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  Home > SCOP hierarchy > Domain combination - 54236

Domain combinations for 54236 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54236 - Ubiquitin-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   136
Pan_troglodytes_76_2.1.4   (Chimpanzee)   18
Gorilla_gorilla_76_3.1   (Western gorilla)   25
Pongo_abelii_76_2   (Sumatran orangutan)   23
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   19
Papio_anubis_76   (Olive baboon)   15
Macaca_mulatta_76_1   (Rhesus monkey)   34
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   30
Otolemur_garnettii_76_3   (Small-eared galago)   20
Microcebus_murinus_76_1   (Gray mouse lemur)   13
Rattus_norvegicus_76_5.0   (Norway rat)   39
Mus_musculus_76_38   (House mouse)   77
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   12
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   20
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   25
Cavia_porcellus_76_3   (Domestic guinea pig)   15
Oryctolagus_cuniculus_76_2   (Rabbit)   30
Ochotona_princeps_76   (American pika)   11
Tupaia_belangeri_76   (Northern tree shrew)   14
Sus_scrofa_76_10.2   (Pig)   35
Bos_taurus_76_3.1   (Cattle)   28
Ovis_aries_76_3.1   (Sheep)   19
Vicugna_pacos_76_1   (Alpaca)   9
Tursiops_truncatus_76_1   (Bottlenose dolphin)   11
Mustela_putorius_furo_76_1.0   (Domestic ferret)   20
Ailuropoda_melanoleuca_76_1   (Giant panda)   26
Canis_familiaris_76_3.1   (Dog)   18
Felis_catus_76_6.2   (Domestic cat)   26
Equus_caballus_76_2   (Horse)   21
Myotis_lucifugus_76_2.0   (Little brown bat)   28
Pteropus_vampyrus_76_1   (Large flying fox)   13
Sorex_araneus_76_1   (European shrew)   12
Erinaceus_europaeus_76   (Western European hedgehog)   14
Procavia_capensis_76_1   (Cape rock hyrax)   8
Loxodonta_africana_76_3   (African savanna elephant)   23
Echinops_telfairi_76   (Small Madagascar hedgehog)   19
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   26
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   10
Macropus_eugenii_76_1.0   (Tammar wallaby)   12
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   15
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   21
Ornithorhynchus_anatinus_76_5   (Platypus)   24
Saccoglossus_kowalevskii_v3.0 25
Petromyzon_marinus_76_7.0   (Sea lamprey)   12
Meleagris_gallopavo_76_2   (Turkey)   10
Gallus_gallus_76_4   (Chicken)   10
Anas_platyrhynchos_76_1.0   (Mallard)   14
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   15
Ficedula_albicollis_76_1.0   (Collared flycatcher)   12
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   16
Anolis_carolinensis_76_2.0   (Green anole)   15
Xenopus_laevis_   (African clawed frog)   58
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   19
Latimeria_chalumnae_76_1   (Coelacanth)   21
Lepisosteus_oculatus_76   (Spotted gar)   13
Gadus_morhua_76_1   (Atlantic cod)   22
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   23
Takifugu_rubripes_76_4   (Torafugu)   24
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   27
Oryzias_latipes_76_1   (Japanese medaka)   27
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   27
Poecilia_formosa_76   (Amazon molly)   22
Oreochromis_niloticus_76_1.0   (Nile tilapia)   17
Astyanax_mexicanus_76   (Mexican tetra)   25
Danio_rerio_76_9   (Zebrafish)   45
Oikopleura_dioica 20
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   12
Ciona_intestinalis_76   (Vase tunicate)   10
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   18
Adineta_vaga 53
Octopus_bimaculoides_280 21
Crassostrea_gigas_22   (Pacific oyster)   11
Lottia_gigantea_   (Owl limpet)   20
Helobdella_robusta_ 16
Capitella_sp._I_ 28
Danaus_plexippus_OGS1.0   (Monarch butterfly)   9
Heliconius_melpomene_   (Postman butterfly)   9
Bombyx_mori_   (Domestic silkworm)   21
Nasonia_vitripennis_   (Jewel wasp)   9
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   27
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   15
Linepithema_humile_v1.1   (Argentine ant)   13
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   10
Solenopsis_invicta_v.2.2.3   (Red fire ant)   9
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   8
Atta_cephalotes_v1.1 10
Camponotus_floridanus_v3.3   (Florida carpenter ant)   10
Lucilia_cuprina   (Australian sheep blowfly)   6
Drosophila_grimshawi_1.3 10
Drosophila_willistoni_1.3 10
Drosophila_pseudoobscura_2.13 11
Drosophila_persimilis_1.3 12
Drosophila_suzukii 9
Drosophila_yakuba_1.3 12
Drosophila_simulans_1.3 10
Drosophila_sechellia_1.3 9
Drosophila_melanogaster_76_5   (Fruit fly)   14
