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  Home > SCOP hierarchy > Domain combination - 52172,55785,47384,55874,52172

Domain combinations for 52172,55785,47384,55874,52172 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52172 - CheY-like
55785 - PYP-like sensor domain (PAS domain)
47384 - Homodimeric domain of signal transducing histidine kinase
55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
52172 - CheY-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Microbotryum_violaceum_22 0
Sphaerobolus_stellatus_v1.0 1
Schizophyllum_commune_ 0
Punctularia_strigosozonata_v1.0 0
Sebacina_vermifera_MAFF_305830_v1.0 0
Spizellomyces_punctatus_DAOM_BR117_ 0
Synechococcus_sp._PCC_7502 1
Microcoleus_sp._PCC_7113 3
Gloeocapsa_sp._PCC_7428 1
Gloeobacter_violaceus_PCC_7421 2
Rivularia_sp._PCC_7116 2
Calothrix_sp._PCC_7507 2
Anabaena_variabilis_ATCC_29413 2
Nostoc_sp._PCC_7107 2
Nostoc_punctiforme_PCC_73102 3
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 2
Actinoplanes_missouriensis_431 2
Roseiflexus_sp._RS-1 1
Roseiflexus_castenholzii_DSM_13941 1
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aggregans_DSM_9485 1
Chloroflexus_aurantiacus_J-10-fl 1
Melioribacter_roseus_P3M 1
Chloroherpeton_thalassium_ATCC_35110 0
Rhodothermus_marinus_DSM_4252 1
Dyadobacter_fermentans_DSM_18053 2
Bacteroides_sp._CF50 1
Pedobacter_saltans_DSM_12145 1
Planctomyces_brasiliensis_DSM_5305 1
Opitutus_terrae_PB90-1 0
Turneriella_parva_DSM_21527 1
Spirochaeta_smaragdinae_DSM_11293 2
Spirochaeta_caldaria_DSM_7334 1
Treponema_azotonutricium_ZAS-9 1
Spirochaeta_thermophila_DSM_6192 1
Calditerrivibrio_nitroreducens_DSM_19672 1
Flexistipes_sinusarabici_DSM_4947 1
Candidatus_Chloracidobacterium_thermophilum_B 1
Candidatus_Methylomirabilis_oxyfera 0
Desulfurivibrio_alkaliphilus_AHT2 1
Desulfobulbus_propionicus_DSM_2032 2
Desulfatibacillum_alkenivorans_AK-01 1
Desulfobacterium_autotrophicum_HRM2 2
Desulfovibrio_piezophilus 0
Desulfovibrio_aespoeensis_Aspo-2 0
Desulfovibrio_magneticus_RS-1 0
Desulfovibrio_salexigens_DSM_2638 0
Desulfovibrio_africanus_str._Walvis_Bay 1
Geobacter_daltonii_FRC-32 2
Geobacter_sp._M21 2
Geobacter_bemidjiensis_Bem 2
Geobacter_metallireducens_GS-15 1
Pelobacter_propionicus_DSM_2379 1
Haliangium_ochraceum_DSM_14365 1
Sorangium_cellulosum_'So_ce_56' 1
Anaeromyxobacter_sp._Fw109-5 1
Anaeromyxobacter_dehalogenans_2CP-1 1
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 0
Dechloromonas_aromatica_RCB 0
Azoarcus_sp._KH32C 1
Rubrivivax_gelatinosus_IL144 0
Burkholderia_rhizoxinica_HKI_454 1
Burkholderia_phytofirmans_PsJN 1
Burkholderia_phymatum_STM815 1
Burkholderia_xenovorans_LB400 1
Ralstonia_eutropha_JMP134 2
Cupriavidus_taiwanensis_LMG_19424 0
Cupriavidus_necator_N-1 1
Ralstonia_eutropha_H16 1
Ralstonia_pickettii_12D 1
Burkholderia_sp._RPE64 2
Burkholderia_sp._CCGE1002 2
Burkholderia_gladioli_BSR3 0
Burkholderia_glumae_BGR1 0
Ramlibacter_tataouinensis_TTB310 2
Delftia_sp._Cs1-4 1
Delftia_acidovorans_SPH-1 1
Polaromonas_sp._JS666 0
Acidovorax_citrulli_AAC00-1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Magnetococcus_marinus_MC-1 1
Caulobacter_sp._K31 0
Phenylobacterium_zucineum_HLK1 1
Novosphingobium_aromaticivorans_DSM_12444 1
Sphingobium_japonicum_UT26S 1
Azospirillum_lipoferum_4B 0
Azospirillum_sp._B510 0
Azospirillum_brasilense_Sp245 0
Gluconacetobacter_xylinus_NBRC_3288 1
Gluconacetobacter_diazotrophicus_PAl_5 1
Gluconobacter_oxydans_621H 0
Acetobacter_pasteurianus_IFO_3283-01 1
Methylobacterium_chloromethanicum_CM4 2
Methylobacterium_extorquens_AM1 2
Methylobacterium_sp._4-46 1
Methylobacterium_populi_BJ001 2
Methylobacterium_nodulans_ORS_2060 0
Methylobacterium_radiotolerans_JCM_2831 1
Agrobacterium_tumefaciens_str._C58 1
Mesorhizobium_loti_MAFF303099 1
Bradyrhizobium_sp._ORS_278 0
Pseudoxanthomonas_suwonensis_11-1 1
Xanthomonas_axonopodis_pv._citri_str._306 1
Xanthomonas_campestris_pv._campestris_str._B100 1
Allochromatium_vinosum_DSM_180 0
Pseudomonas_syringae_pv._tomato_str._DC3000 1
Pseudomonas_stutzeri_A1501 1
Pseudomonas_fulva_12-X 1

