacteroides_sp._CF50 0
Prevotella_melaninogenica_ATCC_25845 3
Prevotella_intermedia_17 2
Prevotella_denticola_F0289 1
Prevotella_ruminicola_23 0
Porphyromonas_asaccharolytica_DSM_20707 7
Porphyromonas_gingivalis_ATCC_33277 0
Alistipes_finegoldii_DSM_17242 0
Bacteroides_salanitronis_DSM_18170 0
Bacteroides_helcogenes_P_36-108 0
Bacteroides_thetaiotaomicron_VPI-5482 0
Bacteroides_fragilis_YCH46 0
Fluviicola_taffensis_DSM_16823 1
Zunongwangia_profunda_SM-A87 1
Lacinutrix_sp._5H-3-7-4 0
Croceibacter_atlanticus_HTCC2559 0
Aequorivita_sublithincola_DSM_14238 1
Muricauda_ruestringensis_DSM_13258 0
Cellulophaga_algicola_DSM_14237 2
Cellulophaga_lytica_DSM_7489 0
Polaribacter_sp._MED152 0
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 0
Capnocytophaga_ochracea_DSM_7271 0
Flavobacterium_indicum_GPTSA100-9 1
Flavobacterium_psychrophilum_JIP02/86 10
Flavobacterium_branchiophilum_FL-15 2
Flavobacterium_columnare_ATCC_49512 0
Flavobacterium_johnsoniae_UW101 1
Candidatus_Protochlamydia_amoebophila_UWE25 1
Parachlamydia_acanthamoebae_UV-7 0
Planctomyces_limnophilus_DSM_3776 0
Pirellula_staleyi_DSM_6068 1
Coraliomargarita_akajimensis_DSM_45221 0
Fretibacterium_fastidiosum 1
Leptospira_interrogans_serovar_Lai_str._IPAV 0
Brachyspira_intermedia_PWS/A 0
Sphaerochaeta_coccoides_DSM_17374 0
Spirochaeta_caldaria_DSM_7334 1
Treponema_azotonutricium_ZAS-9 0
Treponema_primitia_ZAS-2 1
Treponema_succinifaciens_DSM_2489 1
Treponema_denticola_ATCC_35405 1
Spirochaeta_africana_DSM_8902 2
Desulfurispirillum_indicum_S5 0
Granulicella_tundricola_MP5ACTX9 0
Sebaldella_termitidis_ATCC_33386 1
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 0
candidate_division_SR1_bacterium_RAAC1_SR1_1 0
Arcobacter_butzleri_RM4018 1
Helicobacter_hepaticus_ATCC_51449 0
Desulfatibacillum_alkenivorans_AK-01 0
Babela_massiliensis 0
Haliangium_ochraceum_DSM_14365 1
Sorangium_cellulosum_'So_ce_56' 0
Corallococcus_coralloides_DSM_2259 0
Myxococcus_xanthus_DK_1622 0
Myxococcus_fulvus_HW-1 0
Ralstonia_solanacearum_CFBP2957 0
Acidovorax_citrulli_AAC00-1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Ruegeria_pomeroyi_DSS-3 1
Rhodobacter_capsulatus_SB_1003 1
Polymorphum_gilvum_SL003B-26A1 0
Sinorhizobium_fredii_NGR234 0
Agrobacterium_sp._H13-3 1
Candidatus_Liberibacter_asiaticus_str._psy62 0
Bradyrhizobium_japonicum_USDA_110 0
Aliivibrio_salmonicida_LFI1238 1
Vibrio_harveyi_ATCC_BAA-1116 1
Ferrimonas_balearica_DSM_9799 0
Shewanella_piezotolerans_WP3 1
Shewanella_halifaxensis_HAW-EB4 0
Shewanella_sediminis_HAW-EB3 0
Shewanella_pealeana_ATCC_700345 0
Colwellia_psychrerythraea_34H 0
Hahella_chejuensis_KCTC_2396 0
Xanthomonas_axonopodis_pv._citri_str._306 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 1
Xanthomonas_campestris_pv._campestris_str._B100 0
Thioalkalivibrio_sp._K90mix 0
Edwardsiella_ictaluri_93-146 0
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1
Yersinia_pestis_Pestoides_F 2
Sodalis_glossinidius_str._'morsitans' 1
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 0
Shigella_sonnei_Ss046 3
Shigella_flexneri_5_str._8401 2
Shigella_dysenteriae_Sd197 5
Shigella_boydii_CDC_3083-94 4
Salmonella_bongori_NCTC_12419 0
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1
Citrobacter_rodentium_ICC168 1
Pseudomonas_sp._TKP 0
Pseudomonas_sp._UW4 0
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 0
Pseudomonas_entomophila_L48 0