Drosophila_erecta_1.3 11
Drosophila_ananassae_1.3 13
Drosophila_virilis_1.2 11
Drosophila_mojavensis_1.3 13
Megaselia_scalaris_22 7
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   17
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   11
Anopheles_darlingi_22   (American malaria mosquito)   5
Anopheles_gambiae_49_3j   (African malaria mosquito)   12
Tribolium_castaneum_3.0   (Red flour beetle)   13
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   12
Acyrthosiphon_pisum_   (Pea aphid)   10
Rhodnius_prolixus_22 13
Daphnia_pulex_   (Common water flea)   14
Strigamia_maritima_22 10
Sarcoptes_scabiei 13
Tetranychus_urticae_   (Two-spotted spider mite)   12
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   15
Pristionchus_pacificus_ 16
Meloidogyne_incognita_   (Southern root-knot nematode)   25
Meloidogyne_hapla_ 8
Onchocerca_volvulus_22 10
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   20
Caenorhabditis_japonica_ 16
Caenorhabditis_brenneri_ 24
Caenorhabditis_remanei_ 26
Caenorhabditis_elegans_76_235   (Roundworm)   19
Caenorhabditis_briggsae_2 16
Trichinella_spiralis_22 8
Hymenolepis_microstoma_ 7
Echinococcus_multilocularis_ 7
Echinococcus_granulosus_ 7
Taenia_solium_   (Pork tapeworm)   13
Schistosoma_mansoni_ 13
Mnemiopsis_leidyi   (Sea walnut)   10
Thelohanellus_kitauei 2
Acropora_digitifera_v1.0 21
Nematostella_vectensis_1.0   (Starlet sea anemone)   16
Hydra_vulgaris 14
Amphimedon_queenslandica 14
Trichoplax_adhaerens_ 14
Proterospongia_sp._ATCC_50818_ 10
Monosiga_brevicollis_ 6
Sphaeroforma_arctica_JP610_ 15
Capsaspora_owczarzaki_ATCC_30864_ 7
Conidiobolus_coronatus_NRRL28638_v1.0 12
Mortierella_verticillata_NRRL_6337_ 9
Phycomyces_blakesleeanus_ 11
Rhizopus_oryzae_RA_99-880_ 11
Mucor_circinelloides_ 8
Rhizomucor_miehei_CAU432_ 8
Malassezia_globosa_CBS_7966_ 8
Sporisorium_reilianum_22 6
Ustilago_maydis_ 4
Mixia_osmundae_IAM_14324_v1.0 6
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 6
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 4
Melampsora_laricis-populina_ 10
Rhodotorula_graminis_WP1_v1.0 7
Sporobolomyces_roseus_IAM_13481_ 4
Microbotryum_violaceum_22 5
Wallemia_sebi_v1.0 4
Sphaerobolus_stellatus_v1.0 16
Piloderma_croceum_F_1598_v1.0 15
Serpula_lacrymans_var._lacrymans_S7.9_ 7
Coniophora_puteana 9
Hydnomerulius_pinastri_v2.0 6
Paxillus_rubicundulus_Ve08.2h10_v1.0 9
Pisolithus_microcarpus_441_v1.0 9
Pisolithus_tinctorius_Marx_270_v1.0 8
Scleroderma_citrinum_Foug_A_v1.0 8
Coprinopsis_cinerea_okayama7_130_v3 7
Pleurotus_ostreatus_   (Oyster mushroom)   8
Amanita_thiersii_Skay4041_v1.0 5
Amanita_muscaria_Koide_v1.0   (Fly agaric)   9
Galerina_marginata_v1.0 8
Hebeloma_cylindrosporum_h7_v2.0 10
Laccaria_bicolor_S238N-H82_ 11
Agaricus_bisporus_var._bisporus_ 6
Schizophyllum_commune_ 8
Stereum_hirsutum_FP-91666_SS1__v1.0 10
Heterobasidion_annosum_ 8
Gloeophyllum_trabeumv1.0 7
Punctularia_strigosozonata_v1.0 6
Sebacina_vermifera_MAFF_305830_v1.0 8
Fomitiporia_mediterranea_v1.0 5
Tulasnella_calospora_AL13/4D_v1.0 14
Postia_placenta_ 11
Wolfiporia_cocos_MD-104_SS10__v1.0 8
Fomitopsis_pinicolav1.0 8
Fomitopsis_pinicola_FP-58527_SS1_v3.0 8
Phanerochaete_chrysosporium_RP-78_2.1 7
Dichomitus_squalens 7
Trametes_versicolor_v1.0 6
Tremella_mesenterica_   (Witches' butter)   6
Daldinia_eschscholzii_EC12_v1.0 3
Apiospora_montagnei_NRRL_25634_v1.0 6
Magnaporthe_poae_ATCC_64411_22 4
Magnaporthe_grisea_70-15_ 5
Podospora_anserina_ 3
Sporotrichum_thermophile_ATCC_42464_ 6
Thielavia_terrestris_NRRL_8126_ 7
Chaetomium_globosum_CBS_148.51_ 5
Neurospora_tetrasperma_ 4
Neurospora_discreta_FGSC_8579_ 4
Neurospora_crassa_OR74A_ 5
Cryphonectria_parasitica_   (Chestnut blight fungus)   7
Verticillium_albo-atrum_VaMs.102_ 4
Verticillium_dahliae_VdLs.17_ 4
Acremonium_alcalophilumv_1.0 4
Glomerella_graminicola_22 3
Fusarium_graminearum_ 4
Nectria_haematococca_mpVI_ 6
Fusarium_oxysporum_f._sp._lycopersici_4286_ 4
Fusarium_verticillioides_7600_ 4
Trichoderma_asperellum_CBS_433.97_v1.0 5
Trichoderma_atroviride_ 4
Trichoderma_citrinoviride_v1.0 4
Trichoderma_reesei_1.2 5
Trichoderma_virens_Gv29-8_ 6
Trichoderma_longibrachiatum_ATCC_18648_v1.0 5
Trichoderma_harzianum_CBS_226.95_v1.0 7
Amorphotheca_resinae_v1.0   (Creosote fungus)   3
Botrytis_cinerea_B05.10_ 5
Sclerotinia_sclerotiorum_ 4
Blumeria_graminis_22 3
Didymella_exigua_CBS_183.55_v1.0 3
Leptosphaeria_maculans_22 4
Setosphaeria_turcica_v1.0 4
Cochliobolus_miyabeanus_ATCC_44560_v1.0 5
Cochliobolus_victoriae_FI3_v1.0 5
Cochliobolus_carbonum_26-R-13_v1.0 5
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   6
Alternaria_brassicicola_ 5
Cochliobolus_lunatus_m118_v2.0 5
