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  Home > SCOP hierarchy > Domain combination - 55890

Domain combinations for 55890 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55890 - Sporulation response regulatory protein Spo0B

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Papio_anubis_76   (Olive baboon)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Poecilia_formosa_76   (Amazon molly)   0
Oikopleura_dioica 0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Crassostrea_gigas_22   (Pacific oyster)   0
Lottia_gigantea_   (Owl limpet)   0
Heliconius_melpomene_   (Postman butterfly)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   0
Meloidogyne_hapla_ 0
Caenorhabditis_remanei_ 0
Schistosoma_mansoni_ 0
Thelohanellus_kitauei 0
Hydra_vulgaris 0
Amphimedon_queenslandica 0
Conidiobolus_coronatus_NRRL28638_v1.0 0
Rhizomucor_miehei_CAU432_ 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Sporobolomyces_roseus_IAM_13481_ 0
Sphaerobolus_stellatus_v1.0 0
Serpula_lacrymans_var._lacrymans_S7.9_ 0
Galerina_marginata_v1.0 0
Agaricus_bisporus_var._bisporus_ 0
Punctularia_strigosozonata_v1.0 0
Podospora_anserina_ 0
Trichoderma_atroviride_ 0
Trichoderma_harzianum_CBS_226.95_v1.0 0
Pyrenophora_teres_f._teres_22 0
Pyrenophora_tritici-repentis_ 0
Mycosphaerella_graminicola_IPO323_ 0
Candida_tropicalis_MYA-3404_ 0
Candida_albicans_SC5314 0
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 0
Pichia_pastoris_GS115_ 0
Vanderwaltozyma_polyspora_DSM_70294_ 0
Zygosaccharomyces_rouxii_ 0
Entamoeba_dispar_1.2 0
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Phaseolus_vulgaris_v186   (French bean)   0
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Actinidia_chinensis_Hongyang_ 0
Panicum_virgatum_v202   (Switchgrass)   0
Musa_balbisiana   (Balbis banana)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Pythium_irregulare_DAOM_BR486_22 0
Fragilariopsis_cylindrus 0
Perkinsus_marinus_ATCC_50983_ 0
Paramecium_tetraurelia_ 0
Tetrahymena_thermophila_SB210_1_ 0
Cryptosporidium_hominis 0
Cryptosporidium_muris 0
Theileria_parva__ 0
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Naegleria_gruberi_ 0
Trichomonas_vaginalis_ 0
Acaryochloris_marina_MBIC11017 0
Synechocystis_sp._PCC_6803 0
Halothece_sp._PCC_7418 0
Anabaena_variabilis_ATCC_29413 0
Mycoplasma_leachii_99/014/6 0
Mycoplasma_crocodyli_MP145 0
Mycoplasma_pulmonis_UAB_CTIP 0
Conexibacter_woesei_DSM_14684 0
Eggerthella_sp._YY7918 0
Eggerthella_lenta_DSM_2243 0
Acidimicrobium_ferrooxidans_DSM_10331 0
Nakamurella_multipartita_DSM_44233 0
Blastococcus_saxobsidens_DD2 0
Geodermatophilus_obscurus_DSM_43160 0
Kineococcus_radiotolerans_SRS30216 0
Catenulispora_acidiphila_DSM_44928 0
Frankia_sp._EAN1pec 0
Frankia_alni_ACN14a 0
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 0
Streptosporangium_roseum_DSM_43021 0
Kitasatospora_setae_KM-6054 0
Streptomyces_coelicolor_A3(2) 0
Streptomyces_sp._PAMC26508 0
Streptomyces_flavogriseus_ATCC_33331 0
Streptomyces_sp._SirexAA-E 0
Streptomyces_griseus_subsp._griseus_NBRC_13350 0
Streptomyces_bingchenggensis_BCW-1 0
Streptomyces_violaceusniger_Tu_4113 0
Streptomyces_avermitilis_MA-4680 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 0
Streptomyces_scabiei_87.22 0
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 0
Actinosynnema_mirum_DSM_43827 0
Saccharomonospora_viridis_DSM_43017 0
Saccharopolyspora_erythraea_NRRL_2338 0
Amycolatopsis_mediterranei_U32 0
Microlunatus_phosphovorus_NM-1 0
Micromonospora_sp._L5 0
Actinoplanes_sp._N902-109 0
Actinoplanes_missouriensis_431 0
Tsukamurella_paurometabola_DSM_20162 0
Gordonia_sp._KTR9 0
Gordonia_polyisoprenivorans_VH2 0
