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  Home > SCOP hierarchy > Domain combination - 56219,_gap_

Domain combinations for 56219,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56219 - DNase I-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   17
Pan_troglodytes_76_2.1.4   (Chimpanzee)   3
Gorilla_gorilla_76_3.1   (Western gorilla)   3
Pongo_abelii_76_2   (Sumatran orangutan)   2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   9
Papio_anubis_76   (Olive baboon)   3
Macaca_mulatta_76_1   (Rhesus monkey)   8
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   16
Otolemur_garnettii_76_3   (Small-eared galago)   4
Microcebus_murinus_76_1   (Gray mouse lemur)   3
Rattus_norvegicus_76_5.0   (Norway rat)   4
Mus_musculus_76_38   (House mouse)   11
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   4
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2
Cavia_porcellus_76_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_76_2   (Rabbit)   3
Ochotona_princeps_76   (American pika)   2
Tupaia_belangeri_76   (Northern tree shrew)   5
Sus_scrofa_76_10.2   (Pig)   4
Bos_taurus_76_3.1   (Cattle)   4
Ovis_aries_76_3.1   (Sheep)   5
Vicugna_pacos_76_1   (Alpaca)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   5
Ailuropoda_melanoleuca_76_1   (Giant panda)   4
Canis_familiaris_76_3.1   (Dog)   5
Felis_catus_76_6.2   (Domestic cat)   3
Equus_caballus_76_2   (Horse)   35
Myotis_lucifugus_76_2.0   (Little brown bat)   5
Pteropus_vampyrus_76_1   (Large flying fox)   3
Sorex_araneus_76_1   (European shrew)   2
Erinaceus_europaeus_76   (Western European hedgehog)   2
Procavia_capensis_76_1   (Cape rock hyrax)   2
Loxodonta_africana_76_3   (African savanna elephant)   4
Echinops_telfairi_76   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   6
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_76_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   106
Ornithorhynchus_anatinus_76_5   (Platypus)   3
Saccoglossus_kowalevskii_v3.0 26
Petromyzon_marinus_76_7.0   (Sea lamprey)   4
Meleagris_gallopavo_76_2   (Turkey)   3
Gallus_gallus_76_4   (Chicken)   3
Anas_platyrhynchos_76_1.0   (Mallard)   4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   73
Anolis_carolinensis_76_2.0   (Green anole)   101
Xenopus_laevis_   (African clawed frog)   13
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   118
Latimeria_chalumnae_76_1   (Coelacanth)   190
Lepisosteus_oculatus_76   (Spotted gar)   26
Gadus_morhua_76_1   (Atlantic cod)   14
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   16
Takifugu_rubripes_76_4   (Torafugu)   20
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   14
Oryzias_latipes_76_1   (Japanese medaka)   42
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   10
Poecilia_formosa_76   (Amazon molly)   7
Oreochromis_niloticus_76_1.0   (Nile tilapia)   11
Astyanax_mexicanus_76   (Mexican tetra)   8
Danio_rerio_76_9   (Zebrafish)   16
Oikopleura_dioica 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   5
Ciona_intestinalis_76   (Vase tunicate)   4
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   43
Adineta_vaga 17
Octopus_bimaculoides_280 44
Crassostrea_gigas_22   (Pacific oyster)   8
Lottia_gigantea_   (Owl limpet)   20
