SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Home > SCOP hierarchy > Domain combination - 54236,46934,_gap_,101238,46934

Domain combinations for 54236,46934,_gap_,101238,46934 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54236 - Ubiquitin-like
46934 - UBA-like
101238 - XPC-binding domain
46934 - UBA-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Choloepus_hoffmanni_76_1 (Hoffmann's two-fingered sloth) 1

Latimeria_chalumnae_76_1 (Coelacanth) 2

Gadus_morhua_76_1 (Atlantic cod) 1

Danio_rerio_76_9 (Zebrafish) 1

Oikopleura_dioica 1

Drosophila_ananassae_1.3 1

Anopheles_darlingi_22 (American malaria mosquito) 1

Daphnia_pulex_ (Common water flea) 1

Schistosoma_mansoni_ 1

Amphimedon_queenslandica 1

Trichoplax_adhaerens_ 1

Conidiobolus_coronatus_NRRL28638_v1.0 1

Mortierella_verticillata_NRRL_6337_ 1

Mucor_circinelloides_ 1

Rhizomucor_miehei_CAU432_ 0

Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1

Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2

Melampsora_laricis-populina_ 1

Rhodotorula_graminis_WP1_v1.0 1

Sporobolomyces_roseus_IAM_13481_ 1

Wallemia_sebi_v1.0 1

Sphaerobolus_stellatus_v1.0 1

Coniophora_puteana 1

Hydnomerulius_pinastri_v2.0 1

Paxillus_rubicundulus_Ve08.2h10_v1.0 1

Scleroderma_citrinum_Foug_A_v1.0 1

Coprinopsis_cinerea_okayama7_130_v3 1

Pleurotus_ostreatus_ (Oyster mushroom) 1

Amanita_thiersii_Skay4041_v1.0 1

Amanita_muscaria_Koide_v1.0 (Fly agaric) 1

Galerina_marginata_v1.0 1

Hebeloma_cylindrosporum_h7_v2.0 1

Agaricus_bisporus_var._bisporus_ 1

Schizophyllum_commune_ 1

Stereum_hirsutum_FP-91666_SS1__v1.0 1

Heterobasidion_annosum_ 1

Gloeophyllum_trabeumv1.0 1

Punctularia_strigosozonata_v1.0 1

Sebacina_vermifera_MAFF_305830_v1.0 1

Fomitiporia_mediterranea_v1.0 1

Tulasnella_calospora_AL13/4D_v1.0 1

Postia_placenta_ 1

Wolfiporia_cocos_MD-104_SS10__v1.0 1

Fomitopsis_pinicolav1.0 1

Fomitopsis_pinicola_FP-58527_SS1_v3.0 1

Phanerochaete_chrysosporium_RP-78_2.1 1

Dichomitus_squalens 1

Trametes_versicolor_v1.0 1

Tremella_mesenterica_ (Witches' butter) 1

Daldinia_eschscholzii_EC12_v1.0 1

Apiospora_montagnei_NRRL_25634_v1.0 1

Magnaporthe_grisea_70-15_ 1

Podospora_anserina_ 1

Sporotrichum_thermophile_ATCC_42464_ 1

Thielavia_terrestris_NRRL_8126_ 1

Chaetomium_globosum_CBS_148.51_ 1

Neurospora_tetrasperma_ 1

Neurospora_discreta_FGSC_8579_ 1

Neurospora_crassa_OR74A_ 1

Cryphonectria_parasitica_ (Chestnut blight fungus) 1

Verticillium_albo-atrum_VaMs.102_ 1

Verticillium_dahliae_VdLs.17_ 1

Acremonium_alcalophilumv_1.0 1

Glomerella_graminicola_22 1

Fusarium_graminearum_ 1

Nectria_haematococca_mpVI_ 1

Fusarium_oxysporum_f._sp._lycopersici_4286_ 1

Fusarium_verticillioides_7600_ 1

Trichoderma_asperellum_CBS_433.97_v1.0 1

Trichoderma_atroviride_ 1

Trichoderma_citrinoviride_v1.0 1

Trichoderma_reesei_1.2 1

Trichoderma_virens_Gv29-8_ 1

Trichoderma_longibrachiatum_ATCC_18648_v1.0 1

Trichoderma_harzianum_CBS_226.95_v1.0 1

Amorphotheca_resinae_v1.0 (Creosote fungus) 1

Botrytis_cinerea_B05.10_ 1

Sclerotinia_sclerotiorum_ 1

Didymella_exigua_CBS_183.55_v1.0 1

Setosphaeria_turcica_v1.0 1

Cochliobolus_miyabeanus_ATCC_44560_v1.0 1

Cochliobolus_victoriae_FI3_v1.0 1