Pseudomonas_syringae_pv._tomato_str._DC3000 0
Pseudomonas_putida_F1 0
Pseudomonas_fluorescens_SBW25 0
Pseudomonas_sp._VLB120 0
Psychrobacter_cryohalolentis_K5 1
Methanosaeta_concilii_GP6 0
Methanosarcina_acetivorans_C2A 0
Methanosarcina_mazei_Go1 0
Methanosarcina_barkeri_str._Fusaro 0
Methanoculleus_bourgensis_MS2 1
Thermoplasmatales_archaeon_BRNA1 0
Methanobrevibacter_ruminantium_M1 0
Acholeplasma_laidlawii_PG-8A 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   54
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   28
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   27
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   13
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   9
Cryptococcus_neoformans_var._grubii_H99_ 1
Cryptococcus_neoformans_B-3501A_ 1
Cryptococcus_neoformans_JEC21_ 1
Paracoccidioides_brasiliensis_Pb01_ 2
Paracoccidioides_brasiliensis_Pb03_ 1
Coccidioides_posadasii_str._Silveira_ 1
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 1
Coccidioides_immitis_H538.4_ 0
Ajellomyces_dermatitidis_ER-3_ 2
Histoplasma_capsulatum_H143 2
Histoplasma_capsulatum_H88 1
Histoplasma_capsulatum_G186AR 2
Aspergillus_fumigatus_A1163_ 3
Candida_albicans_WO-1_ 4
Saccharomyces_cerevisiae_UC5 2
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 2
Saccharomyces_cerevisiae_YJM269 1
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_FostersB 1
Saccharomyces_cerevisiae_FostersO 3
Saccharomyces_cerevisiae_VL3 1
Saccharomyces_cerevisiae_Vin13 3
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_AWRI796 2
Saccharomyces_cerevisiae_Sigma1278b 2
Saccharomyces_cerevisiae_W303 2
Saccharomyces_cerevisiae_JAY291 2
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_CLIB215 2
Saccharomyces_cerevisiae_Y10 1
Saccharomyces_cerevisiae_YJM789_ 2
Saccharomyces_cerevisiae_YJM789 2
Saccharomyces_cerevisiae_RM11-1a 1
Saccharomyces_cerevisiae_RM11-1a_ 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Schizosaccharomyces_pombe_972h-_ 1
Batrachochytrium_dendrobatidis_JEL423_ 7
Batrachochytrium_dendrobatidis_JAM81_ 8
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   35
Hordeum_vulgare_22   (Domesticated barley)   67
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   35
Trypanosoma_brucei_Lister_427_v4.1 14
Neospora_caninum_Nc-Liverpool_6.2 5
Plasmodium_falciparum_HB3_ 5
Plasmodium_falciparum_Dd2_ 5
Chamaesiphon_minutus_PCC_6605 4
Crinalium_epipsammum_PCC_9333 0
Oscillatoria_nigro-viridis_PCC_7112 1
Cyanothece_sp._PCC_7425 0
Stanieria_cyanosphaera_PCC_7437 0
Mycoplasma_fermentans_JER 0
Mycoplasma_fermentans_PG18 0
Adlercreutzia_equolifaciens_DSM_19450 0
Nocardiopsis_alba_ATCC_BAA-2165 0
Streptomyces_fulvissimus_DSM_40593 0
Amycolatopsis_mediterranei_RB 0
Amycolatopsis_mediterranei_S699 0
Amycolatopsis_mediterranei_S699 0
Propionibacterium_acidipropionici_ATCC_4875 0
Bifidobacterium_thermophilum_RBL67 2
Actinomyces_odontolyticus_ATCC_17982 0
Erysipelothrix_rhusiopathiae_SY1027 1
Eubacterium_siraeum_V10Sc8a 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 0
Faecalibacterium_prausnitzii_L2-6 0
Ruminococcus_champanellensis_18P13 0
Desulfitobacterium_dichloroeliminans_LMG_P-21439 0
Desulfotomaculum_gibsoniae_DSM_7213 0
Clostridium_difficile_BI1 0
Clostridium_difficile_R20291 0
Clostridium_difficile_CD196 0
Coprococcus_catus_GD/7 1
Roseburia_intestinalis_XB6B4 0
Clostridium_sp._SY8519 0
