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Domain combinations for 53098,53098 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

53098 - Ribonuclease H-like
53098 - Ribonuclease H-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Pongo_abelii_76_2   (Sumatran orangutan)   0
Papio_anubis_76   (Olive baboon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_76_3   (Small-eared galago)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Rattus_norvegicus_76_5.0   (Norway rat)   0
Mus_musculus_76_38   (House mouse)   0
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Bos_taurus_76_3.1   (Cattle)   0
Ovis_aries_76_3.1   (Sheep)   0
Vicugna_pacos_76_1   (Alpaca)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   0
Felis_catus_76_6.2   (Domestic cat)   0
Equus_caballus_76_2   (Horse)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Pteropus_vampyrus_76_1   (Large flying fox)   0
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   1
Loxodonta_africana_76_3   (African savanna elephant)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   0
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   26
Saccoglossus_kowalevskii_v3.0 1
Anas_platyrhynchos_76_1.0   (Mallard)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1
Latimeria_chalumnae_76_1   (Coelacanth)   0
Lepisosteus_oculatus_76   (Spotted gar)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Ciona_intestinalis_76   (Vase tunicate)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 0
Crassostrea_gigas_22   (Pacific oyster)   2
Capitella_sp._I_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   0
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_pseudoobscura_2.13 0
Drosophila_suzukii 0
Megaselia_scalaris_22 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Acyrthosiphon_pisum_   (Pea aphid)   0
Rhodnius_prolixus_22 2
Strigamia_maritima_22 2
Pristionchus_pacificus_ 0
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1
Caenorhabditis_japonica_ 1
Caenorhabditis_brenneri_ 4
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 0
Hymenolepis_microstoma_ 1
Echinococcus_granulosus_ 0
Acropora_digitifera_v1.0 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   2
Hydra_vulgaris 4
Amphimedon_queenslandica 1
Sphaeroforma_arctica_JP610_ 0
Capsaspora_owczarzaki_ATCC_30864_ 0
Rhizomucor_miehei_CAU432_ 1
Ustilago_maydis_ 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Schizophyllum_commune_ 0
Punctularia_strigosozonata_v1.0 2
Tulasnella_calospora_AL13/4D_v1.0 0
Chaetomium_globosum_CBS_148.51_ 1
Neurospora_tetrasperma_ 1
Neurospora_discreta_FGSC_8579_ 0
Neurospora_crassa_OR74A_ 1
Acremonium_alcalophilumv_1.0 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Pyrenophora_teres_f._teres_22 0
Microsporum_canis_CBS_113480_ 0
Trichophyton_equinum_CBS_127.97_ 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Vanderwaltozyma_polyspora_DSM_70294_ 0
Schizosaccharomyces_cryophilus_OY26_22 0
Catenaria_anguillulae_PL171_v1.0 1
Allomyces_macrogynus_ATCC_38327_ 0
Pinus_taeda   (Loblolly pine)   6
Picea_abies   (Norway spruce)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   26
Carica_papaya_   (Papaya)   0
Glycine_max_v109   (Soybean)   0
Cucumis_sativus_v122   (Cucumber)   2
Fragaria_vesca_   (Wild strawberry)   3
Malus_domestica_v196   (Apple)   1
Prunus_persica_v139   (Peach)   3
Vitis_vinifera_   (Wine grape)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Solanum_tuberosum_   (Potato)   0
Actinidia_chinensis_Hongyang_ 5
Triticum_urartu_22 1
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   1
Oryza_barthii_22   (African wild rice)   2
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   2
Oryza_punctata_22 2
Oryza_nivara_22 1
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   41
Oryza_sativa_v193   (Rice)   42
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Setaria_italica_v164   (Foxtail millet)   1
Sorghum_bicolor_   (Sorghum)   3
Musa_balbisiana   (Balbis banana)   9
Musa_acuminata_22   (Wild Malaysian banana)   0
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Chlorella_vulgaris_ 0
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 1
Micromonas_sp._RCC299_ 1
Trypanosoma_vivax_ 0
Trypanosoma_congolense_2.4 0
Ectocarpus_siliculosus 0
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 5
