Domain combinations for 54452,48726,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54452 - MHC antigen-recognition domain
48726 - Immunoglobulin

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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• All genomes
• All eukaryote genomes (domain E)
• All bacterial genomes (domain B+A)
• All eubacterial genomes (domain B)
• All archaeal genomes (domain A)

Groups of genomes may be slower than individual genomes.

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Strains

Genome		Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)	(Tropical clawed frog)	41

Longest transcript per gene

Genome		Number
Homo_sapiens_69_37	(Human)	115
Pan_troglodytes_69_2.1.4	(Chimpanzee)	22
Gorilla_gorilla_69_3.1	(Western gorilla)	13
Pongo_abelii_69_2	(Sumatran orangutan)	24
Nomascus_leucogenys_69_1.0	(Northern white-cheeked gibbon)	13
Macaca_mulatta_69_1	(Rhesus monkey)	33
Callithrix_jacchus_69_3.2.1	(White-tufted-ear marmoset)	30
Otolemur_garnettii_69_3	(Small-eared galago)	22
Microcebus_murinus_69_1	(Gray mouse lemur)	11
Rattus_norvegicus_69_3.4	(Norway rat)	29
Mus_musculus_69_38	(House mouse)	22
Dipodomys_ordii_69_1	(Ord's kangaroo rat)	11
Ictidomys_tridecemlineatus_69_2	(Thirteen-lined ground squirrel)	37
Cavia_porcellus_69_3	(Domestic guinea pig)	14
Oryctolagus_cuniculus_69_2	(Rabbit)	13
Ochotona_princeps_69	(American pika)	20
Tupaia_belangeri_69	(Northern tree shrew)	14
Sus_scrofa_69_10.2	(Pig)	13
Bos_taurus_69_3.1	(Cattle)	22
Vicugna_pacos_69_1	(Alpaca)	5
Tursiops_truncatus_69_1	(Bottlenose dolphin)	7
Mustela_putorius_furo_69_1.0	(Domestic ferret)	14
Ailuropoda_melanoleuca_69_1	(Giant panda)	14
Canis_familiaris_69_3.1	(Dog)	11
Felis_catus_69	(Domestic cat)	13
Equus_caballus_69_2	(Horse)	37
Myotis_lucifugus_69_2.0	(Little brown bat)	79
Pteropus_vampyrus_69_1	(Large flying fox)	11
Sorex_araneus_69_1	(European shrew)	25
Erinaceus_europaeus_69	(Western European hedgehog)	6
Procavia_capensis_69_1	(Cape rock hyrax)	13
Loxodonta_africana_69_3	(African savanna elephant)	27
Echinops_telfairi_69	(Small Madagascar hedgehog)	10
Dasypus_novemcinctus_69_2	(Nine-banded armadillo)	12
Choloepus_hoffmanni_69_1	(Hoffmann's two-fingered sloth)	6
Macropus_eugenii_69_1.0	(Tammar wallaby)	6
Sarcophilus_harrisii_69_7.0	(Tasmanian devil)	13
Monodelphis_domestica_69_5	(Gray short-tailed opossum)	17
Ornithorhynchus_anatinus_69_5	(Platypus)	6
Meleagris_gallopavo_69_2	(Turkey)	3
Gallus_gallus_69_2	(Chicken)	11
Taeniopygia_guttata_69_3.2.4	(Zebra finch)	1
Pelodiscus_sinensis_69_1.0	(Chinese soft-shelled turtle)	8
Anolis_carolinensis_69_2.0	(Green anole)	12
Xenopus_tropicalis_69_4.2	(Tropical clawed frog)	15
Latimeria_chalumnae_69_1	(Coelacanth)	19
Tetraodon_nigroviridis_69_8	(Spotted green pufferfish)	6
Takifugu_rubripes_69_4	(Torafugu)	8
Gasterosteus_aculeatus_69_1	(Three-spined stickleback)	16
Oryzias_latipes_69_1	(Japanese medaka)	13
Xiphophorus_maculatus_69_4.4.2	(Southern platyfish)	8
Oreochromis_niloticus_69_1.0	(Nile tilapia)	39
Danio_rerio_69_9	(Zebrafish)	24

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Others

Genome		Number
Homo_sapiens_75_37_(old_version_GRC)	(Human)	274
Homo_sapiens__(NCBI_version)	(Human)	65
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)	(House mouse)	24
TargetDB__(Targets)		110
STRING_v9.0.5_(STRING)		484
NCBI_2017_08_genome		5329
Uniprot_2018_03_genome		92010
Protein_Data_Bank_(all_PDB_sequenc)		28
PDB_chains_(SCOP_1.75)_(PDB)		3
UniProt__viral_sequences_(Viral)		59
NCBI_viral_sequences_(Viral)		12

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