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  Home > SCOP hierarchy > Domain combination - 52799,_gap_

Domain combinations for 52799,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

52799 - (Phosphotyrosine protein) phosphatases II

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   25
Pan_troglodytes_76_2.1.4   (Chimpanzee)   8
Gorilla_gorilla_76_3.1   (Western gorilla)   12
Pongo_abelii_76_2   (Sumatran orangutan)   9
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   9
Papio_anubis_76   (Olive baboon)   10
Macaca_mulatta_76_1   (Rhesus monkey)   19
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   24
Otolemur_garnettii_76_3   (Small-eared galago)   7
Microcebus_murinus_76_1   (Gray mouse lemur)   7
Rattus_norvegicus_76_5.0   (Norway rat)   11
Mus_musculus_76_38   (House mouse)   15
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   8
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   16
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   8
Cavia_porcellus_76_3   (Domestic guinea pig)   8
Oryctolagus_cuniculus_76_2   (Rabbit)   9
Ochotona_princeps_76   (American pika)   8
Tupaia_belangeri_76   (Northern tree shrew)   4
Sus_scrofa_76_10.2   (Pig)   8
Bos_taurus_76_3.1   (Cattle)   8
Ovis_aries_76_3.1   (Sheep)   10
Vicugna_pacos_76_1   (Alpaca)   6
Tursiops_truncatus_76_1   (Bottlenose dolphin)   5
Mustela_putorius_furo_76_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_76_1   (Giant panda)   8
Canis_familiaris_76_3.1   (Dog)   9
Felis_catus_76_6.2   (Domestic cat)   7
Equus_caballus_76_2   (Horse)   9
Myotis_lucifugus_76_2.0   (Little brown bat)   10
Pteropus_vampyrus_76_1   (Large flying fox)   6
Sorex_araneus_76_1   (European shrew)   5
Erinaceus_europaeus_76   (Western European hedgehog)   5
Procavia_capensis_76_1   (Cape rock hyrax)   5
Loxodonta_africana_76_3   (African savanna elephant)   15
Echinops_telfairi_76   (Small Madagascar hedgehog)   6
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   9
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   9
Macropus_eugenii_76_1.0   (Tammar wallaby)   5
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   13
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   9
Ornithorhynchus_anatinus_76_5   (Platypus)   11
Saccoglossus_kowalevskii_v3.0 8
Petromyzon_marinus_76_7.0   (Sea lamprey)   4
Meleagris_gallopavo_76_2   (Turkey)   9
Gallus_gallus_76_4   (Chicken)   7
Anas_platyrhynchos_76_1.0   (Mallard)   6
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   6
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   9
Anolis_carolinensis_76_2.0   (Green anole)   9
Xenopus_laevis_   (African clawed frog)   15
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   11
Latimeria_chalumnae_76_1   (Coelacanth)   13
Lepisosteus_oculatus_76   (Spotted gar)   10
Gadus_morhua_76_1   (Atlantic cod)   9
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   9
Takifugu_rubripes_76_4   (Torafugu)   21
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   13
Oryzias_latipes_76_1   (Japanese medaka)   10
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   12
Poecilia_formosa_76   (Amazon molly)   10
Oreochromis_niloticus_76_1.0   (Nile tilapia)   14
Astyanax_mexicanus_76   (Mexican tetra)   12
Danio_rerio_76_9   (Zebrafish)   27
Oikopleura_dioica 11
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   9
Ciona_intestinalis_76   (Vase tunicate)   7
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   19
Adineta_vaga 36
Octopus_bimaculoides_280 11