Gordonia_bronchialis_DSM_43247 0
Rhodococcus_jostii_RHA1 0
Rhodococcus_equi_103S 0
Rhodococcus_opacus_B4 0
Rhodococcus_erythropolis_PR4 0
Nocardia_farcinica_IFM_10152 0
Amycolicicoccus_subflavus_DQS3-9A1 0
Mycobacterium_sp._JLS 0
Mycobacterium_vanbaalenii_PYR-1 0
Mycobacterium_rhodesiae_NBB3 0
Mycobacterium_gilvum_PYR-GCK 0
Mycobacterium_smegmatis_str._MC2_155 0
Corynebacterium_efficiens_YS-314 0
Corynebacterium_variabile_DSM_44702 0
Corynebacterium_glutamicum_R 0
Leifsonia_xyli_subsp._xyli_str._CTCB07 0
Microbacterium_testaceum_StLB037 0
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 0
Intrasporangium_calvum_DSM_43043 0
Arthrobacter_phenanthrenivorans_Sphe3 0
Arthrobacter_chlorophenolicus_A6 0
Arthrobacter_aurescens_TC1 0
Arthrobacter_arilaitensis_Re117 0
Kocuria_rhizophila_DC2201 0
Arthrobacter_sp._Rue61a 0
Arthrobacter_sp._FB24 0
Renibacterium_salmoninarum_ATCC_33209 0
Micrococcus_luteus_NCTC_2665 0
Bifidobacterium_bifidum_S17 0
Deinococcus_gobiensis_I-0 0
Deinococcus_deserti_VCD115 0
Deinococcus_maricopensis_DSM_21211 0
Deinococcus_geothermalis_DSM_11300 0
Megamonas_hypermegale 0
Erysipelothrix_rhusiopathiae_str._Fujisawa 0
Natranaerobius_thermophilus_JW/NM-WN-LF 0
Clostridium_clariflavum_DSM_19732 0
Clostridium_cellulolyticum_H10 0
Clostridium_thermocellum_ATCC_27405 0
Faecalibacterium_prausnitzii 0
Ruminococcus_bromii 0
Ruminococcus_albus_7 0
Thermaerobacter_marianensis_DSM_12885 1
Sulfobacillus_acidophilus_DSM_10332 1
Oscillibacter_valericigenes_Sjm18-20 0
butyrate-producing_bacterium_SS3/4 0
Candidatus_Desulforudis_audaxviator_MP104C 1
Thermincola_potens_JR 0
Pelotomaculum_thermopropionicum_SI 1
Desulfosporosinus_acidiphilus_SJ4 1
Desulfosporosinus_orientis_DSM_765 1
Dehalobacter_sp._DCA 1
Dehalobacter_sp._CF 1
Syntrophobotulus_glycolicus_DSM_8271 1
Desulfitobacterium_hafniense_Y51 1
Desulfitobacterium_dehalogenans_ATCC_51507 1
Desulfotomaculum_reducens_MI-1 1
Desulfotomaculum_acetoxidans_DSM_771 3
Desulfotomaculum_kuznetsovii_DSM_6115 1
Desulfotomaculum_carboxydivorans_CO-1-SRB 1
Desulfotomaculum_ruminis_DSM_2154 1
Eubacterium_eligens_ATCC_27750 0
Eubacterium_limosum_KIST612 0
Clostridium_difficile_630 0
Filifactor_alocis_ATCC_35896 0
Clostridium_saccharolyticum_WM1 0
Clostridium_phytofermentans_ISDg 0
Clostridium_lentocellum_DSM_5427 0
[Ruminococcus]_obeum 0
[Ruminococcus]_torques 0
Eubacterium_rectale_M104/1 0
Eubacterium_rectale_ATCC_33656 0
Roseburia_hominis_A2-183 0
Roseburia_intestinalis 0
Butyrivibrio_fibrisolvens 0
Syntrophothermus_lipocalidus_DSM_12680 1
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 1
Heliobacterium_modesticaldum_Ice1 1
Alkaliphilus_oremlandii_OhILAs 0
Alkaliphilus_metalliredigens_QYMF 1
Clostridium_sp._BNL1100 0
Clostridium_novyi_NT 1
Clostridium_ljungdahlii_DSM_13528 0
Clostridium_beijerinckii_NCIMB_8052 0
Clostridium_tetani_E88 1
Clostridium_perfringens_ATCC_13124 0
Clostridium_cellulovorans_743B 0
Clostridium_botulinum_A_str._ATCC_3502 0
Clostridium_acetobutylicum_ATCC_824 0
Thermosediminibacter_oceani_DSM_16646 1
Thermoanaerobacterium_xylanolyticum_LX-11 1
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 1
Tepidanaerobacter_acetatoxydans_Re1 0
Thermoanaerobacter_tengcongensis_MB4 1
Carboxydothermus_hydrogenoformans_Z-2901 1
Moorella_thermoacetica_ATCC_39073 1
Ammonifex_degensii_KC4 1
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 1
Thermoanaerobacter_pseudethanolicus_ATCC_33223 1
Thermoanaerobacter_sp._X514 1
Thermoanaerobacter_italicus_Ab9 1
Thermoanaerobacter_wiegelii_Rt8.B1 1
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 1
Acetohalobium_arabaticum_DSM_5501 0
Halothermothrix_orenii_H_168 0