Helobdella_robusta_ 80
Capitella_sp._I_ 110
Danaus_plexippus_OGS1.0   (Monarch butterfly)   12
Heliconius_melpomene_   (Postman butterfly)   3
Bombyx_mori_   (Domestic silkworm)   27
Nasonia_vitripennis_   (Jewel wasp)   3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   7
Linepithema_humile_v1.1   (Argentine ant)   6
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   11
Solenopsis_invicta_v.2.2.3   (Red fire ant)   15
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   4
Atta_cephalotes_v1.1 8
Camponotus_floridanus_v3.3   (Florida carpenter ant)   6
Lucilia_cuprina   (Australian sheep blowfly)   5
Drosophila_grimshawi_1.3 2
Drosophila_willistoni_1.3 6
Drosophila_pseudoobscura_2.13 7
Drosophila_persimilis_1.3 2
Drosophila_suzukii 3
Drosophila_yakuba_1.3 4
Drosophila_simulans_1.3 1
Drosophila_sechellia_1.3 1
Drosophila_melanogaster_76_5   (Fruit fly)   4
Drosophila_erecta_1.3 1
Drosophila_virilis_1.2 2
Drosophila_mojavensis_1.3 0
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   5
Anopheles_darlingi_22   (American malaria mosquito)   5
Anopheles_gambiae_49_3j   (African malaria mosquito)   3
Tribolium_castaneum_3.0   (Red flour beetle)   14
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   4
Acyrthosiphon_pisum_   (Pea aphid)   6
Rhodnius_prolixus_22 30
Daphnia_pulex_   (Common water flea)   61
Strigamia_maritima_22 7
Sarcoptes_scabiei 5
Tetranychus_urticae_   (Two-spotted spider mite)   6
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   10
Pristionchus_pacificus_ 9
Meloidogyne_incognita_   (Southern root-knot nematode)   9
Meloidogyne_hapla_ 4
Onchocerca_volvulus_22 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2
Caenorhabditis_japonica_ 20
Caenorhabditis_brenneri_ 7
Caenorhabditis_remanei_ 7
Caenorhabditis_elegans_76_235   (Roundworm)   3
Caenorhabditis_briggsae_2 3
Trichinella_spiralis_22 3
Hymenolepis_microstoma_ 10
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 2
Taenia_solium_   (Pork tapeworm)   2
Schistosoma_mansoni_ 3
Mnemiopsis_leidyi   (Sea walnut)   55
Thelohanellus_kitauei 3
Acropora_digitifera_v1.0 10
Nematostella_vectensis_1.0   (Starlet sea anemone)   29
Hydra_vulgaris 25
Amphimedon_queenslandica 18
Trichoplax_adhaerens_ 4
Proterospongia_sp._ATCC_50818_ 3
Monosiga_brevicollis_ 2
Sphaeroforma_arctica_JP610_ 10
Capsaspora_owczarzaki_ATCC_30864_ 2
Conidiobolus_coronatus_NRRL28638_v1.0 2
Mortierella_verticillata_NRRL_6337_ 3
Phycomyces_blakesleeanus_ 24
Rhizopus_oryzae_RA_99-880_ 32
Mucor_circinelloides_ 6
Rhizomucor_miehei_CAU432_ 5
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 2
Ustilago_maydis_ 2
Mixia_osmundae_IAM_14324_v1.0 4
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 3
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2
Melampsora_laricis-populina_ 3
Rhodotorula_graminis_WP1_v1.0 3
Sporobolomyces_roseus_IAM_13481_ 3
Microbotryum_violaceum_22 4
Wallemia_sebi_v1.0 5
Sphaerobolus_stellatus_v1.0 14
Piloderma_croceum_F_1598_v1.0 6
Serpula_lacrymans_var._lacrymans_S7.9_ 3
Coniophora_puteana 6
Hydnomerulius_pinastri_v2.0 6
Paxillus_rubicundulus_Ve08.2h10_v1.0 5
Pisolithus_microcarpus_441_v1.0 7
Pisolithus_tinctorius_Marx_270_v1.0 6
Scleroderma_citrinum_Foug_A_v1.0 7