Crassostrea_gigas_22   (Pacific oyster)   6
Lottia_gigantea_   (Owl limpet)   7
Helobdella_robusta_ 5
Capitella_sp._I_ 15
Danaus_plexippus_OGS1.0   (Monarch butterfly)   6
Heliconius_melpomene_   (Postman butterfly)   3
Bombyx_mori_   (Domestic silkworm)   7
Nasonia_vitripennis_   (Jewel wasp)   2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   4
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3
Linepithema_humile_v1.1   (Argentine ant)   4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   5
Solenopsis_invicta_v.2.2.3   (Red fire ant)   5
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   4
Atta_cephalotes_v1.1 5
Camponotus_floridanus_v3.3   (Florida carpenter ant)   4
Lucilia_cuprina   (Australian sheep blowfly)   7
Drosophila_grimshawi_1.3 6
Drosophila_willistoni_1.3 5
Drosophila_pseudoobscura_2.13 7
Drosophila_persimilis_1.3 7
Drosophila_suzukii 5
Drosophila_yakuba_1.3 5
Drosophila_simulans_1.3 4
Drosophila_sechellia_1.3 7
Drosophila_melanogaster_76_5   (Fruit fly)   13
Drosophila_erecta_1.3 5
Drosophila_ananassae_1.3 4
Drosophila_virilis_1.2 5
Drosophila_mojavensis_1.3 5
Megaselia_scalaris_22 5
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   8
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   4
Anopheles_darlingi_22   (American malaria mosquito)   4
Anopheles_gambiae_49_3j   (African malaria mosquito)   5
Tribolium_castaneum_3.0   (Red flour beetle)   4
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   4
Acyrthosiphon_pisum_   (Pea aphid)   2
Rhodnius_prolixus_22 4
Daphnia_pulex_   (Common water flea)   6
Strigamia_maritima_22 7
Sarcoptes_scabiei 5
Tetranychus_urticae_   (Two-spotted spider mite)   7
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3
Pristionchus_pacificus_ 15
Meloidogyne_incognita_   (Southern root-knot nematode)   12
Meloidogyne_hapla_ 9
Onchocerca_volvulus_22 12
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   20
Caenorhabditis_japonica_ 10
Caenorhabditis_brenneri_ 19
Caenorhabditis_remanei_ 17
Caenorhabditis_elegans_76_235   (Roundworm)   20
Caenorhabditis_briggsae_2 9
Trichinella_spiralis_22 6
Hymenolepis_microstoma_ 8
Echinococcus_multilocularis_ 7
Echinococcus_granulosus_ 5
Taenia_solium_   (Pork tapeworm)   7
Schistosoma_mansoni_ 8
Mnemiopsis_leidyi   (Sea walnut)   8
Thelohanellus_kitauei 4
Acropora_digitifera_v1.0 10
Nematostella_vectensis_1.0   (Starlet sea anemone)   5
Hydra_vulgaris 11
Amphimedon_queenslandica 7
Trichoplax_adhaerens_ 3
Proterospongia_sp._ATCC_50818_ 6
Monosiga_brevicollis_ 7
Sphaeroforma_arctica_JP610_ 5
Capsaspora_owczarzaki_ATCC_30864_ 6
Conidiobolus_coronatus_NRRL28638_v1.0 0
Mortierella_verticillata_NRRL_6337_ 4
Phycomyces_blakesleeanus_ 2
Rhizopus_oryzae_RA_99-880_ 0
Mucor_circinelloides_ 3
Rhizomucor_miehei_CAU432_ 3
Malassezia_globosa_CBS_7966_ 4
Sporisorium_reilianum_22 3
Ustilago_maydis_ 3
Mixia_osmundae_IAM_14324_v1.0 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2
Melampsora_laricis-populina_ 2
Rhodotorula_graminis_WP1_v1.0 2
Sporobolomyces_roseus_IAM_13481_ 3
Microbotryum_violaceum_22 3
Wallemia_sebi_v1.0 3
Sphaerobolus_stellatus_v1.0 5
Piloderma_croceum_F_1598_v1.0 2
Serpula_lacrymans_var._lacrymans_S7.9_ 3
Coniophora_puteana 4
Hydnomerulius_pinastri_v2.0 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 3
Pisolithus_microcarpus_441_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 2
Scleroderma_citrinum_Foug_A_v1.0 2
Coprinopsis_cinerea_okayama7_130_v3 3
Pleurotus_ostreatus_   (Oyster mushroom)   2
Amanita_thiersii_Skay4041_v1.0 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2
