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  Home > SCOP hierarchy > Domain combination - 52087,46966,46966,_gap_,46966,46966,_gap_,46966,_gap_,46966,_gap_,48065,50729,_gap_

Domain combinations for 52087,46966,46966,_gap_,46966,46966,_gap_,46966,_gap_,46966,_gap_,48065,50729,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52087 - CRAL/TRIO domain
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
46966 - Spectrin repeat
48065 - DBL homology domain (DH-domain)
50729 - PH domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   2
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Macaca_mulatta_76_1   (Rhesus monkey)   2
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   2
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Felis_catus_76_6.2   (Domestic cat)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Lepisosteus_oculatus_76   (Spotted gar)   0
Takifugu_rubripes_76_4   (Torafugu)   1
Poecilia_formosa_76   (Amazon molly)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1

Longest transcript per gene
Genome     Number
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Macaca_mulatta_69_1   (Rhesus monkey)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2
Homo_sapiens__(NCBI_version)   (Human)   1
STRING_v9.0.5_(STRING) 2
Uniprot_2018_03_genome 3024
NCBI_2017_08_genome 153

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.