Pyrenophora_teres_f._teres_22 3
Pyrenophora_tritici-repentis_ 3
Stagonospora_nodorum_ 4
Mycosphaerella_graminicola_IPO323_ 8
Zasmidium_cellare_ATCC_36951_v1.0 4
Dothistroma_septosporum 6
Septoria_musiva_v1.0 4
Mycosphaerella_fijiensis_CIRAD86_ 6
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3
Paracoccidioides_brasiliensis_Pb18_ 4
Coccidioides_posadasii_RMSCC_3488_ 4
Coccidioides_immitis_RS_ 4
Ajellomyces_dermatitidis_SLH14081_ 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2
Microsporum_canis_CBS_113480_ 4
Trichophyton_equinum_CBS_127.97_ 4
Trichophyton_verrucosum_HKI_0517_ 0
Arthroderma_benhamiae_CBS_112371_ 1
Trichophyton_tonsurans_CBS_112818_ 4
Trichophyton_rubrum_CBS_118892_ 4
Uncinocarpus_reesii_1704_ 2
Aspergillus_zonatus_v1.0 5
Penicillium_chrysogenum_Wisconsin_54-1255_ 4
Penicillium_chrysogenum_v1.0 4
Aspergillus_acidus_v1.0 4
Aspergillus_fumigatus_Af293 3
Aspergillus_brasiliensis_v1.0 3
Aspergillus_nidulans_FGSC_A4_ 4
Aspergillus_sydowii_v1.0 3
Aspergillus_versicolor_v1.0 3
Aspergillus_glaucus 5
Aspergillus_carbonarius_ITEM_5010_ 5
Neosartorya_fischeri_NRRL_181_ 5
Aspergillus_terreus_NIH2624_ 3
Aspergillus_tubingensis_v1.0 4
Aspergillus_wentii_v1.0 5
Aspergillus_oryzae_RIB40_ 2
Aspergillus_niger_22 5
Aspergillus_niger_ATCC_1015_ 1
Aspergillus_flavus_NRRL3357_ 4
Aspergillus_clavatus_NRRL_1_ 4
Penicillium_marneffei_ATCC_18224_ 8
Tuber_melanosporum_Mel28_22 4
Tuber_melanosporum_Vittad_   (Perigord truffle)   4
Hansenula_polymorpha_v2.0 2
Dekkera_bruxellensis_CBS_2499_v2.0 5
Pichia_membranifaciensv1.0 4
Candida_tanzawaensis_NRRL_Y-17324__v1.0 4
Candida_dubliniensis_CD36_ 3
Candida_tropicalis_MYA-3404_ 4
Candida_parapsilosis_ 2
Candida_albicans_SC5314 4
Lodderomyces_elongisporus_NRRL_YB-4239_ 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 6
Pichia_stipitis_CBS_6054_ 3
Candida_guilliermondii_ATCC_6260_ 3
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 4
Debaromyces_hansenii 4
Wickerhamomyces_anomalus 6
Pichia_pastoris_GS115_ 3
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 3
Yarrowia_lipolytica_CLIB122 5
Candida_lusitaniae_ATCC_42720_ 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 6
Vanderwaltozyma_polyspora_DSM_70294_ 5
Candida_glabrata_CBS138 4
Kluyveromyces_thermotolerans_CBS_6340 4
Lachancea_kluyveri_ 5
Kluyveromyces_waltii 3
Ashbya_gossypii_ATCC_10895_ 4
Zygosaccharomyces_rouxii_ 5
Saccharomyces_mikatae_MIT 7
Saccharomyces_paradoxus_MIT 4
Saccharomyces_cerevisiae_76   (Baker's yeast)   6
Saccharomyces_bayanus_MIT 5
Kluyveromyces_lactis 4
Schizosaccharomyces_cryophilus_OY26_22 8
Schizosaccharomyces_octosporus_yFS286_ 8
Schizosaccharomyces_japonicus_yFS275_ 7
Schizosaccharomyces_pombe   (Fission yeast)   7
Catenaria_anguillulae_PL171_v1.0 15
Allomyces_macrogynus_ATCC_38327_ 17
Spizellomyces_punctatus_DAOM_BR117_ 7
Dictyostelium_discoideum 21
Dictyostelium_purpureum_ 15
Entamoeba_dispar_1.2 6
Entamoeba_invadens_1.2 2
Entamoeba_histolytica_1 12
Selaginella_moellendorffii_ 25
Pinus_taeda   (Loblolly pine)   19
Picea_abies   (Norway spruce)   22
Eucalyptus_grandis_v201   (Rose gum)   42
Theobroma_cacao_B97-61/B2_v1   (Cacao)   27
Gossypium_raimondii_v221 96
Citrus_clementina_v165 48
Citrus_sinensis_v154   (Sweet orange)   44
Thellungiella_halophila_v173 44
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   47
Capsella_rubella_v183 34
Arabidopsis_lyrata_   (Lyrate rockcress)   38
Arabidopsis_thaliana_10   (Thale cress)   44
Carica_papaya_   (Papaya)   24
Medicago_truncatula_   (Barrel medic)   41
Phaseolus_vulgaris_v186   (French bean)   26
Glycine_max_v109   (Soybean)   76
Cucumis_sativus_v122   (Cucumber)   50
Fragaria_vesca_   (Wild strawberry)   15
Malus_domestica_v196   (Apple)   41
Prunus_persica_v139   (Peach)   31
Linum_usitatissimum_v200   (Flax)   28
Manihot_esculenta_v147   (Cassava)   42
Populus_trichocarpa_v156   (Black cottonwood)   45
Vitis_vinifera_   (Wine grape)   22
Mimulus_guttatus_v140   (Spotted monkey flower)   29
Solanum_lycopersicum_v.2.3   (Tomato)   27
Solanum_tuberosum_   (Potato)   49
Actinidia_chinensis_Hongyang_ 15
Aquilegia_coerulea_v195 42
Triticum_urartu_22 13
Triticum_aestivum_22   (Bread wheat)   84
Aegilops_tauschii_22 22
Brachypodium_distachyon_   (Stiff brome)   29
Oryza_barthii_22   (African wild rice)   27
Oryza_meridionalis_22 20
Oryza_glumaepatula_22 27
Oryza_glaberrima   (African rice)   22
Oryza_punctata_22 15
Oryza_nivara_22 27
Oryza_brachyantha_22   (Malo sina)   23
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   36
Oryza_sativa_v193   (Rice)   36
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   18