Galerina_marginata_v1.0 2
Hebeloma_cylindrosporum_h7_v2.0 2
Laccaria_bicolor_S238N-H82_ 2
Agaricus_bisporus_var._bisporus_ 3
Schizophyllum_commune_ 3
Stereum_hirsutum_FP-91666_SS1__v1.0 4
Heterobasidion_annosum_ 3
Gloeophyllum_trabeumv1.0 3
Punctularia_strigosozonata_v1.0 2
Sebacina_vermifera_MAFF_305830_v1.0 2
Fomitiporia_mediterranea_v1.0 3
Tulasnella_calospora_AL13/4D_v1.0 2
Postia_placenta_ 4
Wolfiporia_cocos_MD-104_SS10__v1.0 2
Fomitopsis_pinicolav1.0 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3
Phanerochaete_chrysosporium_RP-78_2.1 2
Dichomitus_squalens 3
Trametes_versicolor_v1.0 3
Tremella_mesenterica_   (Witches' butter)   4
Daldinia_eschscholzii_EC12_v1.0 2
Apiospora_montagnei_NRRL_25634_v1.0 4
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 3
Podospora_anserina_ 1
Sporotrichum_thermophile_ATCC_42464_ 2
Thielavia_terrestris_NRRL_8126_ 2
Chaetomium_globosum_CBS_148.51_ 1
Neurospora_tetrasperma_ 4
Neurospora_discreta_FGSC_8579_ 4
Neurospora_crassa_OR74A_ 2
Cryphonectria_parasitica_   (Chestnut blight fungus)   2
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 2
Acremonium_alcalophilumv_1.0 3
Glomerella_graminicola_22 2
Fusarium_graminearum_ 2
Nectria_haematococca_mpVI_ 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3
Fusarium_verticillioides_7600_ 3
Trichoderma_asperellum_CBS_433.97_v1.0 2
Trichoderma_atroviride_ 2
Trichoderma_citrinoviride_v1.0 2
Trichoderma_reesei_1.2 2
Trichoderma_virens_Gv29-8_ 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2
Trichoderma_harzianum_CBS_226.95_v1.0 2
Amorphotheca_resinae_v1.0   (Creosote fungus)   3
Botrytis_cinerea_B05.10_ 2
Sclerotinia_sclerotiorum_ 3
Blumeria_graminis_22 4
Didymella_exigua_CBS_183.55_v1.0 2
Leptosphaeria_maculans_22 2
Setosphaeria_turcica_v1.0 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 2
Cochliobolus_victoriae_FI3_v1.0 2
Cochliobolus_carbonum_26-R-13_v1.0 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2
Alternaria_brassicicola_ 2
Cochliobolus_lunatus_m118_v2.0 2
Pyrenophora_teres_f._teres_22 2
Pyrenophora_tritici-repentis_ 1
Stagonospora_nodorum_ 2
Mycosphaerella_graminicola_IPO323_ 4
Zasmidium_cellare_ATCC_36951_v1.0 4
Dothistroma_septosporum 3
Septoria_musiva_v1.0 4
Mycosphaerella_fijiensis_CIRAD86_ 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3
Paracoccidioides_brasiliensis_Pb18_ 1
Coccidioides_posadasii_RMSCC_3488_ 3
Coccidioides_immitis_RS_ 2
Ajellomyces_dermatitidis_SLH14081_ 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2
Microsporum_canis_CBS_113480_ 2
Trichophyton_equinum_CBS_127.97_ 3
Trichophyton_verrucosum_HKI_0517_ 4
Arthroderma_benhamiae_CBS_112371_ 3
Trichophyton_tonsurans_CBS_112818_ 4
Trichophyton_rubrum_CBS_118892_ 3
Uncinocarpus_reesii_1704_ 2
Aspergillus_zonatus_v1.0 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 3
Penicillium_chrysogenum_v1.0 3
Aspergillus_acidus_v1.0 2
Aspergillus_fumigatus_Af293 2
Aspergillus_brasiliensis_v1.0 2
Aspergillus_nidulans_FGSC_A4_ 2
Aspergillus_sydowii_v1.0 2
Aspergillus_versicolor_v1.0 2
Aspergillus_glaucus 2
Aspergillus_carbonarius_ITEM_5010_ 2
Neosartorya_fischeri_NRRL_181_ 2
Aspergillus_terreus_NIH2624_ 1
Aspergillus_tubingensis_v1.0 2
Aspergillus_wentii_v1.0 1
Aspergillus_oryzae_RIB40_ 3
Aspergillus_niger_22 2
Aspergillus_niger_ATCC_1015_ 3
Aspergillus_flavus_NRRL3357_ 3
Aspergillus_clavatus_NRRL_1_ 2
Penicillium_marneffei_ATCC_18224_ 2
Tuber_melanosporum_Mel28_22 5
Tuber_melanosporum_Vittad_   (Perigord truffle)   6
Hansenula_polymorpha_v2.0 2