Coprinopsis_cinerea_okayama7_130_v3 3
Pleurotus_ostreatus_   (Oyster mushroom)   3
Amanita_thiersii_Skay4041_v1.0 6
Amanita_muscaria_Koide_v1.0   (Fly agaric)   8
Galerina_marginata_v1.0 41
Hebeloma_cylindrosporum_h7_v2.0 4
Laccaria_bicolor_S238N-H82_ 3
Agaricus_bisporus_var._bisporus_ 20
Schizophyllum_commune_ 3
Stereum_hirsutum_FP-91666_SS1__v1.0 2
Heterobasidion_annosum_ 4
Gloeophyllum_trabeumv1.0 10
Punctularia_strigosozonata_v1.0 10
Sebacina_vermifera_MAFF_305830_v1.0 2
Fomitiporia_mediterranea_v1.0 3
Tulasnella_calospora_AL13/4D_v1.0 6
Postia_placenta_ 6
Wolfiporia_cocos_MD-104_SS10__v1.0 3
Fomitopsis_pinicolav1.0 21
Fomitopsis_pinicola_FP-58527_SS1_v3.0 32
Phanerochaete_chrysosporium_RP-78_2.1 4
Dichomitus_squalens 8
Trametes_versicolor_v1.0 29
Tremella_mesenterica_   (Witches' butter)   2
Daldinia_eschscholzii_EC12_v1.0 3
Apiospora_montagnei_NRRL_25634_v1.0 3
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 2
Podospora_anserina_ 2
Sporotrichum_thermophile_ATCC_42464_ 2
Thielavia_terrestris_NRRL_8126_ 3
Chaetomium_globosum_CBS_148.51_ 5
Neurospora_tetrasperma_ 2
Neurospora_discreta_FGSC_8579_ 2
Neurospora_crassa_OR74A_ 3
Cryphonectria_parasitica_   (Chestnut blight fungus)   2
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 1
Acremonium_alcalophilumv_1.0 2
Glomerella_graminicola_22 2
Fusarium_graminearum_ 3
Nectria_haematococca_mpVI_ 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3
Fusarium_verticillioides_7600_ 3
Trichoderma_asperellum_CBS_433.97_v1.0 2
Trichoderma_atroviride_ 2
Trichoderma_citrinoviride_v1.0 3
Trichoderma_reesei_1.2 2
Trichoderma_virens_Gv29-8_ 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1
Trichoderma_harzianum_CBS_226.95_v1.0 2
Amorphotheca_resinae_v1.0   (Creosote fungus)   3
Botrytis_cinerea_B05.10_ 2
Sclerotinia_sclerotiorum_ 11
Blumeria_graminis_22 4
Didymella_exigua_CBS_183.55_v1.0 4
Leptosphaeria_maculans_22 1
Setosphaeria_turcica_v1.0 3
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3
Cochliobolus_victoriae_FI3_v1.0 3
Cochliobolus_carbonum_26-R-13_v1.0 3
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3
Alternaria_brassicicola_ 1
Cochliobolus_lunatus_m118_v2.0 2
Pyrenophora_teres_f._teres_22 3
Pyrenophora_tritici-repentis_ 1
Stagonospora_nodorum_ 3
Mycosphaerella_graminicola_IPO323_ 4
Zasmidium_cellare_ATCC_36951_v1.0 4
Dothistroma_septosporum 3
Septoria_musiva_v1.0 3
Mycosphaerella_fijiensis_CIRAD86_ 3
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3
Paracoccidioides_brasiliensis_Pb18_ 2
Coccidioides_posadasii_RMSCC_3488_ 2
Coccidioides_immitis_RS_ 2
Ajellomyces_dermatitidis_SLH14081_ 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3
Microsporum_canis_CBS_113480_ 3
Trichophyton_equinum_CBS_127.97_ 3
Trichophyton_verrucosum_HKI_0517_ 3
Arthroderma_benhamiae_CBS_112371_ 3
Trichophyton_tonsurans_CBS_112818_ 3
Trichophyton_rubrum_CBS_118892_ 3
Uncinocarpus_reesii_1704_ 2
Aspergillus_zonatus_v1.0 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 3
Penicillium_chrysogenum_v1.0 2
Aspergillus_acidus_v1.0 3
Aspergillus_fumigatus_Af293 4
Aspergillus_brasiliensis_v1.0 3
Aspergillus_nidulans_FGSC_A4_ 3
Aspergillus_sydowii_v1.0 3
Aspergillus_versicolor_v1.0 3
Aspergillus_glaucus 3
Aspergillus_carbonarius_ITEM_5010_ 3