Panicum_virgatum_v202   (Switchgrass)   68
Setaria_italica_v164   (Foxtail millet)   30
Zea_mays_subsp._mays_   (Maize)   42
Zea_mays_v181   (Maize)   59
Sorghum_bicolor_   (Sorghum)   25
Musa_balbisiana   (Balbis banana)   18
Musa_acuminata_22   (Wild Malaysian banana)   40
Amborella_trichopoda_22 17
Physcomitrella_patens 23
Coccomyxa_subellipsoidea_sp._C-169_v2 11
Asterochloris_sp._Cgr/DA1pho_v1.0 7
Chlorella_variabilis_sp._NC64A_ 12
Chlorella_vulgaris_ 9
Volvox_carteri_f._nagariensis_ 7
Volvox_carteri_v199 7
Chlamydomonas_reinhardtii_4.0 13
Ostreococcus_sp._RCC809_ 8
Ostreococcus_lucimarinus_CCE9901_ 6
Ostreococcus_tauri_ 6
Bathycoccus_prasinos_ 3
Micromonas_sp._RCC299_ 9
Micromonas_pusilla_CCMP1545_v3.0 8
Cyanidioschyzon_merolae_strain_10D_22 3
Cyanidioschyzon_merolae 2
Porphyridium_purpureum_02_2012 3
Thecamonas_trahens_ATCC_50062_ 7
Bigelowiella_natans_CCMP2755_22 21
Giardia_lamblia_2.3 5
Cyanophora_paradoxa_ 22
Leishmania_mexicana_2.4 16
Leishmania_major_strain_Friedlin_ 29
Leishmania_infantum_JPCM5_2.4 12
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 10
Trypanosoma_vivax_ 7
Trypanosoma_cruzi_strain_CL_Brener 5
Trypanosoma_congolense_2.4 3
Trypanosoma_brucei_gambiense_v4.1 7
Trypanosoma_brucei_TREU927_v4.1 7
Ectocarpus_siliculosus 8
Aureococcus_anophagefferens_ 18
Albugo_laibachii_22 6
Pythium_iwayamai_DAOM_BR242034_22 10
Pythium_arrhenomanes_ATCC_12531_22 4
Pythium_ultimum_v1.7-2 11
Pythium_aphanidermatum_DAOM_BR444_22 6
Pythium_irregulare_DAOM_BR486_22 8
Pythium_vexans_DAOM_BR484_22 5
Phytophthora_ramorum_1.1   (Sudden oak death agent)   13
Phytophthora_sojae_1.1 8
Phytophthora_infestans_T30-4_ 9
Phytophthora_capsici_ 12
Hyaloperonospora_arabidopsidis_22 8
Phaeodactylum_tricornutumCCAP_1055/1 6
Fragilariopsis_cylindrus 15
Thalassiosira_pseudonana_CCMP1335 7
Perkinsus_marinus_ATCC_50983_ 21
Paramecium_tetraurelia_ 49
Tetrahymena_thermophila_SB210_1_ 8
Ichthyophthirius_multifiliis_strain_G5_ 5
Cryptosporidium_hominis 5
Cryptosporidium_muris 6
Cryptosporidium_parvum_Iowa_II 6
Neospora_caninum 7
Toxoplasma_gondii_VEG 5
Toxoplasma_gondii_ME49 6
Toxoplasma_gondii_GT1 5
Babesia_bovis_T2Bo_ 10
Theileria_parva__ 7
Theileria_annulata 4
Plasmodium_falciparum_3D7_ 5
Plasmodium_vivax_SaI-1_7.0 6
Plasmodium_knowlesi_strain_H_ 6
Plasmodium_yoelii_ssp._yoelii_1_ 3
Plasmodium_chabaudi_ 6
Plasmodium_berghei_ANKA_ 6
Symbiodinium_minutum_clade_B1_v1.2 12
Naegleria_gruberi_ 14
Trichomonas_vaginalis_ 29
Guillardia_theta_CCMP2712_v1.0_ 15
Emiliania_huxleyi_CCMP1516_ 41
Acaryochloris_marina_MBIC11017 0
Trichodesmium_erythraeum_IMS101 0
Gloeocapsa_sp._PCC_7428 0
Rivularia_sp._PCC_7116 0
Anabaena_variabilis_ATCC_29413 0
Mycoplasma_haemofelis_Ohio2 0
Conexibacter_woesei_DSM_14684 0
Nakamurella_multipartita_DSM_44233 0
Blastococcus_saxobsidens_DD2 0
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 0
Thermomonospora_curvata_DSM_43183 0
Streptomyces_sp._SirexAA-E 0
Streptomyces_griseus_subsp._griseus_NBRC_13350 0
Streptomyces_bingchenggensis_BCW-1 0
Streptomyces_avermitilis_MA-4680 0
Saccharopolyspora_erythraea_NRRL_2338 0
Mycobacterium_intracellulare_ATCC_13950 0
Mycobacterium_avium_104 0
Mycobacterium_tuberculosis_KZN_1435 0
Mycobacterium_tuberculosis 0
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 0
Mycobacterium_rhodesiae_NBB3 0
Mycobacterium_smegmatis_str._MC2_155 0
Corynebacterium_kroppenstedtii_DSM_44385 0
Cellulomonas_flavigena_DSM_20109 0
Bifidobacterium_dentium_Bd1 0
Mobiluncus_curtisii_ATCC_43063 0
Clostridium_clariflavum_DSM_19732 0
Clostridium_thermocellum_ATCC_27405 1
Ethanoligenens_harbinense_YUAN-3 0
Ruminococcus_albus_7 0
butyrate-producing_bacterium_SS3/4 0
Desulfosporosinus_orientis_DSM_765 0
Clostridium_sticklandii_DSM_519 0
Clostridium_phytofermentans_ISDg 0
Clostridium_lentocellum_DSM_5427 1
Eubacterium_rectale_M104/1 0
Eubacterium_rectale_ATCC_33656 1
Coprococcus_sp._ART55/1 1
Clostridium_botulinum_A_str._ATCC_3502 0
Clostridium_acetobutylicum_ATCC_824 1
Mahella_australiensis_50-1_BON 0
Enterococcus_sp._7L76 0
Enterococcus_hirae_ATCC_9790 1
Enterococcus_faecalis_62 1
Oenococcus_oeni_PSU-1 0
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 0
Lactobacillus_johnsonii_FI9785 0
Lactobacillus_reuteri_DSM_20016 0
Lactobacillus_plantarum_JDM1 0
Lactococcus_lactis_subsp._cremoris_MG1363 1
Streptococcus_parasanguinis_ATCC_15912 1
Streptococcus_agalactiae_A909 0
Streptococcus_sanguinis_SK36 1
Streptococcus_oralis_Uo5 1
Streptococcus_gordonii_str._Challis_substr._CH1 1
Kyrpidia_tusciae_DSM_2912 0
Paenibacillus_mucilaginosus_3016 0
Paenibacillus_polymyxa_M1 0
Listeria_welshimeri_serovar_6b_str._SLCC5334 0
Listeria_innocua_Clip11262 0