Dekkera_bruxellensis_CBS_2499_v2.0 2
Pichia_membranifaciensv1.0 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3
Candida_dubliniensis_CD36_ 3
Candida_tropicalis_MYA-3404_ 3
Candida_parapsilosis_ 3
Candida_albicans_SC5314 3
Lodderomyces_elongisporus_NRRL_YB-4239_ 4
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3
Pichia_stipitis_CBS_6054_ 3
Candida_guilliermondii_ATCC_6260_ 3
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3
Debaromyces_hansenii 3
Wickerhamomyces_anomalus 3
Pichia_pastoris_GS115_ 3
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 2
Candida_lusitaniae_ATCC_42720_ 4
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 2
Vanderwaltozyma_polyspora_DSM_70294_ 3
Candida_glabrata_CBS138 3
Kluyveromyces_thermotolerans_CBS_6340 4
Lachancea_kluyveri_ 2
Kluyveromyces_waltii 3
Ashbya_gossypii_ATCC_10895_ 3
Zygosaccharomyces_rouxii_ 3
Saccharomyces_mikatae_MIT 3
Saccharomyces_paradoxus_MIT 4
Saccharomyces_cerevisiae_76   (Baker's yeast)   3
Saccharomyces_bayanus_MIT 4
Kluyveromyces_lactis 3
Schizosaccharomyces_cryophilus_OY26_22 2
Schizosaccharomyces_octosporus_yFS286_ 2
Schizosaccharomyces_japonicus_yFS275_ 3
Schizosaccharomyces_pombe   (Fission yeast)   2
Catenaria_anguillulae_PL171_v1.0 1
Allomyces_macrogynus_ATCC_38327_ 14
Spizellomyces_punctatus_DAOM_BR117_ 4
Dictyostelium_discoideum 4
Dictyostelium_purpureum_ 2
Entamoeba_dispar_1.2 5
Entamoeba_invadens_1.2 6
Entamoeba_histolytica_1 5
Selaginella_moellendorffii_ 2
Pinus_taeda   (Loblolly pine)   5
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   3
Gossypium_raimondii_v221 7
Citrus_clementina_v165 10
Citrus_sinensis_v154   (Sweet orange)   16
Thellungiella_halophila_v173 4
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   3
Capsella_rubella_v183 4
Arabidopsis_lyrata_   (Lyrate rockcress)   4
Arabidopsis_thaliana_10   (Thale cress)   1
Carica_papaya_   (Papaya)   2
Medicago_truncatula_   (Barrel medic)   6
Phaseolus_vulgaris_v186   (French bean)   2
Glycine_max_v109   (Soybean)   9
Cucumis_sativus_v122   (Cucumber)   6
Fragaria_vesca_   (Wild strawberry)   3
Malus_domestica_v196   (Apple)   10
Prunus_persica_v139   (Peach)   6
Linum_usitatissimum_v200   (Flax)   4
Manihot_esculenta_v147   (Cassava)   2
Populus_trichocarpa_v156   (Black cottonwood)   6
Vitis_vinifera_   (Wine grape)   3
Mimulus_guttatus_v140   (Spotted monkey flower)   3
Solanum_lycopersicum_v.2.3   (Tomato)   4
Solanum_tuberosum_   (Potato)   3
Actinidia_chinensis_Hongyang_ 3
Aquilegia_coerulea_v195 5
Triticum_urartu_22 5
Triticum_aestivum_22   (Bread wheat)   9
Aegilops_tauschii_22 2
Brachypodium_distachyon_   (Stiff brome)   6
Oryza_barthii_22   (African wild rice)   10
Oryza_meridionalis_22 4
Oryza_glumaepatula_22 11
Oryza_glaberrima   (African rice)   5
Oryza_punctata_22 9
Oryza_nivara_22 9
Oryza_brachyantha_22   (Malo sina)   5
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   6
Oryza_sativa_v193   (Rice)   6
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   8
Panicum_virgatum_v202   (Switchgrass)   5
Setaria_italica_v164   (Foxtail millet)   4
Zea_mays_subsp._mays_   (Maize)   4
Zea_mays_v181   (Maize)   4
Sorghum_bicolor_   (Sorghum)   5
Musa_balbisiana   (Balbis banana)   6
Musa_acuminata_22   (Wild Malaysian banana)   4
Amborella_trichopoda_22 2
Physcomitrella_patens 4
Coccomyxa_subellipsoidea_sp._C-169_v2 2
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 2
Chlorella_vulgaris_ 3
Volvox_carteri_f._nagariensis_ 6
Volvox_carteri_v199 7
Chlamydomonas_reinhardtii_4.0 6
Ostreococcus_sp._RCC809_ 2
