SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 55088 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55088 - Methyl-coenzyme M reductase subunits

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Pongo_abelii_76_2   (Sumatran orangutan)   0
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Papio_anubis_76   (Olive baboon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   0
Saccoglossus_kowalevskii_v3.0 0
Anas_platyrhynchos_76_1.0   (Mallard)   0
Danio_rerio_76_9   (Zebrafish)   0
Oikopleura_dioica 0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Echinococcus_multilocularis_ 0
Rhizopus_oryzae_RA_99-880_ 0
Sporisorium_reilianum_22 0
Melampsora_laricis-populina_ 0
Piloderma_croceum_F_1598_v1.0 0
Pleurotus_ostreatus_   (Oyster mushroom)   0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Postia_placenta_ 0
Wolfiporia_cocos_MD-104_SS10__v1.0 0
Fomitopsis_pinicolav1.0 0
Fomitopsis_pinicola_FP-58527_SS1_v3.0 0
Thielavia_terrestris_NRRL_8126_ 0
Cochliobolus_lunatus_m118_v2.0 0
Pyrenophora_tritici-repentis_ 0
Zasmidium_cellare_ATCC_36951_v1.0 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 0
Arthroderma_benhamiae_CBS_112371_ 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Candida_dubliniensis_CD36_ 0
Entamoeba_histolytica_1 0
Selaginella_moellendorffii_ 0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Medicago_truncatula_   (Barrel medic)   0
Glycine_max_v109   (Soybean)   0
Fragaria_vesca_   (Wild strawberry)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Vitis_vinifera_   (Wine grape)   0
Triticum_urartu_22 0
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_brachyantha_22   (Malo sina)   0
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   0
Amborella_trichopoda_22 0
Physcomitrella_patens 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_ultimum_v1.7-2 0
Phytophthora_infestans_T30-4_ 0
Tetrahymena_thermophila_SB210_1_ 0
Modestobacter_marinus 0
Gordonia_sp._KTR9 0
Arthrobacter_chlorophenolicus_A6 0
Rothia_mucilaginosa_DY-18 0
Micrococcus_luteus_NCTC_2665 0
Herpetosiphon_aurantiacus_DSM_785 0
Chloroflexus_sp._MS-G 0
Deinococcus_radiodurans_R1 0
Finegoldia_magna_ATCC_29328 0
butyrate-producing_bacterium_SS3/4 0
Lactobacillus_kefiranofaciens_ZW3 0
Lactobacillus_helveticus_DPC_4571 0
Streptococcus_oralis_Uo5 0
Solibacillus_silvestris_StLB046 0
Gemmatimonas_aurantiaca_T-27 0
Ornithobacterium_rhinotracheale_DSM_15997 0
Desulfococcus_oleovorans_Hxd3 0
Advenella_kashmirensis_WT001 0
Pseudovibrio_sp._FO-BEG1 0
Roseobacter_denitrificans_OCh_114 0
Anaplasma_phagocytophilum_HZ 0
Methylobacterium_radiotolerans_JCM_2831 0
Agrobacterium_radiobacter_K84 0
Alteromonas_sp._SN2 0
Serratia_sp._ATCC_39006 0
Shigella_sonnei_Ss046 0
Pseudomonas_protegens_Pf-5 0
Thermoproteus_tenax_Kra_1 0
Methanocella_arvoryzae_MRE50 1
Methanocella_conradii_HZ254 1
Methanocella_paludicola_SANAE 1
Methanosaeta_harundinacea_6Ac 1
Methanosaeta_thermophila_PT 1
Methanosaeta_concilii_GP6 1
Methanosalsum_zhilinae_DSM_4017 1
Methanohalobium_evestigatum_Z-7303 1
Methanococcoides_burtonii_DSM_6242 1
Methanosarcina_acetivorans_C2A 1
Methanosarcina_mazei_Go1 1
Methanosarcina_barkeri_str._Fusaro 1
Methanohalophilus_mahii_DSM_5219 1
Methanosphaerula_palustris_E1-9c 1
Methanoregula_boonei_6A8 1
Methanospirillum_hungatei_JF-1 1
Methanocorpusculum_labreanum_Z 2
Methanoplanus_petrolearius_DSM_11571 2
Methanoculleus_bourgensis_MS2 2
Methanoculleus_marisnigri_JR1 2
Methanopyrus_kandleri_AV19 2
Thermoplasmatales_archaeon_BRNA1 1
Natrinema_sp._J7-2 0
Methanotorris_igneus_Kol_5 2
Methanocaldococcus_sp._FS406-22 2
Methanocaldococcus_fervens_AG86 1
Methanocaldococcus_vulcanius_M7 2
methanocaldococcus_infernus_ME 1
Methanocaldococcus_jannaschii_DSM_2661 2
Methanothermococcus_okinawensis_IH1 1
Methanococcus_aeolicus_Nankai-3 1
Methanococcus_maripaludis_C5 1
Methanococcus_voltae_A3 1
Methanococcus_vannielii_SB 1
Methanothermus_fervidus_DSM_2088 2
Methanothermobacter_marburgensis_str._Marburg 2
Methanothermobacter_thermautotrophicus_str._Delta_H 2
Methanosphaera_stadtmanae_DSM_3091 1
Methanobrevibacter_sp._AbM4 1
Methanobrevibacter_ruminantium_M1 1
Methanobrevibacter_smithii_ATCC_35061 2
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 2