Aerococcus_urinae_ACS-120-V-Col10a 0
Tetragenococcus_halophilus_NBRC_12172 0
Melissococcus_plutonius_DAT561 0
Enterococcus_sp._7L76 0
Enterococcus_hirae_ATCC_9790 0
Enterococcus_faecium_Aus0004 0
Enterococcus_faecalis_62 0
Leuconostoc_sp._C2 0
Leuconostoc_kimchii_IMSNU_11154 0
Leuconostoc_gasicomitatum_LMG_18811 0
Lactobacillus_casei_ATCC_334 0
Lactobacillus_rhamnosus_Lc_705 0
Lactobacillus_plantarum_JDM1 0
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_BAA-365 0
Lactobacillus_brevis_ATCC_367 0
Lactobacillus_acidophilus_30SC 0
Streptococcus_uberis_0140J 0
Streptococcus_parauberis_KCTC_11537 0
Streptococcus_parasanguinis_ATCC_15912 0
Streptococcus_pyogenes_str._Manfredo 0
Streptococcus_agalactiae_A909 0
Streptococcus_salivarius_57.I 0
Exiguobacterium_sp._MH3 1
Exiguobacterium_sp._AT1b 1
Exiguobacterium_sibiricum_255-15 1
Kyrpidia_tusciae_DSM_2912 0
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 1
Brevibacillus_brevis_NBRC_100599 1
Paenibacillus_sp._JDR-2 0
Paenibacillus_terrae_HPL-003 0
Paenibacillus_mucilaginosus_3016 0
Paenibacillus_polymyxa_M1 0
Bacillus_selenitireducens_MLS10 1
Listeria_welshimeri_serovar_6b_str._SLCC5334 0
Listeria_innocua_Clip11262 0
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 0
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 0
Solibacillus_silvestris_StLB046 1
Geobacillus_thermoglucosidasius_C56-YS93 1
Lysinibacillus_sphaericus_C3-41 1
Oceanobacillus_iheyensis_HTE831 1
Anoxybacillus_flavithermus_WK1 1
Geobacillus_thermoleovorans_CCB_US3_UF5 1
Geobacillus_kaustophilus_HTA426 1
Geobacillus_sp._GHH01 1
Geobacillus_sp._WCH70 1
Geobacillus_thermodenitrificans_NG80-2 1
Halobacillus_halophilus_DSM_2266 1
Bacillus_sp._JS 1
Bacillus_sp._1NLA3E 1
Bacillus_amyloliquefaciens_FZB42 1
Bacillus_atrophaeus_1942 1
Bacillus_subtilis_subsp._subtilis_str._168 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_halodurans_C-125 1
Bacillus_weihenstephanensis_KBAB4 1
Bacillus_thuringiensis_str._Al_Hakam 1
Bacillus_cereus_03BB102 1
Bacillus_anthracis_str._A0248 1
Bacillus_pseudofirmus_OF4 1
Bacillus_clausii_KSM-K16 1
Bacillus_cellulosilyticus_DSM_2522 1
Bacillus_pumilus_SAFR-032 1
Bacillus_megaterium_DSM_319 1
Bacillus_coagulans_2-6 1
Macrococcus_caseolyticus_JCSC5402 1
Staphylococcus_pseudintermedius_HKU10-03 0
Candidatus_Cloacamonas_acidaminovorans 0
Belliella_baltica_DSM_15883 0
Odoribacter_splanchnicus_DSM_20712 0
Bacteroides_vulgatus_ATCC_8482 0
Solitalea_canadensis_DSM_3403 0
Owenweeksia_hongkongensis_DSM_17368 0
Flavobacterium_indicum_GPTSA100-9 0
Flavobacterium_psychrophilum_JIP02/86 0
Thermovirga_lienii_DSM_17291 0
Aminobacterium_colombiense_DSM_12261 0
Turneriella_parva_DSM_21527 0
Spirochaeta_smaragdinae_DSM_11293 0
Treponema_denticola_ATCC_35405 0
Spirochaeta_africana_DSM_8902 0
Thermodesulfobacterium_sp._OPB45 0
Desulfurispirillum_indicum_S5 0
Denitrovibrio_acetiphilus_DSM_12809 0
Kosmotoga_olearia_TBF_19.5.1 0
Leptotrichia_buccalis_C-1013-b 0
Ilyobacter_polytropus_DSM_2926 0
Nautilia_profundicola_AmH 0
Sulfurospirillum_barnesii_SES-3 0
Campylobacter_sp._03-427 0
Campylobacter_fetus_subsp._fetus_82-40 0
Helicobacter_cinaedi_PAGU611 0
Syntrophobacter_fumaroxidans_MPOB 0
Desulfomicrobium_baculatum_DSM_4028 0
Desulfovibrio_aespoeensis_Aspo-2 0
Rubrivivax_gelatinosus_IL144 0
Rickettsia_akari_str._Hartford 0
Saccharophagus_degradans_2-40 0
Tolumonas_auensis_DSM_9187 0
Aeromonas_veronii_B565 0
Aeromonas_salmonicida_subsp._salmonicida_A449 0
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 0
Vibrio_fischeri_MJ11 0
Vibrio_sp._Ex25 0
Vibrio_harveyi_ATCC_BAA-1116 0
Vibrio_parahaemolyticus_RIMD_2210633 0
Vibrio_splendidus_LGP32 0
Vibrio_anguillarum_775 0
