SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 55031,53187 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55031 - Bacterial exopeptidase dimerisation domain
53187 - Zn-dependent exopeptidases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Ornithorhynchus_anatinus_76_5   (Platypus)   2
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1
Drosophila_suzukii 0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Caenorhabditis_japonica_ 1
Taenia_solium_   (Pork tapeworm)   1
Hydra_vulgaris 1
Hydnomerulius_pinastri_v2.0 0
Pisolithus_microcarpus_441_v1.0 0
Candida_albicans_SC5314 1
Saccharomyces_mikatae_MIT 0
Pinus_taeda   (Loblolly pine)   2
Picea_abies   (Norway spruce)   1
Citrus_sinensis_v154   (Sweet orange)   0
Medicago_truncatula_   (Barrel medic)   1
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   2
Manihot_esculenta_v147   (Cassava)   1
Vitis_vinifera_   (Wine grape)   0
Solanum_tuberosum_   (Potato)   1
Aquilegia_coerulea_v195 3
Triticum_urartu_22 0
Aegilops_tauschii_22 1
Oryza_barthii_22   (African wild rice)   0
Oryza_glumaepatula_22 0
Oryza_nivara_22 0
Amborella_trichopoda_22 3
Physcomitrella_patens 1
Volvox_carteri_v199 1
Pythium_arrhenomanes_ATCC_12531_22 0
Phytophthora_infestans_T30-4_ 1
Synechococcus_elongatus_PCC_7942 1
Onion_yellows_phytoplasma_OY-M 1
Renibacterium_salmoninarum_ATCC_33209 1
butyrate-producing_bacterium_SS3/4 1
Myxococcus_fulvus_HW-1 1
Acidovorax_citrulli_AAC00-1 1

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Strains
Genome     Number
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Corynebacterium_maris_DSM_45190 1
Streptococcus_thermophilus_CNRZ1066 1
Streptococcus_thermophilus_LMG_18311 1
Listeria_monocytogenes_N53-1 1
Listeria_monocytogenes_La111 1
Shewanella_baltica_OS155 1
Sulfolobus_islandicus_L.D.8.5 1

Longest transcript per gene
Genome     Number
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 1
Malus_x_domestica_(Duplicate)   (Apple)   2
Phoenix_dactylifera__(Early_draft)   (Date palm)   1
STRING_v9.0.5_(STRING) 11
TargetDB__(Targets) 1
NCBI_2017_08_genome 180
Uniprot_2018_03_genome 1371

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