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Strains
Genome     Number
Chroococcidiopsis_thermalis_PCC_7203 2
Chamaesiphon_minutus_PCC_6605 1
Crinalium_epipsammum_PCC_9333 5
Oscillatoria_nigro-viridis_PCC_7112 1
Cyanothece_sp._PCC_7822 2
Cyanothece_sp._PCC_7425 2
Stanieria_cyanosphaera_PCC_7437 0
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Cylindrospermum_stagnale_PCC_7417 1
Anabaena_cylindrica_PCC_7122 1
Frankia_sp._CcI3 1
Rhodothermus_marinus_SG0.5JP17-172 1
Singulisphaera_acidiphila_DSM_18658 1
Spirochaeta_thermophila_DSM_6578 1
Desulfobacula_toluolica_Tol2 2
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 0
Desulfovibrio_desulfuricans_ND132 0
Geobacter_sp._M18 3
Sorangium_cellulosum_So0157-2 0
Anaeromyxobacter_sp._K 1
Anaeromyxobacter_dehalogenans_2CP-C 1
Burkholderia_phenoliruptrix_BR3459a 1
Ralstonia_pickettii_12J 1
Burkholderia_sp._YI23 2
Burkholderia_sp._CCGE1003 1
Burkholderia_sp._CCGE1001 1
Gluconacetobacter_diazotrophicus_PAl_5 1
Gluconobacter_oxydans_H24 1
Acetobacter_pasteurianus_386B 1
Acetobacter_pasteurianus_IFO_3283-12 1
Acetobacter_pasteurianus_IFO_3283-01-42C 1
Acetobacter_pasteurianus_IFO_3283-32 1
Acetobacter_pasteurianus_IFO_3283-26 1
Acetobacter_pasteurianus_IFO_3283-22 1
Acetobacter_pasteurianus_IFO_3283-07 1
Acetobacter_pasteurianus_IFO_3283-03 1
Methylobacterium_extorquens_DM4 2
Methylobacterium_extorquens_PA1 2
Mesorhizobium_australicum_WSM2073 1
Bradyrhizobium_sp._BTAi1 0
Bradyrhizobium_oligotrophicum_S58 0
Xanthomonas_citri_subsp._citri_Aw12879 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1
Xanthomonas_axonopodis_Xac29-1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1
Xanthomonas_campestris_pv._raphani_756C 1
Xanthomonas_campestris_pv._campestris_str._8004 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1
Pseudomonas_syringae_pv._syringae_B728a 1
Pseudomonas_stutzeri_CCUG_29243 1
Pseudomonas_stutzeri_DSM_10701 1
Pseudomonas_stutzeri_DSM_4166 1
Pseudomonas_stutzeri_RCH2 1
Pseudomonas_putida_H8234 1
Pseudomonas_putida_NBRC_14164 1
Pseudomonas_poae_RE*1-1-14 1
Pseudomonas_fluorescens_R124 1
Pseudomonas_fluorescens_Pf0-1 1

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Others
Genome     Number
NCBI_plasmid_sequences_(Plasmids) 2
TargetDB__(Targets) 4
STRING_v9.0.5_(STRING) 75
Uniprot_2018_03_genome 23520
NCBI_2017_08_genome 2350

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.