Clostridium_saccharobutylicum_DSM_13864 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 0
Clostridium_kluyveri_NBRC_12016 0
Clostridium_tetani_genome_12124569 0
Clostridium_botulinum_H04402_065 0
Clostridium_botulinum_BKT015925 0
Clostridium_botulinum_F_str._230613 0
Clostridium_botulinum_F_str._Langeland 0
Clostridium_botulinum_B1_str._Okra 0
Clostridium_botulinum_Ba4_str._657 0
Clostridium_botulinum_A2_str._Kyoto 0
Clostridium_botulinum_A3_str._Loch_Maree 0
Clostridium_botulinum_A_str._Hall 0
Clostridium_botulinum_A_str._ATCC_19397 0
Carnobacterium_maltaromaticum_LMA28 1
Enterococcus_mundtii_QU_25 0
Enterococcus_faecalis_D32 0
Enterococcus_faecalis_V583 0
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 0
Lactobacillus_amylovorus_GRL_1112 0
Lactobacillus_plantarum_16 0
Lactobacillus_plantarum_ZJ316 1
Lactobacillus_plantarum_subsp._plantarum_ST-III 0
Lactobacillus_plantarum_subsp._plantarum_P-8 0
Lactobacillus_plantarum_WCFS1 0
Lactobacillus_brevis_KB290 0
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 0
Lactococcus_lactis_subsp._lactis_IO-1 0
Lactococcus_lactis_subsp._lactis_CV56 0
Lactococcus_lactis_subsp._lactis_Il1403 0
Lactococcus_lactis_subsp._cremoris_KW2 0
Lactococcus_lactis_subsp._cremoris_UC509.9 0
Lactococcus_lactis_subsp._cremoris_A76 0
Lactococcus_lactis_subsp._cremoris_NZ9000 0
Lactococcus_lactis_subsp._cremoris_SK11 0
Streptococcus_constellatus_subsp._pharyngis_C1050 0
Streptococcus_constellatus_subsp._pharyngis_C818 0
Streptococcus_constellatus_subsp._pharyngis_C232 0
Streptococcus_intermedius_B196 0
Streptococcus_intermedius_C270 0
Streptococcus_anginosus_C238 0
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 0
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 0
Streptococcus_equi_subsp._zooepidemicus 0
Streptococcus_dysgalactiae_subsp._equisimilis_167 0
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 0
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 0
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 0
Streptococcus_iniae_SF1 0
Streptococcus_pyogenes_HSC5 0
Streptococcus_pyogenes_A20 0
Streptococcus_pyogenes_MGAS1882 0
Streptococcus_pyogenes_MGAS15252 0
Streptococcus_pyogenes_Alab49 0
Streptococcus_pyogenes_MGAS10750 0
Streptococcus_pyogenes_MGAS10270 0
Streptococcus_pyogenes_MGAS2096 0
Streptococcus_pyogenes_MGAS9429 0
Streptococcus_pyogenes_MGAS6180 0
Streptococcus_pyogenes_NZ131 0
Streptococcus_pyogenes_MGAS8232 0
Streptococcus_pyogenes_MGAS10394 0
Streptococcus_pyogenes_MGAS315 0
Streptococcus_pyogenes_SSI-1 0
Streptococcus_pyogenes_M1_476 0
Streptococcus_pyogenes_MGAS5005 0
Streptococcus_pyogenes_M1_GAS 0
Streptococcus_agalactiae_ILRI112 0
Streptococcus_agalactiae_ILRI005 0
Streptococcus_agalactiae_09mas018883 0
Streptococcus_agalactiae_2-22 0
Streptococcus_agalactiae_GD201008-001 0
Streptococcus_agalactiae_NEM316 0
Streptococcus_agalactiae_2603V/R 0
Streptococcus_suis_T15 0
Streptococcus_suis_TL13 0
Streptococcus_suis_SC070731 0
Streptococcus_suis_S735 0
Streptococcus_suis_ST3 0
Streptococcus_suis_D9 0
Streptococcus_suis_SS12 0
Streptococcus_suis_D12 0
Streptococcus_suis_ST1 0
Streptococcus_suis_A7 0
Streptococcus_suis_JS14 0
Streptococcus_suis_BM407 0
Streptococcus_suis_SC84 0
Streptococcus_suis_GZ1 0
Streptococcus_suis_98HAH33 0
Streptococcus_suis_05ZYH33 0
Thermobacillus_composti_KWC4 1
Listeria_monocytogenes_EGD_sequence 6
Listeria_monocytogenes_N53-1 1
