SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 55486,89260,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55486 - Metalloproteases ("zincins"), catalytic domain
89260 - Collagen-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Monosiga_brevicollis_ 1
Niastella_koreensis_GR20-10 1
Pirellula_staleyi_DSM_6068 1
Vibrio_sp._Ex25 0

Strains
Genome     Number
Myxococcus_stipitatus_DSM_14675 0
Simiduia_agarivorans_SA1_=_DSM_21679 0

Others
Genome     Number
STRING_v9.0.5_(STRING) 1
Uniprot_2018_03_genome 174
NCBI_2017_08_genome 17
NCBI_viral_sequences_(Viral) 1

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