Cochliobolus_carbonum_26-R-13_v1.0 1

Cochliobolus_heterostrophus_ (Southern corn leaf blight pathogen) 1

Alternaria_brassicicola_ 0

Cochliobolus_lunatus_m118_v2.0 1

Pyrenophora_teres_f._teres_22 1

Pyrenophora_tritici-repentis_ 1

Stagonospora_nodorum_ 0

Mycosphaerella_graminicola_IPO323_ 1

Zasmidium_cellare_ATCC_36951_v1.0 1

Dothistroma_septosporum 1

Septoria_musiva_v1.0 1

Mycosphaerella_fijiensis_CIRAD86_ 1

Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1

Paracoccidioides_brasiliensis_Pb18_ 1

Coccidioides_posadasii_RMSCC_3488_ 1

Coccidioides_immitis_RS_ 1

Ajellomyces_dermatitidis_SLH14081_ 1

Microsporum_canis_CBS_113480_ 1

Trichophyton_verrucosum_HKI_0517_ 1

Arthroderma_benhamiae_CBS_112371_ 1

Trichophyton_tonsurans_CBS_112818_ 1

Trichophyton_rubrum_CBS_118892_ 1

Aspergillus_zonatus_v1.0 1

Penicillium_chrysogenum_Wisconsin_54-1255_ 1

Aspergillus_acidus_v1.0 1

Aspergillus_fumigatus_Af293 1

Aspergillus_brasiliensis_v1.0 1

Aspergillus_nidulans_FGSC_A4_ 1

Aspergillus_sydowii_v1.0 1

Aspergillus_versicolor_v1.0 1

Aspergillus_glaucus 1

Aspergillus_carbonarius_ITEM_5010_ 1

Neosartorya_fischeri_NRRL_181_ 1

Aspergillus_terreus_NIH2624_ 1

Aspergillus_tubingensis_v1.0 1

Aspergillus_wentii_v1.0 1

Aspergillus_oryzae_RIB40_ 1

Aspergillus_flavus_NRRL3357_ 1

Aspergillus_clavatus_NRRL_1_ 1

Penicillium_marneffei_ATCC_18224_ 1

Tuber_melanosporum_Mel28_22 1

Tuber_melanosporum_Vittad_ (Perigord truffle) 1

Hansenula_polymorpha_v2.0 1

Dekkera_bruxellensis_CBS_2499_v2.0 1

Pichia_membranifaciensv1.0 1

Candida_tanzawaensis_NRRL_Y-17324__v1.0 1

Candida_dubliniensis_CD36_ 1

Babjeviella_inositovora_NRRL_Y-12698_v1.0 1

Pichia_stipitis_CBS_6054_ 1

Candida_guilliermondii_ATCC_6260_ 1

Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1

Debaromyces_hansenii 1

Wickerhamomyces_anomalus 1

Pichia_pastoris_GS115_ 1

Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1

Yarrowia_lipolytica_CLIB122 1

Candida_lusitaniae_ATCC_42720_ 1

Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1

Candida_glabrata_CBS138 1

Kluyveromyces_thermotolerans_CBS_6340 1

Lachancea_kluyveri_ 1

Kluyveromyces_waltii 1

Ashbya_gossypii_ATCC_10895_ 1

Zygosaccharomyces_rouxii_ 1

Saccharomyces_paradoxus_MIT 1

Kluyveromyces_lactis 1

Schizosaccharomyces_cryophilus_OY26_22 1

Schizosaccharomyces_octosporus_yFS286_ 1

Schizosaccharomyces_japonicus_yFS275_ 1

Schizosaccharomyces_pombe (Fission yeast) 1

Catenaria_anguillulae_PL171_v1.0 1

Spizellomyces_punctatus_DAOM_BR117_ 1

Selaginella_moellendorffii_ 2

Pinus_taeda (Loblolly pine) 2

Eucalyptus_grandis_v201 (Rose gum) 1

Theobroma_cacao_B97-61/B2_v1 (Cacao) 2

Gossypium_raimondii_v221 11

Citrus_clementina_v165 1

Thellungiella_halophila_v173 2

Brassica_rapa_Chiifu-401_1.2 (Field mustard) 4

Capsella_rubella_v183 2

Arabidopsis_lyrata_ (Lyrate rockcress) 3

Arabidopsis_thaliana_10 (Thale cress) 4

Medicago_truncatula_ (Barrel medic) 2

Phaseolus_vulgaris_v186 (French bean) 2

Glycine_max_v109 (Soybean) 8

Cucumis_sativus_v122 (Cucumber) 2

Fragaria_vesca_ (Wild strawberry) 1

Malus_domestica_v196 (Apple) 1

Prunus_persica_v139 (Peach) 2

Linum_usitatissimum_v200 (Flax) 1

Manihot_esculenta_v147 (Cassava) 2