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 0
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 0
Solibacillus_silvestris_StLB046 1
Geobacillus_thermoglucosidasius_C56-YS93 0
Oceanobacillus_iheyensis_HTE831 1
Halobacillus_halophilus_DSM_2266 0
Bacillus_sp._JS 1
Bacillus_sp._1NLA3E 0
Bacillus_amyloliquefaciens_FZB42 1
Bacillus_subtilis_subsp._subtilis_str._168 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_halodurans_C-125 1
Bacillus_weihenstephanensis_KBAB4 0
Bacillus_pseudofirmus_OF4 1
Bacillus_clausii_KSM-K16 0
Bacillus_pumilus_SAFR-032 0
Bacillus_megaterium_DSM_319 0
Bacillus_coagulans_2-6 1
Staphylococcus_lugdunensis_HKU09-01 0
Staphylococcus_haemolyticus_JCSC1435 0
Staphylococcus_carnosus_subsp._carnosus_TM300 0
Staphylococcus_aureus_subsp._aureus_JH1 1
Gemmatimonas_aurantiaca_T-27 0
Saprospira_grandis_str._Lewin 0
Niastella_koreensis_GR20-10 0
Rhodothermus_marinus_DSM_4252 0
Flexibacter_litoralis_DSM_6794 0
Spirosoma_linguale_DSM_74 0
Bacteroides_thetaiotaomicron_VPI-5482 0
Bacteroides_fragilis_YCH46 0
Fluviicola_taffensis_DSM_16823 0
Owenweeksia_hongkongensis_DSM_17368 0
Gramella_forsetii_KT0803 0
Lacinutrix_sp._5H-3-7-4 0
Cellulophaga_lytica_DSM_7489 0
Ornithobacterium_rhinotracheale_DSM_15997 0
Capnocytophaga_ochracea_DSM_7271 0
Flavobacterium_indicum_GPTSA100-9 0
Waddlia_chondrophila_WSU_86-1044 0
Candidatus_Protochlamydia_amoebophila_UWE25 0
Parachlamydia_acanthamoebae_UV-7 0
Simkania_negevensis_Z 0
Isosphaera_pallida_ATCC_43644 0
Pirellula_staleyi_DSM_6068 0
Sphaerochaeta_globus_str._Buddy 0
Treponema_paraluiscuniculi_Cuniculi_A 0
Fervidobacterium_nodosum_Rt17-B1 0
Persephonella_marina_EX-H1 0
Dictyoglomus_turgidum_DSM_6724 0
Candidatus_Chloracidobacterium_thermophilum_B 1
Streptobacillus_moniliformis_DSM_12112 0
Acidithiobacillus_ferrooxidans_ATCC_53993 0
Campylobacter_lari_RM2100 0
Geobacter_uraniireducens_Rf4 0
Dechloromonas_aromatica_RCB 0
Burkholderia_cenocepacia_HI2424 0
Acidovorax_citrulli_AAC00-1 0
Acidovorax_avenae_subsp._avenae_ATCC_19860 0
Methylobacillus_flagellatus_KT 0
Sphingopyxis_alaskensis_RB2256 0
alpha_proteobacterium_HIMB5 0
Orientia_tsutsugamushi_str._Boryong 0
Xanthobacter_autotrophicus_Py2 0
Sinorhizobium_fredii_NGR234 0
Vibrio_anguillarum_775 0
Shewanella_pealeana_ATCC_700345 0
Pseudoalteromonas_sp._SM9913 0
Hahella_chejuensis_KCTC_2396 0
Allochromatium_vinosum_DSM_180 0
Rahnella_sp._Y9602 0
Yersinia_pseudotuberculosis_IP_31758 0
Dickeya_dadantii_Ech703 0
Pantoea_vagans_C9-1 0
Candidatus_Caldiarchaeum_subterraneum 1
Cenarchaeum_symbiosum_A 0
Fervidicoccus_fontis_Kam940 0
Ignisphaera_aggregans_DSM_17230 0
Ignicoccus_hospitalis_KIN4/I 0
Vulcanisaeta_moutnovskia_768-28 0
Pyrobaculum_calidifontis_JCM_11548 0
Methanosarcina_acetivorans_C2A 0
Methanospirillum_hungatei_JF-1 0
Thermococcus_kodakarensis_KOD1 0
Thermoplasmatales_archaeon_BRNA1 1
Thermoplasma_acidophilum_DSM_1728 0
Natrialba_magadii_ATCC_43099 0
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 0
Aciduliprofundum_boonei_T469 0
Acholeplasma_laidlawii_PG-8A 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   48
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   13
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   13
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   16
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   13
Cryptococcus_neoformans_var._grubii_H99_ 5
Cryptococcus_neoformans_B-3501A_ 6
Cryptococcus_neoformans_JEC21_ 5
Paracoccidioides_brasiliensis_Pb01_ 2
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_posadasii_str._Silveira_ 4
Coccidioides_immitis_RMSCC_3703_ 3
Coccidioides_immitis_RMSCC_2394_ 3
Coccidioides_immitis_H538.4_ 5
Ajellomyces_dermatitidis_ER-3_ 4
Histoplasma_capsulatum_H143 4
Histoplasma_capsulatum_H88 3
Histoplasma_capsulatum_G186AR 3
Aspergillus_fumigatus_A1163_ 3
Candida_albicans_WO-1_ 4
Saccharomyces_cerevisiae_UC5 6
Saccharomyces_cerevisiae_PW5 4
Saccharomyces_cerevisiae_FL100 4
Saccharomyces_cerevisiae_CLIB382 2
Saccharomyces_cerevisiae_CLIB324 4
Saccharomyces_cerevisiae_CBS7960 7
Saccharomyces_cerevisiae_YJM269 6
Saccharomyces_cerevisiae_T7 6
Saccharomyces_cerevisiae_FostersB 6
Saccharomyces_cerevisiae_FostersO 7
Saccharomyces_cerevisiae_VL3 6
Saccharomyces_cerevisiae_Vin13 6
Saccharomyces_cerevisiae_LalvinQA23 5
Saccharomyces_cerevisiae_AWRI796 7
Saccharomyces_cerevisiae_Sigma1278b 6
Saccharomyces_cerevisiae_W303 6
Saccharomyces_cerevisiae_JAY291 6
Saccharomyces_cerevisiae_AWRI1631 5
Saccharomyces_cerevisiae_YPS163 4
Saccharomyces_cerevisiae_M22 4
Saccharomyces_cerevisiae_T73 4
Saccharomyces_cerevisiae_CLIB215 6
Saccharomyces_cerevisiae_Y10 2
