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  Home > SCOP hierarchy > Domain combination - 52540,_gap_,82199

Domain combinations for 52540,_gap_,82199 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52540 - P-loop containing nucleoside triphosphate hydrolases
82199 - SET domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Macaca_mulatta_76_1   (Rhesus monkey)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   1
Sorex_araneus_76_1   (European shrew)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Drosophila_grimshawi_1.3 1
Strigamia_maritima_22 0
Aureococcus_anophagefferens_ 0
Symbiodinium_minutum_clade_B1_v1.2 1

Longest transcript per gene
Genome     Number
Macaca_mulatta_69_1   (Rhesus monkey)   1
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1
Canis_familiaris_69_3.1   (Dog)   1
Felis_catus_69   (Domestic cat)   0
Sorex_araneus_69_1   (European shrew)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 5
Uniprot_2018_03_genome 84
NCBI_2017_08_genome 33

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.