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Home > SCOP hierarchy > Domain combination - 54211,55666,46915,54211,55666,54791,_gap_

Domain combinations for 54211,55666,46915,54211,55666,54791,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54211 - Ribosomal protein S5 domain 2-like
55666 - Ribonuclease PH domain 2-like
46915 - Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
54211 - Ribosomal protein S5 domain 2-like
55666 - Ribonuclease PH domain 2-like
54791 - Eukaryotic type KH-domain (KH-domain type I)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Macaca_mulatta_76_1 (Rhesus monkey) 1

Crassostrea_gigas_22 (Pacific oyster) 1

Culex_pipiens_quinquefasciatus_ (Southern house mosquito) 1

Onchocerca_volvulus_22 1

Brugia_malayi_WS250 (Agent of lymphatic filariasis) 1

Caenorhabditis_briggsae_2 1

Glycine_max_v109 (Soybean) 1

Asterochloris_sp._Cgr/DA1pho_v1.0 1

Acidothermus_cellulolyticus_11B 1

Kineococcus_radiotolerans_SRS30216 1

Catenulispora_acidiphila_DSM_44928 1

Frankia_symbiont_of_Datisca_glomerata 1

Thermobifida_fusca_YX 1

Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1

Streptosporangium_roseum_DSM_43021 1

Kitasatospora_setae_KM-6054 1

Streptomyces_sp._PAMC26508 1

Streptomyces_flavogriseus_ATCC_33331 1

Streptomyces_sp._SirexAA-E 1

Streptomyces_griseus_subsp._griseus_NBRC_13350 1

Streptomyces_bingchenggensis_BCW-1 1

Streptomyces_violaceusniger_Tu_4113 1

Streptomyces_avermitilis_MA-4680 1

Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1

Streptomyces_scabiei_87.22 1

Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1

Kribbella_flavida_DSM_17836 1

Corynebacterium_ulcerans_0102 1

Tropheryma_whipplei_TW08/27 1

Sanguibacter_keddieii_DSM_10542 1

Kytococcus_sedentarius_DSM_20547 1

Leifsonia_xyli_subsp._xyli_str._CTCB07 1

Microbacterium_testaceum_StLB037 1

Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 1

Intrasporangium_calvum_DSM_43043 1

Isoptericola_variabilis_225 1

Cellulomonas_flavigena_DSM_20109 1

Cellulomonas_fimi_ATCC_484 1

[Cellvibrio]_gilvus_ATCC_13127 1

Kocuria_rhizophila_DC2201 1

Arthrobacter_sp._FB24 1

Candidatus_Sulcia_muelleri_SMDSEM 1

Nitratifractor_salsuginis_DSM_16511 1

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Strains
Genome Number

Nocardiopsis_alba_ATCC_BAA-2165 1

Streptomyces_albus_J1074 1

Streptomyces_rapamycinicus_NRRL_5491 1

Streptomyces_davawensis_JCM_4913 1

Streptomyces_fulvissimus_DSM_40593 1

Streptomyces_venezuelae_ATCC_10712 1

Streptomyces_collinus_Tu_365 1

Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1

Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1

Corynebacterium_ulcerans_BR-AD22 1

Corynebacterium_ulcerans_809 1

Corynebacterium_pseudotuberculosis_P54B96 1

Corynebacterium_pseudotuberculosis_267 1

Corynebacterium_pseudotuberculosis_I19 1

Tropheryma_whipplei_str._Twist 1

Leifsonia_xyli_subsp._cynodontis_DSM_46306 1

Clavibacter_michiganensis_subsp._sepedonicus 1

Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1

Longest transcript per gene
Genome Number

Macaca_mulatta_69_1 (Rhesus monkey) 1

Others
Genome Number

Loa_loa_v3.3_(Request) (Eye worm) 2

Wuchereria_bancrofti_v1.0_(Request) (Agent of lymphatic filariasis) 1

Brugia_malayi_v1.0_(Duplicate) (Agent of lymphatic filariasis) 1

Nicotiana_benthamiana_0.4.4_(Early_draft) 0

STRING_v9.0.5_(STRING) 19

Uniprot_2018_03_genome 18900

NCBI_2017_08_genome 1371

PDB_chains_(SCOP_1.75)_(PDB) 1

Protein_Data_Bank_(all_PDB_sequenc) 2

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Domain combinations for 54211,55666,46915,54211,55666,54791,_gap_ superfamilies in groups of genomes