Saccharomyces_cerevisiae_YJM789_ 5
Saccharomyces_cerevisiae_YJM789 6
Saccharomyces_cerevisiae_RM11-1a 6
Saccharomyces_cerevisiae_RM11-1a_ 6
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   6
Schizosaccharomyces_pombe_972h-_ 7
Batrachochytrium_dendrobatidis_JEL423_ 8
Batrachochytrium_dendrobatidis_JAM81_ 11
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   20
Hordeum_vulgare_22   (Domesticated barley)   18
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   26
Trypanosoma_brucei_Lister_427_v4.1 7
Neospora_caninum_Nc-Liverpool_6.2 7
Plasmodium_falciparum_HB3_ 3
Plasmodium_falciparum_Dd2_ 4
Synechococcus_elongatus_PCC_6301 0
Crinalium_epipsammum_PCC_9333 2
Cyanothece_sp._ATCC_51142 0
Calothrix_parietina_Calothrix_sp._PCC_6303 0
Mycoplasma_parvum_str._Indiana 0
Candidatus_Mycoplasma_haemolamae_str._Purdue 0
Mycoplasma_haemofelis_str._Langford_1 0
Streptomyces_fulvissimus_DSM_40593 0
Mycobacterium_sp._MOTT36Y 0
Mycobacterium_sp._JDM601 0
Mycobacterium_yongonense_05-1390 0
Mycobacterium_intracellulare_MOTT-64 0
Mycobacterium_indicus_pranii_MTCC_9506 0
Mycobacterium_intracellulare_MOTT-02 0
Mycobacterium_avium_subsp._paratuberculosis_MAP4 0
Mycobacterium_avium_subsp._paratuberculosis_K-10 0
Mycobacterium_canettii_CIPT_140070008 0
Mycobacterium_canettii_CIPT_140070010 0
Mycobacterium_tuberculosis_EAI5/NITR206 0
Mycobacterium_tuberculosis_EAI5 0
Mycobacterium_tuberculosis_CAS/NITR204 0
Mycobacterium_tuberculosis_str._Beijing/NITR203 0
Mycobacterium_tuberculosis_UT205 0
Mycobacterium_tuberculosis_RGTB423 0
Mycobacterium_tuberculosis_RGTB327 0
Mycobacterium_tuberculosis_CTRI-2 0
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 0
Mycobacterium_tuberculosis_KZN_605 0
Mycobacterium_tuberculosis_KZN_4207 0
Mycobacterium_tuberculosis_CCDC5180 0
Mycobacterium_tuberculosis_CCDC5079 0
Mycobacterium_tuberculosis_CCDC5079 0
Mycobacterium_tuberculosis_H37Ra 0
Mycobacterium_tuberculosis_str._Haarlem/NITR202 0
Mycobacterium_tuberculosis_str._Haarlem 0
Mycobacterium_tuberculosis_F11 0
Mycobacterium_tuberculosis_H37Rv 0
Mycobacterium_tuberculosis_CDC1551 0
Mycobacterium_bovis_BCG_str._Korea_1168P 0
Mycobacterium_bovis_BCG_str._Mexico 0
Mycobacterium_bovis_BCG_str._Tokyo_172 0
Mycobacterium_smegmatis_str._MC2_155 0
Mycobacterium_kansasii_ATCC_12478 0
Deinococcus_peraridilitoris_DSM_19664 0
Clostridium_thermocellum_DSM_1313 1
Clostridium_acidurici_9a 0
Desulfotomaculum_gibsoniae_DSM_7213 0
Coprococcus_catus_GD/7 0
Clostridium_saccharobutylicum_DSM_13864 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1
Clostridium_botulinum_H04402_065 0
Clostridium_botulinum_F_str._230613 0
Clostridium_botulinum_F_str._Langeland 0
Clostridium_botulinum_B1_str._Okra 0
Clostridium_botulinum_A2_str._Kyoto 0
Clostridium_botulinum_A_str._Hall 0
Clostridium_botulinum_A_str._ATCC_19397 0
Clostridium_acetobutylicum_DSM_1731 1
Clostridium_acetobutylicum_EA_2018 1
Carnobacterium_maltaromaticum_LMA28 1
Enterococcus_mundtii_QU_25 0
Enterococcus_faecalis_D32 1
Enterococcus_faecalis_OG1RF 1
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 0
Lactobacillus_johnsonii_NCC_533 0
Lactobacillus_reuteri_TD1 0
Lactobacillus_reuteri_I5007 0
Lactobacillus_reuteri_JCM_1112 0
Lactobacillus_reuteri_SD2112 0
Lactobacillus_plantarum_16 0
Lactobacillus_plantarum_ZJ316 0
Lactobacillus_plantarum_subsp._plantarum_ST-III 0
Lactobacillus_plantarum_subsp._plantarum_P-8 0
Lactobacillus_plantarum_WCFS1 0
Lactococcus_lactis_subsp._lactis_CV56 0
Lactococcus_lactis_subsp._cremoris_KW2 1
Lactococcus_lactis_subsp._cremoris_UC509.9 0
Lactococcus_lactis_subsp._cremoris_A76 0
Lactococcus_lactis_subsp._cremoris_NZ9000 1
Lactococcus_lactis_subsp._cremoris_SK11 0
Streptococcus_oligofermentans_AS_1.3089 0
Streptococcus_iniae_SF1 1
Streptococcus_parasanguinis_FW213 1
Streptococcus_agalactiae_ILRI005 0
Streptococcus_agalactiae_09mas018883 0
Streptococcus_agalactiae_GD201008-001 0
Streptococcus_agalactiae_NEM316 0
Streptococcus_agalactiae_2603V/R 0
Streptococcus_suis_ST3 1
Streptococcus_suis_D12 1
Paenibacillus_mucilaginosus_KNP414 0
Paenibacillus_mucilaginosus_K02 0
Paenibacillus_polymyxa_SC2 0
Listeria_monocytogenes_EGD_sequence 0
Listeria_monocytogenes_serotype_4b_str._LL195 0
Listeria_monocytogenes_07PF0776 0
Listeria_monocytogenes_M7 0
Listeria_monocytogenes_J1-220 0
Listeria_monocytogenes_J1816 0
Listeria_monocytogenes_SLCC2376 0
Listeria_monocytogenes_SLCC5850 0
Listeria_monocytogenes_ATCC_19117 0
Listeria_monocytogenes_L312 0
Listeria_monocytogenes_SLCC2479 0
Listeria_monocytogenes_SLCC7179 0
Listeria_monocytogenes_SLCC2540 0
Listeria_monocytogenes_SLCC2378 0
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 0