Ostreococcus_lucimarinus_CCE9901_ 1
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 1
Micromonas_sp._RCC299_ 1
Micromonas_pusilla_CCMP1545_v3.0 2
Cyanidioschyzon_merolae_strain_10D_22 2
Cyanidioschyzon_merolae 2
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 6
Bigelowiella_natans_CCMP2755_22 9
Giardia_lamblia_2.3 2
Cyanophora_paradoxa_ 3
Leishmania_mexicana_2.4 8
Leishmania_major_strain_Friedlin_ 8
Leishmania_infantum_JPCM5_2.4 8
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 7
Trypanosoma_vivax_ 5
Trypanosoma_cruzi_strain_CL_Brener 6
Trypanosoma_congolense_2.4 10
Trypanosoma_brucei_gambiense_v4.1 7
Trypanosoma_brucei_TREU927_v4.1 7
Ectocarpus_siliculosus 11
Aureococcus_anophagefferens_ 8
Albugo_laibachii_22 5
Pythium_iwayamai_DAOM_BR242034_22 9
Pythium_arrhenomanes_ATCC_12531_22 6
Pythium_ultimum_v1.7-2 6
Pythium_aphanidermatum_DAOM_BR444_22 6
Pythium_irregulare_DAOM_BR486_22 9
Pythium_vexans_DAOM_BR484_22 7
Phytophthora_ramorum_1.1   (Sudden oak death agent)   7
Phytophthora_sojae_1.1 7
Phytophthora_infestans_T30-4_ 7
Phytophthora_capsici_ 11
Hyaloperonospora_arabidopsidis_22 5
Phaeodactylum_tricornutumCCAP_1055/1 1
Fragilariopsis_cylindrus 2
Thalassiosira_pseudonana_CCMP1335 2
Perkinsus_marinus_ATCC_50983_ 7
Paramecium_tetraurelia_ 62
Tetrahymena_thermophila_SB210_1_ 20
Ichthyophthirius_multifiliis_strain_G5_ 8
Cryptosporidium_hominis 1
Cryptosporidium_muris 1
Cryptosporidium_parvum_Iowa_II 1
Neospora_caninum 2
Toxoplasma_gondii_VEG 1
Toxoplasma_gondii_ME49 2
Toxoplasma_gondii_GT1 2
Babesia_bovis_T2Bo_ 2
Theileria_parva__ 1
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 1
Plasmodium_chabaudi_ 0
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 9
Naegleria_gruberi_ 1
Trichomonas_vaginalis_ 2
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 4
Mycobacterium_sp._JLS 0
Mycobacterium_vanbaalenii_PYR-1 1
Microbacterium_testaceum_StLB037 1
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 1
Ruminococcus_albus_7 2
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 0
Clostridium_beijerinckii_NCIMB_8052 1
Clostridium_botulinum_A_str._ATCC_3502 1
Lactobacillus_brevis_ATCC_367 0
Simkania_negevensis_Z 1
Planctomyces_limnophilus_DSM_3776 1
Treponema_primitia_ZAS-2 0
Desulfobacca_acetoxidans_DSM_11109 1
Desulfobulbus_propionicus_DSM_2032 1
Desulfobacterium_autotrophicum_HRM2 1
Desulfohalobium_retbaense_DSM_5692 1
Desulfomicrobium_baculatum_DSM_4028 1
Desulfovibrio_piezophilus 1
Desulfovibrio_aespoeensis_Aspo-2 1
Desulfovibrio_magneticus_RS-1 1
Desulfovibrio_alaskensis_G20 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1
Desulfovibrio_salexigens_DSM_2638 1
Desulfovibrio_africanus_str._Walvis_Bay 1
Pelobacter_carbinolicus_DSM_2380 0
Stigmatella_aurantiaca_DW4/3-1 1
Rhodobacter_capsulatus_SB_1003 1
Nitrosococcus_halophilus_Nc4 0
Legionella_longbeachae_NSW150 0
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 0
Erwinia_tasmaniensis_Et1/99 0
Erwinia_sp._Ejp617 0
Erwinia_pyrifoliae_Ep1/96 0
Erwinia_amylovora_ATCC_49946 1
Hyperthermus_butylicus_DSM_5456 1
Thermogladius_cellulolyticus_1633 1
Ignicoccus_hospitalis_KIN4/I 1
Thermosphaera_aggregans_DSM_11486 1
Staphylothermus_hellenicus_DSM_12710 1
Staphylothermus_marinus_F1 1
Desulfurococcus_fermentans_DSM_16532 1
Desulfurococcus_kamchatkensis_1221n 1
Desulfurococcus_mucosus_DSM_2162 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   14
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   10
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   5