Populus_trichocarpa_v156 (Black cottonwood) 5

Vitis_vinifera_ (Wine grape) 1

Mimulus_guttatus_v140 (Spotted monkey flower) 4

Solanum_lycopersicum_v.2.3 (Tomato) 1

Solanum_tuberosum_ (Potato) 1

Actinidia_chinensis_Hongyang_ 1

Triticum_urartu_22 1

Triticum_aestivum_22 (Bread wheat) 3

Aegilops_tauschii_22 1

Brachypodium_distachyon_ (Stiff brome) 2

Oryza_barthii_22 (African wild rice) 1

Oryza_meridionalis_22 2

Oryza_glumaepatula_22 1

Oryza_glaberrima (African rice) 2

Oryza_punctata_22 3

Oryza_nivara_22 1

Oryza_brachyantha_22 (Malo sina) 2

Oryza_sativa_ssp._japonica_5.0 (Japanese rice) 4

Oryza_sativa_v193 (Rice) 4

Phyllostachys_heterocyclavar._pubescens (Kikko-chiku) 1

Panicum_virgatum_v202 (Switchgrass) 4

Setaria_italica_v164 (Foxtail millet) 1

Zea_mays_subsp._mays_ (Maize) 7

Zea_mays_v181 (Maize) 7

Sorghum_bicolor_ (Sorghum) 1

Musa_acuminata_22 (Wild Malaysian banana) 1

Amborella_trichopoda_22 1

Physcomitrella_patens 1

Coccomyxa_subellipsoidea_sp._C-169_v2 1

Asterochloris_sp._Cgr/DA1pho_v1.0 1

Chlorella_vulgaris_ 1

Volvox_carteri_f._nagariensis_ 1

Volvox_carteri_v199 1

Chlamydomonas_reinhardtii_4.0 1

Ostreococcus_sp._RCC809_ 1

Ostreococcus_lucimarinus_CCE9901_ 1

Bathycoccus_prasinos_ 1

Micromonas_sp._RCC299_ 1

Thecamonas_trahens_ATCC_50062_ 1

Trypanosoma_cruzi_strain_CL_Brener 1

Ectocarpus_siliculosus 1

Cryptosporidium_hominis 1

Cryptosporidium_muris 1

Plasmodium_vivax_SaI-1_7.0 1

Plasmodium_knowlesi_strain_H_ 1

Plasmodium_yoelii_ssp._yoelii_1_ 1

Plasmodium_chabaudi_ 1

Plasmodium_berghei_ANKA_ 1

Symbiodinium_minutum_clade_B1_v1.2 2

Guillardia_theta_CCMP2712_v1.0_ 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome Number

Cryptococcus_neoformans_var._grubii_H99_ 1

Cryptococcus_neoformans_B-3501A_ 1

Cryptococcus_neoformans_JEC21_ 1

Paracoccidioides_brasiliensis_Pb01_ 1

Paracoccidioides_brasiliensis_Pb03_ 1

Coccidioides_posadasii_str._Silveira_ 1

Coccidioides_immitis_RMSCC_2394_ 1

Coccidioides_immitis_H538.4_ 1

Histoplasma_capsulatum_H143 0

Histoplasma_capsulatum_H88 0

Histoplasma_capsulatum_G186AR 1

Aspergillus_fumigatus_A1163_ 1

Schizosaccharomyces_pombe_972h-_ 1

Batrachochytrium_dendrobatidis_JEL423_ 1

Batrachochytrium_dendrobatidis_JAM81_ 1

Hordeum_vulgare_22 (Domesticated barley) 1

Oryza_sativa_ssp._Indica_(Subspecies) (Long-grained rice) 2

Longest transcript per gene
Genome Number

Choloepus_hoffmanni_69_1 (Hoffmann's two-fingered sloth) 1

Latimeria_chalumnae_69_1 (Coelacanth) 2

Gadus_morhua_69_1 (Atlantic cod) 1

Danio_rerio_69_9 (Zebrafish) 1

Arabidopsis_thaliana_10 (Thale cress) 2

Others
Genome Number

Picea_sitchensis__(Incomplete) (Sitka spruce) 1

Malus_x_domestica_(Duplicate) (Apple) 1

Ricinus_communis__(Early_assembly) (Castor bean) 1

Nicotiana_benthamiana_0.4.4_(Early_draft) 3

Solanum_lycopersicum_v2.3_(Early_assembly) (Tomato) 1

TargetDB__(Targets) 3

Uniprot_2018_03_genome 12348

Protozoadb_2010_08_(Protozoadb) 10

STRING_v9.0.5_(STRING) 54

NCBI_2017_08_genome 489

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

SEARCH

BROWSE

TOOLS

ABOUT

HELP

Domain combinations for 54236,46934,_gap_,101238,46934 superfamilies in groups of genomes