SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 52172,47384,55874,52172 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52172 - CheY-like
47384 - Homodimeric domain of signal transducing histidine kinase
55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
52172 - CheY-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Acaryochloris_marina_MBIC11017 0
Microcoleus_sp._PCC_7113 1
Nostoc_punctiforme_PCC_73102 0
Paenibacillus_terrae_HPL-003 1
Paenibacillus_polymyxa_M1 1
Flexibacter_litoralis_DSM_6794 0
Spirosoma_linguale_DSM_74 0
Pedobacter_heparinus_DSM_2366 1
Isosphaera_pallida_ATCC_43644 0
Planctomyces_brasiliensis_DSM_5305 0
Opitutus_terrae_PB90-1 0
Treponema_primitia_ZAS-2 0
Candidatus_Solibacter_usitatus_Ellin6076 1
Candidatus_Nitrospira_defluvii 1
Desulfurivibrio_alkaliphilus_AHT2 1
Desulfatibacillum_alkenivorans_AK-01 0
Desulfomicrobium_baculatum_DSM_4028 1
Desulfovibrio_piezophilus 1
Desulfovibrio_alaskensis_G20 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 0
Desulfovibrio_salexigens_DSM_2638 0
Desulfovibrio_africanus_str._Walvis_Bay 1
Geobacter_sp._M21 1
Geobacter_bemidjiensis_Bem 1
Haliangium_ochraceum_DSM_14365 1
Anaeromyxobacter_dehalogenans_2CP-1 1
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 2
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Azoarcus_sp._KH32C 0
Rubrivivax_gelatinosus_IL144 1
Burkholderia_phymatum_STM815 1
Ralstonia_eutropha_JMP134 0
Burkholderia_glumae_BGR1 0
Ramlibacter_tataouinensis_TTB310 1
Herminiimonas_arsenicoxydans 0
Achromobacter_xylosoxidans 0
Magnetococcus_marinus_MC-1 1
Asticcacaulis_excentricus_CB_48 1
Magnetospirillum_magneticum_AMB-1 0
Rhodospirillum_centenum_SW 1
Methylobacterium_sp._4-46 0
Methylobacterium_populi_BJ001 1
Methylobacterium_radiotolerans_JCM_2831 1
Sinorhizobium_medicae_WSM419 1
Rhizobium_etli_CIAT_652 1
Rhizobium_leguminosarum_bv._viciae_3841 1
Methylocella_silvestris_BL2 1
Oligotropha_carboxidovorans_OM4 1
Bradyrhizobium_sp._ORS_278 1
Saccharophagus_degradans_2-40 0
Teredinibacter_turnerae_T7901 0
Pseudoalteromonas_sp._SM9913 0
Pseudoalteromonas_atlantica_T6c 0
Pseudoalteromonas_haloplanktis_TAC125 0
Glaciecola_sp._4H-3-7+YE-5 0
Alteromonas_sp._SN2 0
Alteromonas_macleodii_str._'Deep_ecotype' 0
Hahella_chejuensis_KCTC_2396 0
Rhodanobacter_denitrificans 1
Frateuria_aurantia_DSM_6220 0
Pseudoxanthomonas_spadix_BD-a59 1
Pseudoxanthomonas_suwonensis_11-1 1
Stenotrophomonas_maltophilia_K279a 1
Xylella_fastidiosa_M23 1
Xanthomonas_axonopodis_pv._citri_str._306 1
Xanthomonas_albilineans_GPE_PC73 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 1
Xanthomonas_campestris_pv._campestris_str._B100 1
Thiocystis_violascens_DSM_198 1
Pseudomonas_sp._TKP 1
Pseudomonas_sp._UW4 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_stutzeri_A1501 0
Pseudomonas_protegens_Pf-5 1
Pseudomonas_fluorescens_SBW25 1
Pseudomonas_sp._VLB120 1

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Strains
Genome     Number
Chamaesiphon_minutus_PCC_6605 0
Oscillatoria_nigro-viridis_PCC_7112 0
Oscillatoria_acuminata_PCC_6304 0
Paenibacillus_sp._Y412MC10 1
Paenibacillus_polymyxa_CR1 1
Paenibacillus_polymyxa_SC2 1
Paenibacillus_polymyxa_E681 1
Singulisphaera_acidiphila_DSM_18658 1
Desulfocapsa_sulfexigens_DSM_10523 1
Desulfobacula_toluolica_Tol2 2
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 0
Desulfovibrio_vulgaris_RCH1 0
Desulfovibrio_vulgaris_str._'Miyazaki_F' 0
Desulfovibrio_vulgaris_str._Hildenborough 0
Desulfovibrio_desulfuricans_ND132 1
Geobacter_sp._M18 1
Anaeromyxobacter_sp._K 1
Burkholderia_sp._YI23 1
Variovorax_paradoxus_EPS 2
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 0
Magnetospirillum_gryphiswaldense_MSR-1_v2 0
Rhizobium_etli_CFN_42 1
Rhizobium_etli_bv._mimosae_str._Mim1 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1
Oligotropha_carboxidovorans_OM5 1
Oligotropha_carboxidovorans_OM5 1
Bradyrhizobium_sp._S23321 1
Bradyrhizobium_sp._BTAi1 1
Bradyrhizobium_oligotrophicum_S58 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 0
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U8' 0
Alteromonas_macleodii_str._'Ionian_Sea_U7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U4' 0
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 0
Alteromonas_macleodii_str._'English_Channel_615' 0
Alteromonas_macleodii_AltDE1 0
Alteromonas_macleodii_str._'English_Channel_673' 0
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 0
Alteromonas_macleodii_str._'Black_Sea_11' 0
Alteromonas_macleodii_ATCC_27126 0
Thalassolituus_oleivorans_MIL-1 0
Stenotrophomonas_maltophilia_D457 1
Stenotrophomonas_maltophilia_JV3 1
Stenotrophomonas_maltophilia_R551-3 1
Xylella_fastidiosa_subsp._fastidiosa_GB514 1
Xylella_fastidiosa_Temecula1 1
Xylella_fastidiosa_9a5c 1
Xanthomonas_citri_subsp._citri_Aw12879 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1
Xanthomonas_axonopodis_Xac29-1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1
Xanthomonas_campestris_pv._raphani_756C 1
Xanthomonas_campestris_pv._campestris_str._8004 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1
Pseudomonas_stutzeri_CCUG_29243 0
Pseudomonas_stutzeri_RCH2 0
Pseudomonas_putida_H8234 1
Pseudomonas_putida_W619 0
Pseudomonas_putida_GB-1 1
Pseudomonas_protegens_CHA0 1
Pseudomonas_poae_RE*1-1-14 1
Pseudomonas_fluorescens_F113 1
Pseudomonas_fluorescens_A506 1
Pseudomonas_fluorescens_R124 1
Pseudomonas_fluorescens_Pf0-1 1

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 7
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 43
Uniprot_2018_03_genome 11367
NCBI_2017_08_genome 2309

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