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Home > SCOP hierarchy > Domain combination - 52087,_gap_,46966,46966,_gap_,48065,50729

Domain combinations for 52087,_gap_,46966,46966,_gap_,48065,50729 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

Phylogenetic distribution

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Tetraodon_nigroviridis_76_8 (Spotted green pufferfish) 0

Takifugu_rubripes_76_4 (Torafugu) 2

Gasterosteus_aculeatus_76_1 (Three-spined stickleback) 0

Oryzias_latipes_76_1 (Japanese medaka) 2

Poecilia_formosa_76 (Amazon molly) 0

Oreochromis_niloticus_76_1.0 (Nile tilapia) 0

Astyanax_mexicanus_76 (Mexican tetra) 1

Danio_rerio_76_9 (Zebrafish) 0

Ciona_savignyi_76_2.0 (Pacific transparent sea squirt) 1

Ciona_intestinalis_76 (Vase tunicate) 1

Strigamia_maritima_22 0

Nematostella_vectensis_1.0 (Starlet sea anemone) 1

Longest transcript per gene
Genome Number

Tetraodon_nigroviridis_69_8 (Spotted green pufferfish) 0

Takifugu_rubripes_69_4 (Torafugu) 0

Gasterosteus_aculeatus_69_1 (Three-spined stickleback) 0

Oryzias_latipes_69_1 (Japanese medaka) 1

Oreochromis_niloticus_69_1.0 (Nile tilapia) 0

Danio_rerio_69_9 (Zebrafish) 0

Ciona_intestinalis_69 (Vase tunicate) 1

Others
Genome Number

STRING_v9.0.5_(STRING) 2

Uniprot_2018_03_genome 286

NCBI_2017_08_genome 3

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