SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for 54001,49758,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54001 - Cysteine proteinases
49758 - Calpain large subunit, middle domain (domain III)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Ochotona_princeps_76   (American pika)   1
Vicugna_pacos_76_1   (Alpaca)   1
Erinaceus_europaeus_76   (Western European hedgehog)   2
Procavia_capensis_76_1   (Cape rock hyrax)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Meleagris_gallopavo_76_2   (Turkey)   0
Anas_platyrhynchos_76_1.0   (Mallard)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Xenopus_laevis_   (African clawed frog)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Gadus_morhua_76_1   (Atlantic cod)   2
Takifugu_rubripes_76_4   (Torafugu)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Oryzias_latipes_76_1   (Japanese medaka)   1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Astyanax_mexicanus_76   (Mexican tetra)   1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Ciona_intestinalis_76   (Vase tunicate)   1
Adineta_vaga 4
Octopus_bimaculoides_280 1
Helobdella_robusta_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 0
Drosophila_suzukii 0
Drosophila_yakuba_1.3 0
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Megaselia_scalaris_22 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   0
Rhodnius_prolixus_22 0
Sarcoptes_scabiei 0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Pristionchus_pacificus_ 1
Meloidogyne_incognita_   (Southern root-knot nematode)   2
Echinococcus_multilocularis_ 0
Echinococcus_granulosus_ 0
Taenia_solium_   (Pork tapeworm)   0
Mnemiopsis_leidyi   (Sea walnut)   1
Amphimedon_queenslandica 1
Proterospongia_sp._ATCC_50818_ 0
Capsaspora_owczarzaki_ATCC_30864_ 1
Mortierella_verticillata_NRRL_6337_ 1
Thielavia_terrestris_NRRL_8126_ 0
Neurospora_tetrasperma_ 0
Neurospora_discreta_FGSC_8579_ 0
Neurospora_crassa_OR74A_ 0
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Trichoderma_longibrachiatum_ATCC_18648_v1.0 0
Setosphaeria_turcica_v1.0 0
Zasmidium_cellare_ATCC_36951_v1.0 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Candida_dubliniensis_CD36_ 0
Candida_tropicalis_MYA-3404_ 0
Candida_albicans_SC5314 0
Oryza_barthii_22   (African wild rice)   0
Musa_balbisiana   (Balbis banana)   0
Thecamonas_trahens_ATCC_50062_ 0
Bigelowiella_natans_CCMP2755_22 1
Cyanophora_paradoxa_ 0
Leishmania_mexicana_2.4 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Trypanosoma_vivax_ 0
Trypanosoma_cruzi_strain_CL_Brener 1
Trypanosoma_congolense_2.4 2
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Ectocarpus_siliculosus 0
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_irregulare_DAOM_BR486_22 0
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 0
Phytophthora_infestans_T30-4_ 0
Phytophthora_capsici_ 0
Naegleria_gruberi_ 1
Guillardia_theta_CCMP2712_v1.0_ 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Candida_albicans_WO-1_ 0
Batrachochytrium_dendrobatidis_JEL423_ 1
Batrachochytrium_dendrobatidis_JAM81_ 1
Trypanosoma_brucei_Lister_427_v4.1 0

Longest transcript per gene
Genome     Number
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Ochotona_princeps_69   (American pika)   1
Vicugna_pacos_69_1   (Alpaca)   1
Erinaceus_europaeus_69   (Western European hedgehog)   2
Procavia_capensis_69_1   (Cape rock hyrax)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Meleagris_gallopavo_69_2   (Turkey)   0
Gallus_gallus_69_2   (Chicken)   0
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Gadus_morhua_69_1   (Atlantic cod)   2
Takifugu_rubripes_69_4   (Torafugu)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Oryzias_latipes_69_1   (Japanese medaka)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Ciona_intestinalis_69   (Vase tunicate)   1
Drosophila_melanogaster_69_5   (Fruit fly)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
STRING_v9.0.5_(STRING) 7
Protozoadb_2010_08_(Protozoadb) 2
NCBI_2017_08_genome 102
Uniprot_2018_03_genome 744
TargetDB__(Targets) 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]