SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 55486,49899,49599,_gap_,57196,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55486 - Metalloproteases ("zincins"), catalytic domain
49899 - Concanavalin A-like lectins/glucanases
49599 - TRAF domain-like
57196 - EGF/Laminin

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   2
Oryzias_latipes_76_1   (Japanese medaka)   2
Poecilia_formosa_76   (Amazon molly)   1
Danio_rerio_76_9   (Zebrafish)   1

Longest transcript per gene
Genome     Number
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1
Oryzias_latipes_69_1   (Japanese medaka)   1
Danio_rerio_69_9   (Zebrafish)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 3
Uniprot_2018_03_genome 640
NCBI_2017_08_genome 92

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