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Oscillatoria_acuminata_PCC_6304 0
Streptomyces_davawensis_JCM_4913 0
Clostridium_botulinum_B1_str._Okra 0
Clostridium_botulinum_A2_str._Kyoto 0
Enterococcus_faecalis_OG1RF 0
Lactobacillus_helveticus_R0052 0
Lactobacillus_helveticus_H10 0
Lactobacillus_helveticus_CNRZ32 0
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 0
Bdellovibrio_bacteriovorus_str._Tiberius 0
Burkholderia_ambifaria_MC40-6 0
Anaplasma_phagocytophilum_str._HZ2 0
Sinorhizobium_meliloti_BL225C 0
Rhizobium_etli_CFN_42 0
Rhizobium_etli_bv._mimosae_str._Mim1 0
Cronobacter_sakazakii_SP291 0
Shigella_sonnei_53G 0
Shigella_boydii_Sb227 0
Escherichia_coli_O104:H4_str._2009EL-2050 0
Escherichia_coli_O104:H4_str._2009EL-2071 0
Escherichia_coli_O104:H4_str._2011C-3493 0
Escherichia_coli_UMNK88 0
Escherichia_coli_55989 0
Escherichia_coli_IAI1 0
Escherichia_coli_DH1 0
Escherichia_coli_DH1 0
Escherichia_coli_HS 0
Escherichia_coli_str._K-12_substr._MDS42 0
Escherichia_coli_BW2952 0
Escherichia_coli_str._K-12_substr._MG1655 0
Escherichia_coli_str._K-12_substr._W3110 0
Escherichia_coli_str._K-12_substr._DH10B 0
Escherichia_coli_B_str._REL606 0
Methanomethylovorans_hollandica_DSM_15978 1
Methanolobus_psychrophilus_R15 1
Methanosarcina_mazei_Tuc01 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 2
Candidatus_Methanomethylophilus_alvus_Mx1201 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 1
Natronococcus_occultus_SP4 0
Methanococcus_maripaludis_X1 1
Methanococcus_maripaludis_C6 1
Methanococcus_maripaludis_C7 1
Methanococcus_maripaludis_S2 1
Methanobacterium_sp._SWAN-1 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Pongo_abelii_69_2   (Sumatran orangutan)   0
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Rattus_norvegicus_69_3.4   (Norway rat)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   0
Danio_rerio_69_9   (Zebrafish)   0
Drosophila_melanogaster_69_5   (Fruit fly)   0
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Moniliophthora_perniciosa_FA553__(Genome_survey) 0
Lotus_japonicus__(Early_assembly) 0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
NCBI_plasmid_sequences_(Plasmids) 0
UniProt__viral_sequences_(Viral) 0
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 400
NCBI_viral_sequences_(Viral) 0
NCBI_2017_08_genome 272
Uniprot_2018_03_genome 341
PDB_chains_(SCOP_1.75)_(PDB) 4
Protozoadb_2010_08_(Protozoadb) 0
TargetDB__(Targets) 0
STRING_v9.0.5_(STRING) 32
Protein_Data_Bank_(all_PDB_sequenc) 50

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