SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 52087,46966,46966,_gap_,46966,46966,_gap_,46966,_gap_,46966,_gap_,48065,50729,50044,_gap_,48065,50729,_gap_,50044,_gap_,49265,56112 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52087 - CRAL/TRIO domain
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
48065 - DBL homology domain (DH-domain)
50729 - PH domain-like
50044 - SH3-domain
48065 - DBL homology domain (DH-domain)
50729 - PH domain-like
50044 - SH3-domain
49265 - Fibronectin type III
56112 - Protein kinase-like (PK-like)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   2
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Otolemur_garnettii_76_3   (Small-eared galago)   1
Cavia_porcellus_76_3   (Domestic guinea pig)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Otolemur_garnettii_69_3   (Small-eared galago)   1
Cavia_porcellus_69_3   (Domestic guinea pig)   1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2
Homo_sapiens__(NCBI_version)   (Human)   1
STRING_v9.0.5_(STRING) 2
Uniprot_2018_03_genome 12488
NCBI_2017_08_genome 127

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