Vibrio_furnissii_NCTC_11218 0
Vibrio_vulnificus_MO6-24/O 0
Vibrio_cholerae_O395 0
Photobacterium_profundum_SS9 0
Shewanella_baltica_OS185 0
Shewanella_sp._MR-4 0
Shewanella_violacea_DSS12 0
Shewanella_frigidimarina_NCIMB_400 0
Shewanella_putrefaciens_CN-32 0
Marinobacter_adhaerens_HP15 0
Marinobacter_sp._BSs20148 0
Marinobacter_hydrocarbonoclasticus_ATCC_49840 0
Marinobacter_aquaeolei_VT8 0
Marinomonas_sp._MWYL1 0
Marinomonas_mediterranea_MMB-1 0
Chromohalobacter_salexigens_DSM_3043 0
Providencia_stuartii_MRSN_2154 0
Edwardsiella_ictaluri_93-146 0
Edwardsiella_tarda_EIB202 0
Rahnella_sp._Y9602 0
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 0
Yersinia_enterocolitica_subsp._enterocolitica_8081 0
Serratia_sp._AS12 0
Serratia_sp._ATCC_39006 0
Serratia_plymuthica_AS9 0
Serratia_proteamaculans_568 0
Dickeya_dadantii_Ech703 0
Dickeya_zeae_Ech1591 0
Pectobacterium_wasabiae_WPP163 0
Pectobacterium_sp._SCC3193 0
Pectobacterium_atrosepticum_SCRI1043 0
Pectobacterium_carotovorum_subsp._carotovorum_PC1 0
Pantoea_sp._At-9b 0
Pantoea_vagans_C9-1 0
Pantoea_ananatis_LMG_20103 0
Erwinia_tasmaniensis_Et1/99 0
Erwinia_sp._Ejp617 0
Erwinia_billingiae_Eb661 0
Erwinia_pyrifoliae_Ep1/96 0
Erwinia_amylovora_ATCC_49946 0
Escherichia_blattae_DSM_4481 0
Cronobacter_turicensis_z3032 0
Cronobacter_sakazakii_ES15 0
Enterobacteriaceae_bacterium_strain_FGI_57 0
Shigella_sonnei_Ss046 0
Shigella_flexneri_5_str._8401 0
Shigella_dysenteriae_Sd197 0
Salmonella_bongori_NCTC_12419 0
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 0
Klebsiella_oxytoca_E718 0
Klebsiella_variicola_At-22 0
Klebsiella_pneumoniae_NTUH-K2044 0
Enterobacter_aerogenes_KCTC_2190 0
Escherichia_fergusonii_ATCC_35469 0
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 0
Enterobacter_sp._R4-368 0
Enterobacter_sp._638 0
Enterobacter_asburiae_LF7a 0
Enterobacter_cloacae_subsp._dissolvens_SDM 0
Citrobacter_rodentium_ICC168 0
Citrobacter_koseri_ATCC_BAA-895 0
Pyrobaculum_aerophilum_str._IM2 0
Methanosphaerula_palustris_E1-9c 0
Methanoregula_boonei_6A8 0
Methanospirillum_hungatei_JF-1 0
Methanoculleus_marisnigri_JR1 0
Archaeoglobus_fulgidus_DSM_4304 0
Methanobrevibacter_sp._AbM4 0
Acholeplasma_laidlawii_PG-8A 0

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Strains
Genome     Number
Coccidioides_posadasii_str._Silveira_ 0
Candida_albicans_WO-1_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Hordeum_vulgare_22   (Domesticated barley)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Plasmodium_falciparum_Dd2_ 0
Synechocystis_sp._PCC_6803_substr._PCC-P 0
Synechocystis_sp._PCC_6803_substr._PCC-N 0
Synechocystis_sp._PCC_6803_substr._GT-I 0
Synechocystis_sp._PCC_6803 0
Prochlorococcus_marinus_str._MIT_9312 0
Cyanothece_sp._PCC_7425 0
Cylindrospermum_stagnale_PCC_7417 0
Mesoplasma_florum_W37 0
Mycoplasma_leachii_PG50 0
Frankia_sp._EuI1c 0
Nocardiopsis_alba_ATCC_BAA-2165 0
Streptomyces_albus_J1074 0
Streptomyces_rapamycinicus_NRRL_5491 0
Streptomyces_davawensis_JCM_4913 0
Streptomyces_fulvissimus_DSM_40593 0
Streptomyces_venezuelae_ATCC_10712 0
Streptomyces_collinus_Tu_365 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 0
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 0
Saccharothrix_espanaensis_DSM_44229 0
Amycolatopsis_mediterranei_RB 0
Amycolatopsis_mediterranei_S699 0
Amycolatopsis_mediterranei_S699 0
Amycolatopsis_orientalis_HCCB10007 0
Actinoplanes_friuliensis_DSM_7358 0
Rhodococcus_pyridinivorans_SB3094 0
Rhodococcus_erythropolis_CCM2595 0
Nocardia_brasiliensis_ATCC_700358 0
Mycobacterium_sp._KMS 0
Mycobacterium_sp._MCS 0
Mycobacterium_gilvum_Spyr1 0
Mycobacterium_smegmatis_str._MC2_155 0
Mycobacterium_kansasii_ATCC_12478 0
