SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for 54236,47031,_gap_,50729,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54236 - Ubiquitin-like
47031 - Second domain of FERM
50729 - PH domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Saccoglossus_kowalevskii_v3.0 4
Adineta_vaga 1
Crassostrea_gigas_22   (Pacific oyster)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 2
Drosophila_persimilis_1.3 1
Drosophila_suzukii 2
Drosophila_yakuba_1.3 2
Drosophila_simulans_1.3 2
Drosophila_sechellia_1.3 2
Drosophila_melanogaster_76_5   (Fruit fly)   4
Drosophila_erecta_1.3 2
Drosophila_ananassae_1.3 2
Drosophila_virilis_1.2 3
Drosophila_mojavensis_1.3 2
Strigamia_maritima_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2
Caenorhabditis_elegans_76_235   (Roundworm)   2
Hymenolepis_microstoma_ 2
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 3
Taenia_solium_   (Pork tapeworm)   2
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2

Longest transcript per gene
Genome     Number
Drosophila_melanogaster_69_5   (Fruit fly)   2
Caenorhabditis_elegans_69_215   (Roundworm)   1

Others
Genome     Number
Loa_loa_v3.3_(Request)   (Eye worm)   1
STRING_v9.0.5_(STRING) 15
NCBI_2017_08_genome 121
Uniprot_2018_03_genome 2324

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]