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  Home > SCOP hierarchy > Domain combination - 52540,_gap_,49562

Domain combinations for 52540,_gap_,49562 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52540 - P-loop containing nucleoside triphosphate hydrolases
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Trichinella_spiralis_22 0
Capsaspora_owczarzaki_ATCC_30864_ 0
Oryza_punctata_22 0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Porphyridium_purpureum_02_2012 0
Leishmania_mexicana_2.4 1
Leishmania_major_strain_Friedlin_ 1
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_cruzi_strain_CL_Brener 1
Aureococcus_anophagefferens_ 0
Symbiodinium_minutum_clade_B1_v1.2 0
Isosphaera_pallida_ATCC_43644 1

Strains
Genome     Number
Singulisphaera_acidiphila_DSM_18658 1

Others
Genome     Number
TargetDB__(Targets) 1
Protozoadb_2010_08_(Protozoadb) 6
NCBI_2017_08_genome 12
Uniprot_2018_03_genome 114
STRING_v9.0.5_(STRING) 1

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.