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 0
Corynebacterium_glutamicum_MB001 0
Corynebacterium_glutamicum_ATCC_13032 0
Corynebacterium_glutamicum_ATCC_13032 0
Corynebacterium_glutamicum_ATCC_13032 0
Leifsonia_xyli_subsp._cynodontis_DSM_46306 0
Clavibacter_michiganensis_subsp._sepedonicus 0
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 0
Bifidobacterium_bifidum_PRL2010 0
Bifidobacterium_bifidum_BGN4 0
Deinococcus_peraridilitoris_DSM_19664 0
Thermus_thermophilus_HB8 0
Erysipelothrix_rhusiopathiae_SY1027 0
Eubacterium_siraeum_V10Sc8a 0
Clostridium_thermocellum_DSM_1313 0
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 0
Sulfobacillus_acidophilus_TPY 1
Clostridium_acidurici_9a 1
Desulfosporosinus_meridiei_DSM_13257 1
Desulfitobacterium_dichloroeliminans_LMG_P-21439 1
Desulfitobacterium_hafniense_DCB-2 1
Desulfotomaculum_gibsoniae_DSM_7213 1
Clostridium_difficile_BI1 0
Clostridium_difficile_R20291 0
Clostridium_difficile_CD196 0
Coprococcus_catus_GD/7 0
Roseburia_intestinalis_XB6B4 0
Clostridium_saccharobutylicum_DSM_13864 0
Clostridium_autoethanogenum_DSM_10061 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 0
Clostridium_tetani_genome_12124569 2
Clostridium_perfringens_SM101 0
Clostridium_perfringens_str._13 0
Clostridium_pasteurianum_BC1 0
Clostridium_botulinum_H04402_065 0
Clostridium_botulinum_BKT015925 1
Clostridium_botulinum_F_str._230613 0
Clostridium_botulinum_F_str._Langeland 0
Clostridium_botulinum_B1_str._Okra 0
Clostridium_botulinum_A2_str._Kyoto 0
Clostridium_botulinum_A3_str._Loch_Maree 0
Clostridium_botulinum_A_str._Hall 0
Clostridium_botulinum_A_str._ATCC_19397 0
Clostridium_acetobutylicum_DSM_1731 0
Clostridium_acetobutylicum_EA_2018 0
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1
Thermoanaerobacterium_thermosaccharolyticum_M0795 1
Thermacetogenium_phaeum_DSM_12270 0
Thermoanaerobacter_sp._X513 1
Carnobacterium_maltaromaticum_LMA28 0
Melissococcus_plutonius_ATCC_35311 0
Enterococcus_mundtii_QU_25 0
Enterococcus_casseliflavus_EC20 0
Enterococcus_faecium_Aus0085 0
Enterococcus_faecium_NRRL_B-2354 0
Enterococcus_faecium_DO 0
Enterococcus_faecalis_str._Symbioflor_1 0
Enterococcus_faecalis_D32 0
Enterococcus_faecalis_OG1RF 0
Enterococcus_faecalis_V583 0
Leuconostoc_gelidum_JB7 0
Lactobacillus_paracasei_subsp._paracasei_8700:2 0
Lactobacillus_casei_LOCK919 0
Lactobacillus_casei_W56 0
Lactobacillus_casei_LC2W 0
Lactobacillus_casei_BD-II 0
Lactobacillus_casei_BL23 0
Lactobacillus_casei_str._Zhang 0
Lactobacillus_rhamnosus_LOCK908 0
Lactobacillus_rhamnosus_LOCK900 0
Lactobacillus_rhamnosus_ATCC_8530 0
Lactobacillus_rhamnosus_GG 0
Lactobacillus_rhamnosus_GG 0
Lactobacillus_reuteri_TD1 0
Lactobacillus_plantarum_16 0
Lactobacillus_plantarum_ZJ316 0
Lactobacillus_plantarum_subsp._plantarum_ST-III 0
Lactobacillus_plantarum_subsp._plantarum_P-8 0
Lactobacillus_plantarum_WCFS1 0
Lactobacillus_brevis_KB290 0
Lactobacillus_acidophilus_La-14 0
Lactobacillus_acidophilus_NCFM 0
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 0
Streptococcus_iniae_SF1 0
Streptococcus_pyogenes_HSC5 0
Streptococcus_pyogenes_A20 0
Streptococcus_pyogenes_MGAS1882 0
Streptococcus_pyogenes_MGAS15252 0
Streptococcus_pyogenes_Alab49 0
Streptococcus_pyogenes_MGAS10750 0
Streptococcus_pyogenes_MGAS10270 0
Streptococcus_pyogenes_MGAS2096 0
Streptococcus_pyogenes_MGAS9429 0
Streptococcus_pyogenes_MGAS6180 0
Streptococcus_pyogenes_NZ131 0
Streptococcus_pyogenes_MGAS8232 0
Streptococcus_pyogenes_MGAS10394 0
Streptococcus_pyogenes_MGAS315 0
Streptococcus_pyogenes_SSI-1 0
Streptococcus_pyogenes_M1_476 0
Streptococcus_pyogenes_MGAS5005 0
Streptococcus_pyogenes_M1_GAS 0