Neosartorya_fischeri_NRRL_181_ 4
Aspergillus_terreus_NIH2624_ 3
Aspergillus_tubingensis_v1.0 3
Aspergillus_wentii_v1.0 3
Aspergillus_oryzae_RIB40_ 2
Aspergillus_niger_22 3
Aspergillus_niger_ATCC_1015_ 2
Aspergillus_flavus_NRRL3357_ 2
Aspergillus_clavatus_NRRL_1_ 3
Penicillium_marneffei_ATCC_18224_ 5
Tuber_melanosporum_Mel28_22 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   5
Hansenula_polymorpha_v2.0 2
Dekkera_bruxellensis_CBS_2499_v2.0 2
Pichia_membranifaciensv1.0 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 2
Candida_dubliniensis_CD36_ 2
Candida_tropicalis_MYA-3404_ 2
Candida_parapsilosis_ 2
Candida_albicans_SC5314 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3
Pichia_stipitis_CBS_6054_ 2
Candida_guilliermondii_ATCC_6260_ 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 2
Debaromyces_hansenii 2
Wickerhamomyces_anomalus 2
Pichia_pastoris_GS115_ 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 0
Yarrowia_lipolytica_CLIB122 1
Candida_lusitaniae_ATCC_42720_ 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 4
Vanderwaltozyma_polyspora_DSM_70294_ 2
Candida_glabrata_CBS138 2
Kluyveromyces_thermotolerans_CBS_6340 2
Lachancea_kluyveri_ 2
Kluyveromyces_waltii 2
Ashbya_gossypii_ATCC_10895_ 0
Zygosaccharomyces_rouxii_ 2
Saccharomyces_mikatae_MIT 3
Saccharomyces_paradoxus_MIT 3
Saccharomyces_cerevisiae_76   (Baker's yeast)   1
Saccharomyces_bayanus_MIT 3
Kluyveromyces_lactis 2
Schizosaccharomyces_cryophilus_OY26_22 2
Schizosaccharomyces_octosporus_yFS286_ 2
Schizosaccharomyces_japonicus_yFS275_ 2
Schizosaccharomyces_pombe   (Fission yeast)   2
Catenaria_anguillulae_PL171_v1.0 10
Allomyces_macrogynus_ATCC_38327_ 6
Spizellomyces_punctatus_DAOM_BR117_ 2
Dictyostelium_discoideum 4
Dictyostelium_purpureum_ 0
Entamoeba_dispar_1.2 1
Entamoeba_invadens_1.2 0
Entamoeba_histolytica_1 0
Selaginella_moellendorffii_ 9
Pinus_taeda   (Loblolly pine)   18
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   7
Theobroma_cacao_B97-61/B2_v1   (Cacao)   68
Gossypium_raimondii_v221 4
Citrus_clementina_v165 7
Citrus_sinensis_v154   (Sweet orange)   9
Thellungiella_halophila_v173 3
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 2
Arabidopsis_lyrata_   (Lyrate rockcress)   1
Arabidopsis_thaliana_10   (Thale cress)   3
Carica_papaya_   (Papaya)   21
Medicago_truncatula_   (Barrel medic)   33
Phaseolus_vulgaris_v186   (French bean)   4
Glycine_max_v109   (Soybean)   7
Cucumis_sativus_v122   (Cucumber)   15
Fragaria_vesca_   (Wild strawberry)   44
Malus_domestica_v196   (Apple)   0
Prunus_persica_v139   (Peach)   16
Linum_usitatissimum_v200   (Flax)   2
Manihot_esculenta_v147   (Cassava)   3
Populus_trichocarpa_v156   (Black cottonwood)   7
Vitis_vinifera_   (Wine grape)   4
Mimulus_guttatus_v140   (Spotted monkey flower)   3
Solanum_lycopersicum_v.2.3   (Tomato)   2
Solanum_tuberosum_   (Potato)   19
Actinidia_chinensis_Hongyang_ 13
Aquilegia_coerulea_v195 2
Triticum_urartu_22 5
Triticum_aestivum_22   (Bread wheat)   21
Aegilops_tauschii_22 3
Brachypodium_distachyon_   (Stiff brome)   6
Oryza_barthii_22   (African wild rice)   3
Oryza_meridionalis_22 1
Oryza_glumaepatula_22 6
Oryza_glaberrima   (African rice)   2
Oryza_punctata_22 4
Oryza_nivara_22 1