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 0
Listeria_monocytogenes_serotype_7_str._SLCC2482 0
Listeria_monocytogenes_08-5578 0
Listeria_monocytogenes_08-5923 0
Listeria_monocytogenes_L99 0
Listeria_monocytogenes_HCC23 0
Listeria_monocytogenes_10403S 0
Listeria_monocytogenes_J0161 0
Listeria_monocytogenes_Finland_1998 0
Listeria_monocytogenes_FSL_R2-561 0
Listeria_monocytogenes_serotype_4b_str._F2365 0
Listeria_monocytogenes_EGD-e 0
Geobacillus_sp._Y4.1MC1 0
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 1
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 0
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 1
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 1
Bacillus_amyloliquefaciens_LFB112 1
Bacillus_amyloliquefaciens_CC178 1
Bacillus_amyloliquefaciens_Y2 1
Bacillus_amyloliquefaciens_IT-45 1
Bacillus_amyloliquefaciens_XH7 1
Bacillus_amyloliquefaciens_LL3 1
Bacillus_amyloliquefaciens_TA208 1
Bacillus_amyloliquefaciens_DSM_7 1
Bacillus_licheniformis_9945A 0
Bacillus_subtilis_PY79 1
Bacillus_subtilis_XF-1 1
Bacillus_subtilis_QB928 1
Bacillus_subtilis_BSn5 1
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1
Bacillus_subtilis_subsp._natto_BEST195 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 1
Bacillus_toyonensis_BCT-7112 1
Bacillus_thuringiensis_HD-771 1
Bacillus_thuringiensis_HD-789 1
Bacillus_thuringiensis_MC28 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 0
Bacillus_thuringiensis_YBT-1518 0
Bacillus_thuringiensis_Bt407 0
Bacillus_thuringiensis_serovar_konkukian_str._97-27 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1
Bacillus_thuringiensis_BMB171 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 0
Bacillus_cereus_B4264 1
Bacillus_cereus_G9842 1
Bacillus_cereus_F837/76 0
Bacillus_megaterium_WSH-002 0
Bacillus_megaterium_QM_B1551 0
Staphylococcus_aureus_subsp._aureus_MSHR1132 1
Staphylococcus_lugdunensis_N920143 0
Staphylococcus_aureus_CA-347 1
Staphylococcus_aureus_Bmb9393 1
Staphylococcus_aureus_M1 1
Staphylococcus_aureus_08BA02176 1
Staphylococcus_aureus_04-02981 1
Staphylococcus_aureus_RF122 1
Staphylococcus_aureus_subsp._aureus_Z172 1
Staphylococcus_aureus_subsp._aureus_6850 1
Staphylococcus_aureus_subsp._aureus_SA957 1
Staphylococcus_aureus_subsp._aureus_CN1 1
Staphylococcus_aureus_subsp._aureus_SA40 1
Staphylococcus_aureus_subsp._aureus_11819-97 1
Staphylococcus_aureus_subsp._aureus_M013 1
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 1
Staphylococcus_aureus_subsp._aureus_VC40 1
Staphylococcus_aureus_subsp._aureus_T0131 1
Staphylococcus_aureus_subsp._aureus_LGA251 1
Staphylococcus_aureus_subsp._aureus_ECT-R_2 1
Staphylococcus_aureus_subsp._aureus_JKD6159 1
Staphylococcus_aureus_subsp._aureus_ED133 1
Staphylococcus_aureus_subsp._aureus_ED98 1
Staphylococcus_aureus_subsp._aureus_TW20 1
Staphylococcus_aureus_subsp._aureus_55/2053 1
Staphylococcus_aureus_subsp._aureus_TCH60 1
Staphylococcus_aureus_subsp._aureus_str._JKD6008 1
Staphylococcus_aureus_subsp._aureus_71193 1
Staphylococcus_aureus_subsp._aureus_S0385 1
Staphylococcus_aureus_subsp._aureus_Mu3 1
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 1
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 1
Staphylococcus_aureus_subsp._aureus_JH9 1
Staphylococcus_aureus_subsp._aureus_MSSA476 1
Staphylococcus_aureus_subsp._aureus_MRSA252 1
Staphylococcus_aureus_subsp._aureus_MW2 1
Staphylococcus_aureus_subsp._aureus_N315 1
Staphylococcus_aureus_subsp._aureus_Mu50 1
Staphylococcus_aureus_subsp._aureus_COL 1
Staphylococcus_aureus_subsp._aureus_NCTC_8325 1
Bacteroides_fragilis_638R 1
Bacteroides_fragilis_NCTC_9343 1
Chlamydia_psittaci_WC 0
Chlamydia_psittaci_M56 0
Singulisphaera_acidiphila_DSM_18658 0
Borrelia_afzelii_HLJ01 0
Treponema_pallidum_str._Fribourg-Blanc 0
Treponema_pallidum_subsp._pertenue_str._Gauthier 0
Treponema_pallidum_subsp._pertenue_str._CDC2 0
Treponema_pallidum_subsp._pertenue_str._SamoaD 0
Treponema_pallidum_subsp._pallidum_str._Chicago 0
Treponema_pallidum_subsp._pallidum_DAL-1 0
Fusobacterium_nucleatum_subsp._animalis_4_8 0
Acidithiobacillus_ferrooxidans_ATCC_23270 0
Myxococcus_stipitatus_DSM_14675 0
Burkholderia_pseudomallei_MSHR305 0
Orientia_tsutsugamushi_str._Ikeda 0
Rhizobium_etli_CFN_42 0
Rhodopseudomonas_palustris_BisB5 0
Vibrio_anguillarum_Listonella_anguillarum_M3 0
Shewanella_sp._ANA-3 0
Glaciecola_psychrophila_170 0
Xanthomonas_campestris_pv._vesicatoria_str._85-10 0
Yersinia_pseudotuberculosis_PB1/+ 0
Yersinia_pseudotuberculosis_YPIII 0
Yersinia_pseudotuberculosis_IP_32953 0
Buchnera_aphidicola_str._Bp_(Baizongia_pistaciae) 0