Streptococcus_agalactiae_ILRI112 0
Streptococcus_agalactiae_ILRI005 0
Streptococcus_agalactiae_09mas018883 0
Streptococcus_agalactiae_SA20-06 0
Streptococcus_agalactiae_GD201008-001 0
Streptococcus_agalactiae_NEM316 0
Streptococcus_agalactiae_2603V/R 0
Streptococcus_suis_T15 0
Streptococcus_salivarius_CCHSS3 0
Streptococcus_salivarius_JIM8777 0
Exiguobacterium_antarcticum_B7 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 1
Thermobacillus_composti_KWC4 0
Paenibacillus_mucilaginosus_KNP414 1
Paenibacillus_mucilaginosus_K02 1
Paenibacillus_larvae_subsp._larvae_DSM_25430 1
Paenibacillus_polymyxa_CR1 0
Paenibacillus_polymyxa_SC2 0
Paenibacillus_polymyxa_E681 0
Listeria_monocytogenes_EGD_sequence 0
Listeria_monocytogenes_serotype_4b_str._LL195 0
Listeria_monocytogenes_07PF0776 0
Listeria_monocytogenes_M7 0
Listeria_monocytogenes_J1-220 0
Listeria_monocytogenes_J1816 0
Listeria_monocytogenes_SLCC2376 0
Listeria_monocytogenes_SLCC5850 0
Listeria_monocytogenes_ATCC_19117 0
Listeria_monocytogenes_L312 0
Listeria_monocytogenes_SLCC2479 0
Listeria_monocytogenes_SLCC7179 0
Listeria_monocytogenes_SLCC2540 0
Listeria_monocytogenes_SLCC2378 0
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 0
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 0
Listeria_monocytogenes_serotype_7_str._SLCC2482 0
Listeria_monocytogenes_08-5578 0
Listeria_monocytogenes_08-5923 0
Listeria_monocytogenes_L99 0
Listeria_monocytogenes_HCC23 0
Listeria_monocytogenes_10403S 0
Listeria_monocytogenes_J0161 0
Listeria_monocytogenes_Finland_1998 0
Listeria_monocytogenes_FSL_R2-561 0
Listeria_monocytogenes_serotype_4b_str._F2365 0
Listeria_monocytogenes_EGD-e 0
Geobacillus_sp._C56-T3 1
Geobacillus_sp._Y4.1MC1 1
Geobacillus_sp._Y412MC52 1
Geobacillus_sp._Y412MC61 1
Amphibacillus_xylanus_NBRC_15112 1
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 1
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 1
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 1
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 1
Bacillus_amyloliquefaciens_LFB112 1
Bacillus_amyloliquefaciens_CC178 1
Bacillus_amyloliquefaciens_Y2 1
Bacillus_amyloliquefaciens_IT-45 1
Bacillus_amyloliquefaciens_XH7 1
Bacillus_amyloliquefaciens_LL3 1
Bacillus_amyloliquefaciens_TA208 1
Bacillus_amyloliquefaciens_DSM_7 1
Bacillus_licheniformis_9945A 1
Bacillus_subtilis_PY79 1
Bacillus_subtilis_XF-1 1
Bacillus_subtilis_QB928 1
Bacillus_subtilis_BSn5 1
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1
Bacillus_subtilis_subsp._natto_BEST195 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_infantis_NRRL_B-14911 1
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 1
Bacillus_toyonensis_BCT-7112 1
Bacillus_thuringiensis_HD-771 1
Bacillus_thuringiensis_HD-789 1
Bacillus_thuringiensis_MC28 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 1
Bacillus_thuringiensis_YBT-1518 1
Bacillus_thuringiensis_Bt407 2
Bacillus_thuringiensis_serovar_konkukian_str._97-27 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1
Bacillus_thuringiensis_BMB171 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1
Bacillus_cereus_FRI-35 1
Bacillus_cereus_biovar_anthracis_str._CI 1
Bacillus_cereus_AH820 1
Bacillus_cereus_AH187 1
Bacillus_cereus_B4264 1
Bacillus_cereus_G9842 1
Bacillus_cereus_Q1 1
Bacillus_cereus_F837/76 1
Bacillus_cereus_NC7401 1
Bacillus_cereus_E33L 1
Bacillus_cereus_ATCC_14579 1
Bacillus_cereus_ATCC_10987 1
Bacillus_anthracis_str._H9401 1
Bacillus_anthracis_str._CDC_684 1
Bacillus_anthracis_str._'Ames_Ancestor' 1
Bacillus_anthracis_str._Sterne 1
Bacillus_anthracis_str._Ames 1
Bacillus_megaterium_WSH-002 1
Bacillus_megaterium_QM_B1551 1
Bacillus_coagulans_36D1 1