Phytophthora_infestans_T30-4_ 2
Phytophthora_capsici_ 2
Phaeodactylum_tricornutumCCAP_1055/1 0
Fragilariopsis_cylindrus 1
Perkinsus_marinus_ATCC_50983_ 0
Paramecium_tetraurelia_ 1
Neospora_caninum 0
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 0
Plasmodium_chabaudi_ 0
Plasmodium_berghei_ANKA_ 0
Symbiodinium_minutum_clade_B1_v1.2 2
Naegleria_gruberi_ 0
Microcoleus_sp._PCC_7113 0
Microcystis_aeruginosa_NIES-843 1
Gordonia_polyisoprenivorans_VH2 0
Kytococcus_sedentarius_DSM_20547 1
Bifidobacterium_breve_ACS-071-V-Sch8b 1
Prevotella_melaninogenica_ATCC_25845 0
Phycisphaera_mikurensis_NBRC_102666 1
Isosphaera_pallida_ATCC_43644 1
Planctomyces_limnophilus_DSM_3776 1
Anaerobaculum_mobile_DSM_13181 0
Streptobacillus_moniliformis_DSM_12112 1
Myxococcus_fulvus_HW-1 1
Nitrosomonas_eutropha_C91 0
Hirschia_baltica_ATCC_49814 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 0
Psychrobacter_sp._G 1
Psychrobacter_arcticus_273-4 1
Psychrobacter_cryohalolentis_K5 1
Moraxella_catarrhalis_RH4 1
Acinetobacter_oleivorans_DR1 1
Acinetobacter_calcoaceticus_PHEA-2 1
Acinetobacter_baumannii_ATCC_17978 1
Acinetobacter_sp._ADP1 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   15
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   12
Neospora_caninum_Nc-Liverpool_6.2 0
Cyanothece_sp._PCC_7424 0
Frankia_sp._EuI1c 1
Mycobacterium_sp._MOTT36Y 0
Bifidobacterium_longum_NCC2705 1
Bifidobacterium_longum_DJO10A 1
Bifidobacterium_longum_subsp._infantis_157F 1
Bifidobacterium_longum_subsp._longum_KACC_91563 1
Bifidobacterium_longum_subsp._longum_F8 1
Bifidobacterium_longum_subsp._longum_JCM_1217 1
Coprococcus_catus_GD/7 0
Singulisphaera_acidiphila_DSM_18658 0
Desulfocapsa_sulfexigens_DSM_10523 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1
Rhodobacter_sphaeroides_ATCC_17025 1
Acinetobacter_genomosp._13TU__RUH2624 1
Acinetobacter_sp.__SH024 1
Acinetobacter_calcoaceticus_ruh2202 1
Acinetobacter_baumannii_ZW85-1 1
Acinetobacter_baumannii_TYTH-1 1
Acinetobacter_baumannii_BJAB0868 1
Acinetobacter_baumannii_BJAB0715 1
Acinetobacter_baumannii_BJAB07104 1
Acinetobacter_baumannii_TCDC-AB0715 1
Acinetobacter_baumannii_D1279779 1
Acinetobacter_baumannii_MDR-TJ 1
Acinetobacter_baumannii_1656-2 1
Acinetobacter_baumannii__ATCC_19606 1
Acinetobacter_baumannii_AB307-0294 1
Acinetobacter_baumannii_AYE 1
Acinetobacter_baumannii_SDF 1
Acinetobacter_baumannii_MDR-ZJ06 1
Acinetobacter_baumannii_AB0057 1
Acinetobacter_baumannii_ACICU 1
Acinetobacter_radioresistens__SH164 1
Acinetobacter_junii__SH205 1
Acinetobacter_johnsonii__SH046 1
Acinetobacter_lwoffii__SH145 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Pongo_abelii_69_2   (Sumatran orangutan)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_69_3   (Small-eared galago)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Rattus_norvegicus_69_3.4   (Norway rat)   0
Mus_musculus_69_38   (House mouse)   0
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Bos_taurus_69_3.1   (Cattle)   0
Vicugna_pacos_69_1   (Alpaca)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   0
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Pteropus_vampyrus_69_1   (Large flying fox)   0
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   1
Loxodonta_africana_69_3   (African savanna elephant)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   26
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1
Latimeria_chalumnae_69_1   (Coelacanth)   0
Gadus_morhua_69_1   (Atlantic cod)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Takifugu_rubripes_69_4   (Torafugu)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Ciona_intestinalis_69   (Vase tunicate)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Loa_loa_v3.3_(Request)   (Eye worm)   1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Lotus_japonicus__(Early_assembly) 0
Malus_x_domestica_(Duplicate)   (Apple)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 5
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
NCBI_plasmid_sequences_(Plasmids) 1
Protein_Data_Bank_(all_PDB_sequenc) 1
UniProt__viral_sequences_(Viral) 3
Protozoadb_2010_08_(Protozoadb) 0
TargetDB__(Targets) 2
STRING_v9.0.5_(STRING) 83
Uniprot_2018_03_genome 2254
NCBI_2017_08_genome 3892
NCBI_viral_sequences_(Viral) 4

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