Listeria_monocytogenes_La111 1
Listeria_monocytogenes_serotype_4b_str._LL195 5
Listeria_monocytogenes_07PF0776 5
Listeria_monocytogenes_M7 6
Listeria_monocytogenes_J1-220 4
Listeria_monocytogenes_J1816 3
Listeria_monocytogenes_SLCC2376 6
Listeria_monocytogenes_SLCC5850 6
Listeria_monocytogenes_ATCC_19117 4
Listeria_monocytogenes_L312 4
Listeria_monocytogenes_SLCC2479 6
Listeria_monocytogenes_SLCC7179 4
Listeria_monocytogenes_SLCC2540 5
Listeria_monocytogenes_SLCC2378 4
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 5
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 6
Listeria_monocytogenes_serotype_7_str._SLCC2482 5
Listeria_monocytogenes_08-5578 4
Listeria_monocytogenes_08-5923 4
Listeria_monocytogenes_L99 6
Listeria_monocytogenes_HCC23 6
Listeria_monocytogenes_10403S 6
Listeria_monocytogenes_J0161 5
Listeria_monocytogenes_Finland_1998 6
Listeria_monocytogenes_FSL_R2-561 6
Listeria_monocytogenes_serotype_4b_str._F2365 4
Listeria_monocytogenes_EGD-e 6
Bacillus_thuringiensis_HD-771 1
Bacillus_cereus_biovar_anthracis_str._CI 0
Bacillus_cereus_B4264 1
Bacillus_cereus_G9842 1
Bacillus_cereus_ATCC_14579 1
Bacillus_cereus_ATCC_10987 0
Echinicola_vietnamensis_DSM_17526 0
Prevotella_sp._oral_taxon_299_str._F0039 0
Prevotella_dentalis_DSM_3688 0
Porphyromonas_gingivalis_TDC60 0
Porphyromonas_gingivalis_W83 0
Alistipes_shahii_WAL_8301 0
Bacteroides_xylanisolvens_XB1A 0
Bacteroides_fragilis_638R 0
Bacteroides_fragilis_NCTC_9343 0
Nonlabens_dokdonensis_DSW-6 1
Psychroflexus_torquis_ATCC_700755 1
Riemerella_anatipestifer_RA-CH-2 0
Riemerella_anatipestifer_RA-CH-1 1
Riemerella_anatipestifer_RA-GD 0
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 0
Leptospira_interrogans_serovar_Lai_str._56601 0
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 0
Treponema_pedis_str._T_A4 0
Arcobacter_butzleri_7h1h 1
Arcobacter_butzleri_ED-1 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 0
Sorangium_cellulosum_So0157-2 0
Myxococcus_stipitatus_DSM_14675 0
Pandoraea_pnomenusa_3kgm 1
Ralstonia_solanacearum_FQY_4 0
Ralstonia_solanacearum_Po82 0
Ralstonia_solanacearum_PSI07 0
Ralstonia_solanacearum_CMR15 1
Ralstonia_solanacearum_GMI1000 0
Leisingera_methylohalidivorans_DSM_14336 0
Sinorhizobium_fredii_USDA_257 0
Sinorhizobium_fredii_HH103 0
Bradyrhizobium_japonicum_USDA_6 0
Vibrio_nigripulchritudo_VibrioScope 0
Xanthomonas_citri_subsp._citri_Aw12879 0
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1
Xanthomonas_axonopodis_Xac29-1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 0
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 0
Xanthomonas_oryzae_pv._oryzae_KACC_10331 0
Xanthomonas_campestris_pv._campestris_str._8004 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1
Yersinia_pseudotuberculosis_PB1/+ 1
Yersinia_pseudotuberculosis_YPIII 1
Yersinia_pseudotuberculosis_IP_32953 0
Yersinia_pestis_biovar_Microtus_str._91001 1
Yersinia_pestis_A1122 1
Yersinia_pestis_Z176003 2
Yersinia_pestis_D182038 2
Yersinia_pestis_D106004 2
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 1
Yersinia_pestis_Nepal516 1
Yersinia_pestis_Antiqua 3
Yersinia_pestis_Angola 1
Yersinia_pestis_CO92 1
Yersinia_pestis_KIM10+ 1
Shigella_sonnei_53G 4
Shigella_flexneri_2002017 5
Shigella_flexneri_2a_str._2457T 2
Shigella_flexneri_2a_str._301 3
Shigella_dysenteriae_1617 3
Shigella_boydii_Sb227 3