Staphylococcus_pseudintermedius_ED99 0
Bacteroides_fragilis_NCTC_9343 0
Bdellovibrio_exovorus_JSS 0
Helicobacter_pylori_Shi112 1
Simiduia_agarivorans_SA1_=_DSM_21679 0
Aeromonas_hydrophila_ML09-119 0
Vibrio_sp._EJY3 0
Vibrio_parahaemolyticus_BB22OP 0
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 0
Vibrio_anguillarum_Listonella_anguillarum_M3 0
Vibrio_vulnificus_CMCP6 0
Vibrio_vulnificus_YJ016 0
Vibrio_cholerae_LMA3984-4 0
Vibrio_cholerae_M66-2 0
Vibrio_cholerae_O395 0
Vibrio_cholerae_IEC224 0
Vibrio_cholerae_O1_str._2010EL-1786 0
Vibrio_cholerae_MJ-1236 0
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 0
Shewanella_sp._W3-18-1 0
Shewanella_baltica_BA175 0
Shewanella_baltica_OS678 0
Shewanella_baltica_OS117 0
Shewanella_baltica_OS223 0
Shewanella_baltica_OS195 0
Shewanella_baltica_OS155 0
Shewanella_sp._MR-7 0
Shewanella_putrefaciens_200 0
Alcanivorax_dieselolei_B5 0
Thalassolituus_oleivorans_MIL-1 0
Edwardsiella_tarda_C07-087 0
Edwardsiella_tarda_FL6-60 0
Rahnella_aquatilis_HX2 0
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 0
Yersinia_enterocolitica_subsp._palearctica_Y11 0
Serratia_sp._AS13 0
Serratia_plymuthica_S13 0
Serratia_plymuthica_4Rx13 0
Serratia_marcescens_FGI94 0
Serratia_marcescens_WW4 0
Serratia_liquefaciens_ATCC_27592 0
Dickeya_dadantii_Ech586 0
Dickeya_dadantii_3937 0
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 0
Pantoea_ananatis_LMG_5342 0
Pantoea_ananatis_PA13 0
Pantoea_ananatis_AJ13355 0
Erwinia_pyrifoliae_DSM_12163 0
Erwinia_amylovora_CFBP1430 0
Cronobacter_sakazakii_CMCC_45402 0
Cronobacter_sakazakii_SP291 0
Cronobacter_sakazakii_ATCC_BAA-894 0
Candidatus_Blochmannia_chromaiodes_str._640 0
Candidatus_Blochmannia_pennsylvanicus_str._BPEN 0
Raoultella_ornithinolytica_B6 0
Shigella_sonnei_53G 0
Shigella_flexneri_2002017 0
Shigella_flexneri_2a_str._2457T 0
Shigella_flexneri_2a_str._301 0
Shigella_dysenteriae_1617 0
Shigella_boydii_Sb227 0
Salmonella_bongori_N268-08 0
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 0
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 0
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 0
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 0
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 0
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 0
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 0
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 0
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 0
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 0
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 0
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 0
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 0
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 0
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 0
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 0
Salmonella_enterica_serovar_Bovismorbificans_genomics 0
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 0
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 0
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 0
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 0
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 0
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 0
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 0
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 0
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 0
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 0
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 0
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 0
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 0