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   25
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   16
Cryptococcus_neoformans_var._grubii_H99_ 3
Cryptococcus_neoformans_B-3501A_ 3
Cryptococcus_neoformans_JEC21_ 3
Paracoccidioides_brasiliensis_Pb01_ 2
Paracoccidioides_brasiliensis_Pb03_ 2
Coccidioides_posadasii_str._Silveira_ 3
Coccidioides_immitis_RMSCC_3703_ 2
Coccidioides_immitis_RMSCC_2394_ 3
Coccidioides_immitis_H538.4_ 2
Ajellomyces_dermatitidis_ER-3_ 2
Histoplasma_capsulatum_H143 3
Histoplasma_capsulatum_H88 4
Histoplasma_capsulatum_G186AR 4
Aspergillus_fumigatus_A1163_ 1
Candida_albicans_WO-1_ 3
Saccharomyces_cerevisiae_UC5 3
Saccharomyces_cerevisiae_PW5 3
Saccharomyces_cerevisiae_FL100 3
Saccharomyces_cerevisiae_CLIB324 2
Saccharomyces_cerevisiae_CBS7960 3
Saccharomyces_cerevisiae_YJM269 4
Saccharomyces_cerevisiae_T7 3
Saccharomyces_cerevisiae_FostersB 4
Saccharomyces_cerevisiae_FostersO 2
Saccharomyces_cerevisiae_VL3 4
Saccharomyces_cerevisiae_Vin13 4
Saccharomyces_cerevisiae_LalvinQA23 2
Saccharomyces_cerevisiae_AWRI796 3
Saccharomyces_cerevisiae_Sigma1278b 3
Saccharomyces_cerevisiae_W303 4
Saccharomyces_cerevisiae_JAY291 3
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YPS163 3
Saccharomyces_cerevisiae_M22 2
Saccharomyces_cerevisiae_T73 0
Saccharomyces_cerevisiae_CLIB215 3
Saccharomyces_cerevisiae_Y10 3
Saccharomyces_cerevisiae_YJM789_ 3
Saccharomyces_cerevisiae_YJM789 3
Saccharomyces_cerevisiae_RM11-1a 3
Saccharomyces_cerevisiae_RM11-1a_ 3
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   3
Schizosaccharomyces_pombe_972h-_ 2
Batrachochytrium_dendrobatidis_JEL423_ 4
Batrachochytrium_dendrobatidis_JAM81_ 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   4
Hordeum_vulgare_22   (Domesticated barley)   4
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   7
Trypanosoma_brucei_Lister_427_v4.1 7
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 0
Clavibacter_michiganensis_subsp._sepedonicus 1
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1
Clostridium_saccharobutylicum_DSM_13864 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1
Clostridium_botulinum_H04402_065 1
Clostridium_botulinum_F_str._230613 1
Clostridium_botulinum_F_str._Langeland 1
Clostridium_botulinum_B1_str._Okra 1
Clostridium_botulinum_Ba4_str._657 1
Clostridium_botulinum_A2_str._Kyoto 1
Clostridium_botulinum_A3_str._Loch_Maree 1
Clostridium_botulinum_A_str._ATCC_19397 1
Lactobacillus_paracasei_subsp._paracasei_8700:2 0
Desulfocapsa_sulfexigens_DSM_10523 2
Desulfobacula_toluolica_Tol2 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Desulfovibrio_vulgaris_RCH1 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1
Desulfovibrio_vulgaris_str._Hildenborough 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1
Desulfovibrio_desulfuricans_ND132 1
Ralstonia_solanacearum_FQY_4 1
Proteus_mirabilis_BB2000 0
Erwinia_pyrifoliae_DSM_12163 0
Erwinia_amylovora_CFBP1430 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   7
Pan_troglodytes_69_2.1.4   (Chimpanzee)   7
Gorilla_gorilla_69_3.1   (Western gorilla)   10
Pongo_abelii_69_2   (Sumatran orangutan)   9
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   7
Macaca_mulatta_69_1   (Rhesus monkey)   11
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   7
Otolemur_garnettii_69_3   (Small-eared galago)   7
Microcebus_murinus_69_1   (Gray mouse lemur)   7
Rattus_norvegicus_69_3.4   (Norway rat)   9
Mus_musculus_69_38   (House mouse)   8
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   8