Salmonella_bongori_N268-08 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 2
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 0
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 0
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 0
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 0
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 0
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 0
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 0
Salmonella_enterica_serovar_Bovismorbificans_genomics 2
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 0
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 0
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 0
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 0
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 0
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1
Escherichia_coli_E24377A 1
Escherichia_coli_LY180 0
Escherichia_coli_O7:K1_str._CE10 0
Escherichia_coli_O104:H4_str._2009EL-2050 1
Escherichia_coli_O104:H4_str._2009EL-2071 1
Escherichia_coli_O104:H4_str._2011C-3493 1
Escherichia_coli_042 0
Escherichia_coli_Xuzhou21 1
Escherichia_coli_KO11FL 0
Escherichia_coli_KO11FL 0
Escherichia_coli_IAI39 0
Escherichia_coli_UMN026 0
Escherichia_coli_55989 1
Escherichia_coli_IAI1 1
Escherichia_coli_W 0
Escherichia_coli_W 0
Escherichia_coli_ATCC_8739 1
Escherichia_coli_SMS-3-5 0
Escherichia_coli_SE11 0
Escherichia_coli_O103:H2_str._12009 4
Escherichia_coli_HS 0
Escherichia_coli_O55:H7_str._RM12579 0
Escherichia_coli_O55:H7_str._CB9615 0
Escherichia_coli_O26:H11_str._11368 3
Escherichia_coli_O111:H-_str._11128 2
Escherichia_coli_O157:H7_str._TW14359 1
Escherichia_coli_O157:H7_str._EC4115 1
Escherichia_coli_O157:H7_str._Sakai 1
Escherichia_coli_O157:H7_str._EDL933 1
Pseudomonas_monteilii_SB3101 0
Pseudomonas_monteilii_SB3078 0
Pseudomonas_putida_H8234 0
Pseudomonas_putida_HB3267 0
Pseudomonas_putida_NBRC_14164 0
Pseudomonas_putida_DOT-T1E 0
Pseudomonas_putida_S16 0
Pseudomonas_putida_BIRD-1 0
Pseudomonas_putida_W619 0
Pseudomonas_putida_ND6 0
Pseudomonas_putida_KT2440 0
Pseudomonas_putida_GB-1 0
Pseudomonas_poae_RE*1-1-14 0
Pseudomonas_fluorescens_F113 0
Pseudomonas_fluorescens_A506 0
Pseudomonas_fluorescens_R124 0
Pseudomonas_fluorescens_Pf0-1 0
Methanolobus_psychrophilus_R15 0
Methanosarcina_mazei_Tuc01 0
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 0
Methanococcus_maripaludis_C7 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   38
Pan_troglodytes_69_2.1.4   (Chimpanzee)   36
Gorilla_gorilla_69_3.1   (Western gorilla)   39
Pongo_abelii_69_2   (Sumatran orangutan)   34
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   37
Macaca_mulatta_69_1   (Rhesus monkey)   30
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   40
Otolemur_garnettii_69_3   (Small-eared galago)   39
Microcebus_murinus_69_1   (Gray mouse lemur)   23
Rattus_norvegicus_69_3.4   (Norway rat)   38
Mus_musculus_69_38   (House mouse)   40
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   28
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   37
Cavia_porcellus_69_3   (Domestic guinea pig)   36
Oryctolagus_cuniculus_69_2   (Rabbit)   31
Ochotona_princeps_69   (American pika)   27
Tupaia_belangeri_69   (Northern tree shrew)   25
Sus_scrofa_69_10.2   (Pig)   33
Bos_taurus_69_3.1   (Cattle)   36
Vicugna_pacos_69_1   (Alpaca)   20
Tursiops_truncatus_69_1   (Bottlenose dolphin)   29
