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  Home > SCOP hierarchy > Domain combination - 54695,_gap_,117281

Domain combinations for 54695,_gap_,117281 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

54695 - POZ domain
117281 - Kelch motif

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   52
Pan_troglodytes_76_2.1.4   (Chimpanzee)   26
Gorilla_gorilla_76_3.1   (Western gorilla)   36
Pongo_abelii_76_2   (Sumatran orangutan)   25
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   26
Papio_anubis_76   (Olive baboon)   22
Macaca_mulatta_76_1   (Rhesus monkey)   40
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   43
Otolemur_garnettii_76_3   (Small-eared galago)   27
Microcebus_murinus_76_1   (Gray mouse lemur)   16
Rattus_norvegicus_76_5.0   (Norway rat)   28
Mus_musculus_76_38   (House mouse)   42
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   24
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   25
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   20
Cavia_porcellus_76_3   (Domestic guinea pig)   29
Oryctolagus_cuniculus_76_2   (Rabbit)   26
Ochotona_princeps_76   (American pika)   23
Tupaia_belangeri_76   (Northern tree shrew)   13
Sus_scrofa_76_10.2   (Pig)   23
Bos_taurus_76_3.1   (Cattle)   21
Ovis_aries_76_3.1   (Sheep)   20
Vicugna_pacos_76_1   (Alpaca)   15
Tursiops_truncatus_76_1   (Bottlenose dolphin)   23
Mustela_putorius_furo_76_1.0   (Domestic ferret)   27
Ailuropoda_melanoleuca_76_1   (Giant panda)   30
Canis_familiaris_76_3.1   (Dog)   27
Felis_catus_76_6.2   (Domestic cat)   26
Equus_caballus_76_2   (Horse)   30
Myotis_lucifugus_76_2.0   (Little brown bat)   25
Pteropus_vampyrus_76_1   (Large flying fox)   25
Sorex_araneus_76_1   (European shrew)   19
Erinaceus_europaeus_76   (Western European hedgehog)   17
Procavia_capensis_76_1   (Cape rock hyrax)   17
Loxodonta_africana_76_3   (African savanna elephant)   34
Echinops_telfairi_76   (Small Madagascar hedgehog)   20
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   26
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   18
Macropus_eugenii_76_1.0   (Tammar wallaby)   19
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   30
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   26
Ornithorhynchus_anatinus_76_5   (Platypus)   23
Saccoglossus_kowalevskii_v3.0 29
Petromyzon_marinus_76_7.0   (Sea lamprey)   14
Meleagris_gallopavo_76_2   (Turkey)   21
Gallus_gallus_76_4   (Chicken)   24
Anas_platyrhynchos_76_1.0   (Mallard)   30
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   30
Ficedula_albicollis_76_1.0   (Collared flycatcher)   28
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   25
Anolis_carolinensis_76_2.0   (Green anole)   34
Xenopus_laevis_   (African clawed frog)   39
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   38
Latimeria_chalumnae_76_1   (Coelacanth)   34
Lepisosteus_oculatus_76   (Spotted gar)   30
Gadus_morhua_76_1   (Atlantic cod)   32
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   43
Takifugu_rubripes_76_4   (Torafugu)   109
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   52
Oryzias_latipes_76_1   (Japanese medaka)   51
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   35
Poecilia_formosa_76   (Amazon molly)   28
Oreochromis_niloticus_76_1.0   (Nile tilapia)   41
Astyanax_mexicanus_76   (Mexican tetra)   32
Danio_rerio_76_9   (Zebrafish)   51
Oikopleura_dioica 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   17
Ciona_intestinalis_76   (Vase tunicate)   23
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   9
Adineta_vaga 8
Octopus_bimaculoides_280 17
Crassostrea_gigas_22   (Pacific oyster)   15
Lottia_gigantea_   (Owl limpet)   22
Helobdella_robusta_ 7
Capitella_sp._I_ 107
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2
Heliconius_melpomene_   (Postman butterfly)   1
Bombyx_mori_   (Domestic silkworm)   2
Nasonia_vitripennis_   (Jewel wasp)   3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   14
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Drosophila_grimshawi_1.3 2
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 2
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   3
Drosophila_erecta_1.3 1
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3
Acyrthosiphon_pisum_   (Pea aphid)   26
Rhodnius_prolixus_22 5
Daphnia_pulex_   (Common water flea)   1
Strigamia_maritima_22 15
Sarcoptes_scabiei 0
Tetranychus_urticae_   (Two-spotted spider mite)   2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   8
Pristionchus_pacificus_ 2