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 0
Escherichia_coli_ABU_83972 0
Sulfolobus_solfataricus_98/2 0
Candidatus_Methanomethylophilus_alvus_Mx1201 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   18
Pan_troglodytes_69_2.1.4   (Chimpanzee)   17
Gorilla_gorilla_69_3.1   (Western gorilla)   23
Pongo_abelii_69_2   (Sumatran orangutan)   23
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   17
Macaca_mulatta_69_1   (Rhesus monkey)   32
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   23
Otolemur_garnettii_69_3   (Small-eared galago)   19
Microcebus_murinus_69_1   (Gray mouse lemur)   13
Rattus_norvegicus_69_3.4   (Norway rat)   39
Mus_musculus_69_38   (House mouse)   24
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   12
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   20
Cavia_porcellus_69_3   (Domestic guinea pig)   15
Oryctolagus_cuniculus_69_2   (Rabbit)   31
Ochotona_princeps_69   (American pika)   11
Tupaia_belangeri_69   (Northern tree shrew)   14
Sus_scrofa_69_10.2   (Pig)   33
Bos_taurus_69_3.1   (Cattle)   25
Vicugna_pacos_69_1   (Alpaca)   9
Tursiops_truncatus_69_1   (Bottlenose dolphin)   11
Mustela_putorius_furo_69_1.0   (Domestic ferret)   20
Ailuropoda_melanoleuca_69_1   (Giant panda)   24
Canis_familiaris_69_3.1   (Dog)   16
Felis_catus_69   (Domestic cat)   13
Equus_caballus_69_2   (Horse)   19
Myotis_lucifugus_69_2.0   (Little brown bat)   27
Pteropus_vampyrus_69_1   (Large flying fox)   13
Sorex_araneus_69_1   (European shrew)   12
Erinaceus_europaeus_69   (Western European hedgehog)   14
Procavia_capensis_69_1   (Cape rock hyrax)   8
Loxodonta_africana_69_3   (African savanna elephant)   23
Echinops_telfairi_69   (Small Madagascar hedgehog)   19
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   10
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   10
Macropus_eugenii_69_1.0   (Tammar wallaby)   12
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   15
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   21
Ornithorhynchus_anatinus_69_5   (Platypus)   23
Petromyzon_marinus_69_7.0   (Sea lamprey)   12
Meleagris_gallopavo_69_2   (Turkey)   10
Gallus_gallus_69_2   (Chicken)   11
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   15
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   16
Anolis_carolinensis_69_2.0   (Green anole)   16
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   16
Latimeria_chalumnae_69_1   (Coelacanth)   18
Gadus_morhua_69_1   (Atlantic cod)   22
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   23
Takifugu_rubripes_69_4   (Torafugu)   22
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   21
Oryzias_latipes_69_1   (Japanese medaka)   26
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   27
Oreochromis_niloticus_69_1.0   (Nile tilapia)   17
Danio_rerio_69_9   (Zebrafish)   23
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   8
Ciona_intestinalis_69   (Vase tunicate)   10
Drosophila_melanogaster_69_5   (Fruit fly)   13
Caenorhabditis_elegans_69_215   (Roundworm)   13
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   6
Arabidopsis_thaliana_10   (Thale cress)   33

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   141
Homo_sapiens__(NCBI_version)   (Human)   26
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   23
Heliconius_numata__(Incomplete) 20
Loa_loa_v3.3_(Request)   (Eye worm)   16
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   21
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   12
Moniliophthora_perniciosa_FA553__(Genome_survey) 2
Encephalitozoon_intestinalis__(endoparasite) 3
Encephalitozoon_cuniculi_(endoparasite) 2
Picea_sitchensis__(Incomplete)   (Sitka spruce)   4
Lotus_japonicus__(Early_assembly) 34
Malus_x_domestica_(Duplicate)   (Apple)   41
Ricinus_communis__(Early_assembly)   (Castor bean)   20
Nicotiana_benthamiana_0.4.4_(Early_draft) 50
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   27
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   27
Phoenix_dactylifera__(Early_draft)   (Date palm)   11
Acholeplasma_laidlawii_PG-8A_(duplicate) 0
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 0
NCBI_plasmid_sequences_(Plasmids) 2
NCBI_2017_08_genome 23027
NCBI_viral_sequences_(Viral) 80
UniProt__viral_sequences_(Viral) 58
TargetDB__(Targets) 296
PDB_chains_(SCOP_1.75)_(PDB) 133
Protozoadb_2010_08_(Protozoadb) 309
Protein_Data_Bank_(all_PDB_sequenc) 1735
Core_Eukaryotic_Genes_458_(CEGMA) 23
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 3984
STRING_v9.0.5_(STRING) 1540
Uniprot_2018_03_genome 17256

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.