Mustela_putorius_furo_69_1.0   (Domestic ferret)   35
Ailuropoda_melanoleuca_69_1   (Giant panda)   37
Canis_familiaris_69_3.1   (Dog)   31
Felis_catus_69   (Domestic cat)   27
Equus_caballus_69_2   (Horse)   34
Myotis_lucifugus_69_2.0   (Little brown bat)   35
Pteropus_vampyrus_69_1   (Large flying fox)   29
Sorex_araneus_69_1   (European shrew)   27
Erinaceus_europaeus_69   (Western European hedgehog)   18
Procavia_capensis_69_1   (Cape rock hyrax)   24
Loxodonta_africana_69_3   (African savanna elephant)   29
Echinops_telfairi_69   (Small Madagascar hedgehog)   30
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   27
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   20
Macropus_eugenii_69_1.0   (Tammar wallaby)   24
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   37
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   27
Ornithorhynchus_anatinus_69_5   (Platypus)   26
Petromyzon_marinus_69_7.0   (Sea lamprey)   8
Meleagris_gallopavo_69_2   (Turkey)   24
Gallus_gallus_69_2   (Chicken)   22
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   24
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   36
Anolis_carolinensis_69_2.0   (Green anole)   30
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   32
Latimeria_chalumnae_69_1   (Coelacanth)   35
Gadus_morhua_69_1   (Atlantic cod)   23
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   33
Takifugu_rubripes_69_4   (Torafugu)   36
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   29
Oryzias_latipes_69_1   (Japanese medaka)   30
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   40
Oreochromis_niloticus_69_1.0   (Nile tilapia)   38
Danio_rerio_69_9   (Zebrafish)   38
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   16
Ciona_intestinalis_69   (Vase tunicate)   17
Drosophila_melanogaster_69_5   (Fruit fly)   13
Caenorhabditis_elegans_69_215   (Roundworm)   10
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   2
Arabidopsis_thaliana_10   (Thale cress)   8

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   90
Homo_sapiens__(NCBI_version)   (Human)   52
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   39
Heliconius_numata__(Incomplete) 3
Loa_loa_v3.3_(Request)   (Eye worm)   5
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   7
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   6
Encephalitozoon_intestinalis__(endoparasite) 1
Encephalitozoon_cuniculi_(endoparasite) 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2
Lotus_japonicus__(Early_assembly) 44
Malus_x_domestica_(Duplicate)   (Apple)   164
Ricinus_communis__(Early_assembly)   (Castor bean)   14
Nicotiana_benthamiana_0.4.4_(Early_draft) 52
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   22
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   19
Phoenix_dactylifera__(Early_draft)   (Date palm)   15
Acholeplasma_laidlawii_PG-8A_(duplicate) 0
NCBI_plasmid_sequences_(Plasmids) 22
Core_Eukaryotic_Genes_458_(CEGMA) 2
TargetDB__(Targets) 70
Protozoadb_2010_08_(Protozoadb) 543
STRING_v9.0.5_(STRING) 2238
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 137
Uniprot_2018_03_genome 64110
NCBI_2017_08_genome 37099
Protein_Data_Bank_(all_PDB_sequenc) 89
NCBI_viral_sequences_(Viral) 17
PDB_chains_(SCOP_1.75)_(PDB) 0
UniProt__viral_sequences_(Viral) 10

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.