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   16
Cavia_porcellus_69_3   (Domestic guinea pig)   8
Oryctolagus_cuniculus_69_2   (Rabbit)   8
Ochotona_princeps_69   (American pika)   8
Tupaia_belangeri_69   (Northern tree shrew)   4
Sus_scrofa_69_10.2   (Pig)   8
Bos_taurus_69_3.1   (Cattle)   8
Vicugna_pacos_69_1   (Alpaca)   6
Tursiops_truncatus_69_1   (Bottlenose dolphin)   5
Mustela_putorius_furo_69_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_69_1   (Giant panda)   7
Canis_familiaris_69_3.1   (Dog)   6
Felis_catus_69   (Domestic cat)   6
Equus_caballus_69_2   (Horse)   9
Myotis_lucifugus_69_2.0   (Little brown bat)   8
Pteropus_vampyrus_69_1   (Large flying fox)   6
Sorex_araneus_69_1   (European shrew)   5
Erinaceus_europaeus_69   (Western European hedgehog)   5
Procavia_capensis_69_1   (Cape rock hyrax)   5
Loxodonta_africana_69_3   (African savanna elephant)   9
Echinops_telfairi_69   (Small Madagascar hedgehog)   6
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   7
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   9
Macropus_eugenii_69_1.0   (Tammar wallaby)   5
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   8
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   9
Ornithorhynchus_anatinus_69_5   (Platypus)   8
Petromyzon_marinus_69_7.0   (Sea lamprey)   4
Meleagris_gallopavo_69_2   (Turkey)   7
Gallus_gallus_69_2   (Chicken)   7
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   6
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   9
Anolis_carolinensis_69_2.0   (Green anole)   8
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   10
Latimeria_chalumnae_69_1   (Coelacanth)   10
Gadus_morhua_69_1   (Atlantic cod)   9
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   9
Takifugu_rubripes_69_4   (Torafugu)   8
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   9
Oryzias_latipes_69_1   (Japanese medaka)   9
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   12
Oreochromis_niloticus_69_1.0   (Nile tilapia)   10
Danio_rerio_69_9   (Zebrafish)   16
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   7
Ciona_intestinalis_69   (Vase tunicate)   7
Drosophila_melanogaster_69_5   (Fruit fly)   4
Caenorhabditis_elegans_69_215   (Roundworm)   13
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   3
Arabidopsis_thaliana_10   (Thale cress)   1

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   28
Homo_sapiens__(NCBI_version)   (Human)   18
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   7
Loa_loa_v3.3_(Request)   (Eye worm)   13
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   18
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   13
Moniliophthora_perniciosa_FA553__(Genome_survey) 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1
Lotus_japonicus__(Early_assembly) 1
Malus_x_domestica_(Duplicate)   (Apple)   10
Ricinus_communis__(Early_assembly)   (Castor bean)   3
Nicotiana_benthamiana_0.4.4_(Early_draft) 9
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   4
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   4
Phoenix_dactylifera__(Early_draft)   (Date palm)   5
NCBI_plasmid_sequences_(Plasmids) 2
TargetDB__(Targets) 63
Protozoadb_2010_08_(Protozoadb) 95
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1
STRING_v9.0.5_(STRING) 621
Uniprot_2018_03_genome 23874
NCBI_2017_08_genome 7428
Protein_Data_Bank_(all_PDB_sequenc) 1
NCBI_viral_sequences_(Viral) 8
PDB_chains_(SCOP_1.75)_(PDB) 0
UniProt__viral_sequences_(Viral) 23

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.