Oryza_brachyantha_22   (Malo sina)   9
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   20
Oryza_sativa_v193   (Rice)   19
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   6
Panicum_virgatum_v202   (Switchgrass)   9
Setaria_italica_v164   (Foxtail millet)   3
Zea_mays_subsp._mays_   (Maize)   5
Zea_mays_v181   (Maize)   5
Sorghum_bicolor_   (Sorghum)   48
Musa_balbisiana   (Balbis banana)   4
Musa_acuminata_22   (Wild Malaysian banana)   4
Amborella_trichopoda_22 1
Physcomitrella_patens 9
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 3
Chlorella_variabilis_sp._NC64A_ 4
Chlorella_vulgaris_ 3
Volvox_carteri_f._nagariensis_ 24
Volvox_carteri_v199 7
Chlamydomonas_reinhardtii_4.0 7
Ostreococcus_sp._RCC809_ 3
Ostreococcus_lucimarinus_CCE9901_ 3
Ostreococcus_tauri_ 3
Bathycoccus_prasinos_ 0
Micromonas_sp._RCC299_ 1
Micromonas_pusilla_CCMP1545_v3.0 3
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Porphyridium_purpureum_02_2012 3
Thecamonas_trahens_ATCC_50062_ 4
Bigelowiella_natans_CCMP2755_22 7
Giardia_lamblia_2.3 1
Cyanophora_paradoxa_ 21
Leishmania_mexicana_2.4 1
Leishmania_major_strain_Friedlin_ 2
Leishmania_infantum_JPCM5_2.4 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2
Trypanosoma_vivax_ 34
Trypanosoma_cruzi_strain_CL_Brener 3
Trypanosoma_congolense_2.4 13
Trypanosoma_brucei_gambiense_v4.1 3
Trypanosoma_brucei_TREU927_v4.1 2
Ectocarpus_siliculosus 1
Aureococcus_anophagefferens_ 3
Albugo_laibachii_22 8
Pythium_iwayamai_DAOM_BR242034_22 8
Pythium_arrhenomanes_ATCC_12531_22 10
Pythium_ultimum_v1.7-2 10
Pythium_aphanidermatum_DAOM_BR444_22 8
Pythium_irregulare_DAOM_BR486_22 6
Pythium_vexans_DAOM_BR484_22 5
Phytophthora_ramorum_1.1   (Sudden oak death agent)   3
Phytophthora_sojae_1.1 5
Phytophthora_infestans_T30-4_ 7
Phytophthora_capsici_ 3
Hyaloperonospora_arabidopsidis_22 8
Phaeodactylum_tricornutumCCAP_1055/1 2
Fragilariopsis_cylindrus 5
Thalassiosira_pseudonana_CCMP1335 6
Perkinsus_marinus_ATCC_50983_ 11
Paramecium_tetraurelia_ 3
Tetrahymena_thermophila_SB210_1_ 5
Ichthyophthirius_multifiliis_strain_G5_ 0
Cryptosporidium_hominis 1
Cryptosporidium_muris 0
Cryptosporidium_parvum_Iowa_II 0
Neospora_caninum 0
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Babesia_bovis_T2Bo_ 0
Theileria_parva__ 0
Theileria_annulata 0
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 0
Plasmodium_chabaudi_ 0
Plasmodium_berghei_ANKA_ 0
Symbiodinium_minutum_clade_B1_v1.2 22
Naegleria_gruberi_ 8
Trichomonas_vaginalis_ 1
Guillardia_theta_CCMP2712_v1.0_ 3
Emiliania_huxleyi_CCMP1516_ 11
Acaryochloris_marina_MBIC11017 0
Synechocystis_sp._PCC_6803 0
Synechococcus_elongatus_PCC_7942 0
Cyanothece_sp._PCC_8802 0
Rivularia_sp._PCC_7116 0
Calothrix_sp._PCC_7507 0
Anabaena_variabilis_ATCC_29413 0
Nostoc_sp._PCC_7120 0
Nostoc_sp._PCC_7524 0
Ureaplasma_parvum_serovar_3_str._ATCC_27815 0
Ureaplasma_urealyticum_serovar_10_str._ATCC_33699 0
Mycoplasma_crocodyli_MP145 0
Mycoplasma_penetrans_HF-2 1
Mycoplasma_fermentans_M64 0
Mycoplasma_pulmonis_UAB_CTIP 0
Conexibacter_woesei_DSM_14684 0
Ilumatobacter_coccineus 0
Nakamurella_multipartita_DSM_44233 0
Stackebrandtia_nassauensis_DSM_44728 0
Frankia_symbiont_of_Datisca_glomerata 0
Streptosporangium_roseum_DSM_43021 0
Streptomyces_bingchenggensis_BCW-1 1