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Onchocerca_volvulus_22 0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   2
Caenorhabditis_briggsae_2 1
Trichinella_spiralis_22 0
Hymenolepis_microstoma_ 11
Echinococcus_multilocularis_ 3
Echinococcus_granulosus_ 3
Taenia_solium_   (Pork tapeworm)   3
Schistosoma_mansoni_ 1
Mnemiopsis_leidyi   (Sea walnut)   9
Acropora_digitifera_v1.0 30
Nematostella_vectensis_1.0   (Starlet sea anemone)   25
Hydra_vulgaris 8
Amphimedon_queenslandica 3
Trichoplax_adhaerens_ 5
Proterospongia_sp._ATCC_50818_ 0
Monosiga_brevicollis_ 0
Dictyostelium_discoideum 0
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Chlorella_vulgaris_ 0
Volvox_carteri_f._nagariensis_ 0
Volvox_carteri_v199 0
Trypanosoma_congolense_2.4 0
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Ectocarpus_siliculosus 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_arrhenomanes_ATCC_12531_22 0
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Pythium_irregulare_DAOM_BR486_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1
Phytophthora_infestans_T30-4_ 0
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   46
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   3
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2
Trypanosoma_brucei_Lister_427_v4.1 0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   27
Pan_troglodytes_69_2.1.4   (Chimpanzee)   26
Gorilla_gorilla_69_3.1   (Western gorilla)   28
Pongo_abelii_69_2   (Sumatran orangutan)   25
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   24
Macaca_mulatta_69_1   (Rhesus monkey)   24
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   22
Otolemur_garnettii_69_3   (Small-eared galago)   27
Microcebus_murinus_69_1   (Gray mouse lemur)   16
Rattus_norvegicus_69_3.4   (Norway rat)   26
Mus_musculus_69_38   (House mouse)   27
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   24
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   25
Cavia_porcellus_69_3   (Domestic guinea pig)   29
Oryctolagus_cuniculus_69_2   (Rabbit)   27
Ochotona_princeps_69   (American pika)   23
Tupaia_belangeri_69   (Northern tree shrew)   13
Sus_scrofa_69_10.2   (Pig)   21
Bos_taurus_69_3.1   (Cattle)   21
Vicugna_pacos_69_1   (Alpaca)   15
Tursiops_truncatus_69_1   (Bottlenose dolphin)   23
Mustela_putorius_furo_69_1.0   (Domestic ferret)   27
Ailuropoda_melanoleuca_69_1   (Giant panda)   27
Canis_familiaris_69_3.1   (Dog)   24
Felis_catus_69   (Domestic cat)   14
Equus_caballus_69_2   (Horse)   27
Myotis_lucifugus_69_2.0   (Little brown bat)   25
Pteropus_vampyrus_69_1   (Large flying fox)   25
Sorex_araneus_69_1   (European shrew)   19
Erinaceus_europaeus_69   (Western European hedgehog)   17
Procavia_capensis_69_1   (Cape rock hyrax)   17
Loxodonta_africana_69_3   (African savanna elephant)   25
Echinops_telfairi_69   (Small Madagascar hedgehog)   20
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   15
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   18
Macropus_eugenii_69_1.0   (Tammar wallaby)   19
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   24
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   25
Ornithorhynchus_anatinus_69_5   (Platypus)   18
Petromyzon_marinus_69_7.0   (Sea lamprey)   13
Meleagris_gallopavo_69_2   (Turkey)   21
Gallus_gallus_69_2   (Chicken)   31
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   30
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   24
Anolis_carolinensis_69_2.0   (Green anole)   32
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   32
Latimeria_chalumnae_69_1   (Coelacanth)   29
Gadus_morhua_69_1   (Atlantic cod)   29
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   40
Takifugu_rubripes_69_4   (Torafugu)   29
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   34
Oryzias_latipes_69_1   (Japanese medaka)   33
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   35
Oreochromis_niloticus_69_1.0   (Nile tilapia)   38
Danio_rerio_69_9   (Zebrafish)   37
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   6
Ciona_intestinalis_69   (Vase tunicate)   21
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   2

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   59
Homo_sapiens__(NCBI_version)   (Human)   34
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   26
Loa_loa_v3.3_(Request)   (Eye worm)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
Uniprot_2018_03_genome 35646
Protozoadb_2010_08_(Protozoadb) 0
NCBI_2017_08_genome 11882
NCBI_viral_sequences_(Viral) 52
TargetDB__(Targets) 36
UniProt__viral_sequences_(Viral) 105
STRING_v9.0.5_(STRING) 1031

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.