Klebsiella_oxytoca_KCTC_1686 0
Klebsiella_pneumoniae_JM45 0
Klebsiella_pneumoniae_CG43 0
Klebsiella_pneumoniae_KCTC_2242 0
Klebsiella_pneumoniae_342 0
Klebsiella_pneumoniae_subsp._pneumoniae_1084 0
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 0
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 0
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 0
Enterobacter_aerogenes_EA1509E 0
Escherichia_coli_E24377A 0
Escherichia_coli_E._coli_PMV-1 0
Escherichia_coli_JJ1886 0
Escherichia_coli_LY180 0
Escherichia_coli_APEC_O78 0
Escherichia_coli_O7:K1_str._CE10 0
Escherichia_coli_O104:H4_str._2009EL-2050 0
Escherichia_coli_O104:H4_str._2009EL-2071 0
Escherichia_coli_O104:H4_str._2011C-3493 0
Escherichia_coli_NA114 0
Escherichia_coli_P12b 0
Escherichia_coli_str._'clone_D_i2' 0
Escherichia_coli_str._'clone_D_i14' 0
Escherichia_coli_UM146 0
Escherichia_coli_042 0
Escherichia_coli_Xuzhou21 0
Escherichia_coli_IHE3034 0
Escherichia_coli_UMNK88 0
Escherichia_coli_O83:H1_str._NRG_857C 0
Escherichia_coli_ABU_83972 0
Escherichia_coli_KO11FL 0
Escherichia_coli_KO11FL 0
Escherichia_coli_LF82 0
Escherichia_coli_ED1a 0
Escherichia_coli_IAI39 0
Escherichia_coli_UMN026 0
Escherichia_coli_55989 0
Escherichia_coli_S88 0
Escherichia_coli_IAI1 0
Escherichia_coli_W 0
Escherichia_coli_W 0
Escherichia_coli_DH1 0
Escherichia_coli_DH1 0
Escherichia_coli_ATCC_8739 0
Escherichia_coli_BL21(DE3) 0
Escherichia_coli_BL21(DE3) 0
Escherichia_coli_SMS-3-5 0
Escherichia_coli_SE15 0
Escherichia_coli_SE11 0
Escherichia_coli_APEC_O1 0
Escherichia_coli_O103:H2_str._12009 0
Escherichia_coli_UTI89 0
Escherichia_coli_536 0
Escherichia_coli_HS 0
Escherichia_coli_ETEC_H10407 0
Escherichia_coli_O55:H7_str._RM12579 0
Escherichia_coli_O55:H7_str._CB9615 0
Escherichia_coli_O26:H11_str._11368 0
Escherichia_coli_CFT073 0
Escherichia_coli_O111:H-_str._11128 0
Escherichia_coli_O127:H6_str._E2348/69 0
Escherichia_coli_O157:H7_str._TW14359 0
Escherichia_coli_O157:H7_str._EC4115 0
Escherichia_coli_O157:H7_str._Sakai 0
Escherichia_coli_O157:H7_str._EDL933 0
Escherichia_coli_str._K-12_substr._MDS42 0
Escherichia_coli_BW2952 0
Escherichia_coli_str._K-12_substr._MG1655 0
Escherichia_coli_str._K-12_substr._W3110 0
Escherichia_coli_str._K-12_substr._DH10B 0
Escherichia_coli_B_str._REL606 0
Enterobacter_cloacae_SCF1 0
Enterobacter_cloacae_EcWSU1 0
Enterobacter_cloacae_subsp._cloacae_ENHKU01 0
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 0
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 0
Acinetobacter_sp.__SH024 0
Acinetobacter_baumannii_AB307-0294 0
Acinetobacter_baumannii_AYE 0
Acinetobacter_baumannii_AB0057 0
Acinetobacter_johnsonii__SH046 0
Candidatus_Nitrososphaera_gargensis_Ga9.2 0
Archaeoglobus_sulfaticallidus_PM70-1 0
Natrinema_pellirubrum_DSM_15624 0
Methanobacterium_sp._SWAN-1 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Petromyzon_marinus_69_7.0   (Sea lamprey)   0

Others
Genome     Number
Loa_loa_v3.3_(Request)   (Eye worm)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
Lotus_japonicus__(Early_assembly) 0
Malus_x_domestica_(Duplicate)   (Apple)   0
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Acholeplasma_laidlawii_PG-8A_(duplicate) 0
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 0
NCBI_plasmid_sequences_(Plasmids) 1
UniProt__viral_sequences_(Viral) 0
TargetDB__(Targets) 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 40
STRING_v9.0.5_(STRING) 55
Uniprot_2018_03_genome 1220
Protozoadb_2010_08_(Protozoadb) 0
NCBI_2017_08_genome 2623
PDB_chains_(SCOP_1.75)_(PDB) 2
NCBI_viral_sequences_(Viral) 1
Protein_Data_Bank_(all_PDB_sequenc) 10

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.