Streptomyces_violaceusniger_Tu_4113 0
Streptomyces_scabiei_87.22 1
Saccharopolyspora_erythraea_NRRL_2338 1
Nocardioides_sp._JS614 0
Propionibacterium_propionicum_F0230a 0
Propionibacterium_acnes_SK137 1
Tsukamurella_paurometabola_DSM_20162 3
Rhodococcus_erythropolis_PR4 1
Corynebacterium_resistens_DSM_45100 1
Corynebacterium_aurimucosum_ATCC_700975 0
Corynebacterium_kroppenstedtii_DSM_44385 1
Corynebacterium_efficiens_YS-314 0
Corynebacterium_urealyticum_DSM_7109 1
Corynebacterium_jeikeium_K411 1
Corynebacterium_glutamicum_R 0
Beutenbergia_cavernae_DSM_12333 0
Leifsonia_xyli_subsp._xyli_str._CTCB07 1
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 0
Arthrobacter_chlorophenolicus_A6 1
Renibacterium_salmoninarum_ATCC_33209 1
Micrococcus_luteus_NCTC_2665 0
Arcanobacterium_haemolyticum_DSM_20595 0
Anaerolinea_thermophila_UNI-1 0
Herpetosiphon_aurantiacus_DSM_785 0
Roseiflexus_castenholzii_DSM_13941 0
Chloroflexus_sp._MS-G 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aurantiacus_J-10-fl 0
Truepera_radiovictrix_DSM_17093 0
Deinococcus_gobiensis_I-0 0
Deinococcus_geothermalis_DSM_11300 0
Deinococcus_radiodurans_R1 0
Oceanithermus_profundus_DSM_14977 0
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1
Clostridium_clariflavum_DSM_19732 0
Roseburia_intestinalis 1
Streptococcus_intermedius_JTH08 0
Streptococcus_equi_subsp._equi_4047 0
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 0
Streptococcus_parasanguinis_ATCC_15912 0
Streptococcus_pyogenes_str._Manfredo 0
Streptococcus_suis_P1/7 0
Streptococcus_sanguinis_SK36 0
Streptococcus_gordonii_str._Challis_substr._CH1 0
Exiguobacterium_sp._MH3 0
Exiguobacterium_sp._AT1b 0
Exiguobacterium_sibiricum_255-15 0
Brevibacillus_brevis_NBRC_100599 0
Paenibacillus_terrae_HPL-003 0
Paenibacillus_mucilaginosus_3016 0
Bacillus_selenitireducens_MLS10 0
Solibacillus_silvestris_StLB046 0
Lysinibacillus_sphaericus_C3-41 0
Oceanobacillus_iheyensis_HTE831 2
Geobacillus_thermoleovorans_CCB_US3_UF5 0
Halobacillus_halophilus_DSM_2266 0
Bacillus_sp._1NLA3E 1
Melioribacter_roseus_P3M 1
Ignavibacterium_album_JCM_16511 0
Chlorobaculum_parvum_NCIB_8327 1
Chloroherpeton_thalassium_ATCC_35110 1
Chitinophaga_pinensis_DSM_2588 0
Salinibacter_ruber_M8 1
Belliella_baltica_DSM_15883 0
Fibrella_aestuarina 0
Spirosoma_linguale_DSM_74 0
Runella_slithyformis_DSM_19594 0
Parabacteroides_distasonis_ATCC_8503 1
Tannerella_forsythia_ATCC_43037 1
Alistipes_finegoldii_DSM_17242 1
Bacteroides_helcogenes_P_36-108 1
Bacteroides_vulgatus_ATCC_8482 1
Bacteroides_thetaiotaomicron_VPI-5482 1
Bacteroides_fragilis_YCH46 2
Pedobacter_saltans_DSM_12145 1
Fluviicola_taffensis_DSM_16823 1
Krokinobacter_sp._4H-3-7-5 0
Aequorivita_sublithincola_DSM_14238 1
Zobellia_galactanivorans 1
Muricauda_ruestringensis_DSM_13258 0
Cellulophaga_algicola_DSM_14237 0
Cellulophaga_lytica_DSM_7489 0
Polaribacter_sp._MED152 1
Flavobacterium_johnsoniae_UW101 0
Waddlia_chondrophila_WSU_86-1044 0
Phycisphaera_mikurensis_NBRC_102666 0
Isosphaera_pallida_ATCC_43644 0
Opitutus_terrae_PB90-1 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 0
Leptospira_interrogans_serovar_Lai_str._IPAV 1
Sphaerochaeta_globus_str._Buddy 1
Sphaerochaeta_coccoides_DSM_17374 1
Spirochaeta_caldaria_DSM_7334 0
Treponema_azotonutricium_ZAS-9 0
Treponema_primitia_ZAS-2 0
Spirochaeta_africana_DSM_8902 0
Candidatus_Chloracidobacterium_thermophilum_B 0
Granulicella_tundricola_MP5ACTX9 0
Granulicella_mallensis_MP5ACTX8 0
Terriglobus_saanensis_SP1PR4 0
Terriglobus_roseus_DSM_18391 0
Bacteriovorax_marinus_SJ 0
Bdellovibrio_bacteriovorus_HD100 0
Nitratifractor_salsuginis_DSM_16511 1
Arcobacter_sp._L 1
Arcobacter_nitrofigilis_DSM_7299 1
Arcobacter_butzleri_RM4018 1
Campylobacter_hominis_ATCC_BAA-381 1
Campylobacter_curvus_525.92 1
Campylobacter_concisus_13826 1
Campylobacter_sp._03-427 1
Campylobacter_fetus_subsp._fetus_82-40 1
Sulfurovum_sp._NBC37-1 1
Desulfatibacillum_alkenivorans_AK-01 0
Desulfobacterium_autotrophicum_HRM2 1
Haliangium_ochraceum_DSM_14365 0
Sorangium_cellulosum_'So_ce_56' 0
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 0
Myxococcus_xanthus_DK_1622 0
Myxococcus_fulvus_HW-1 0
Azoarcus_sp._BH72 0
Chromobacterium_violaceum_ATCC_12472 1
Burkholderia_rhizoxinica_HKI_454 0
Ralstonia_eutropha_JMP134 0
Cupriavidus_metallidurans_CH34 0
Ralstonia_pickettii_12D 0
Burkholderia_thailandensis_E264 0
Burkholderia_pseudomallei_1106a 0
Burkholderia_mallei_SAVP1 0
Burkholderia_cenocepacia_HI2424 0
Burkholderia_gladioli_BSR3 0
Delftia_sp._Cs1-4 0
Delftia_acidovorans_SPH-1 0
Polaromonas_sp._JS666 1
Acidovorax_sp._KKS102 1
Nitrosomonas_sp._Is79A3 1
Parvularcula_bermudensis_HTCC2503 0
Hyphomonas_neptunium_ATCC_15444 0
Dinoroseobacter_shibae_DFL_12 0
Phaeobacter_gallaeciensis_2.10 0
Pseudovibrio_sp._FO-BEG1 0
Rhodospirillum_centenum_SW 1
Azospirillum_lipoferum_4B 0
Gluconobacter_oxydans_621H 0
Polymorphum_gilvum_SL003B-26A1 0
Methylobacterium_chloromethanicum_CM4 0
Methylobacterium_extorquens_AM1 0
Methylobacterium_nodulans_ORS_2060 0
Sinorhizobium_medicae_WSM419 1
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 0
Rhizobium_etli_CIAT_652 1
Rhizobium_leguminosarum_bv._viciae_3841 0
Agrobacterium_tumefaciens_str._C58 1
Mesorhizobium_opportunistum_WSM2075 0
Saccharophagus_degradans_2-40 0
Teredinibacter_turnerae_T7901 0
Aeromonas_veronii_B565 0
Aeromonas_salmonicida_subsp._salmonicida_A449 0
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 0
Aliivibrio_salmonicida_LFI1238 1
Vibrio_fischeri_MJ11 1
Vibrio_sp._Ex25 0
Vibrio_harveyi_ATCC_BAA-1116 0
Vibrio_parahaemolyticus_RIMD_2210633 0
Vibrio_splendidus_LGP32 1
Vibrio_anguillarum_775 0
Vibrio_furnissii_NCTC_11218 0
Vibrio_vulnificus_MO6-24/O 0
Vibrio_cholerae_O395 0
Photobacterium_profundum_SS9 1
Psychromonas_ingrahamii_37 1
Psychromonas_sp._CNPT3 3
Shewanella_piezotolerans_WP3 1
Shewanella_loihica_PV-4 1
Shewanella_halifaxensis_HAW-EB4 1
Shewanella_sediminis_HAW-EB3 0
Shewanella_denitrificans_OS217 1
Shewanella_pealeana_ATCC_700345 1
Shewanella_oneidensis_MR-1 1
Shewanella_baltica_OS185 1
Shewanella_woodyi_ATCC_51908 1
Shewanella_sp._MR-4 1
Shewanella_amazonensis_SB2B 0
Shewanella_violacea_DSS12 1
Shewanella_frigidimarina_NCIMB_400 1
Shewanella_putrefaciens_CN-32 1
Colwellia_psychrerythraea_34H 0
Pseudoalteromonas_sp._SM9913 1
Pseudoalteromonas_haloplanktis_TAC125 1
Glaciecola_nitratireducens_FR1064 0
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1
Alteromonas_sp._SN2 0
Alteromonas_macleodii_str._'Deep_ecotype' 0
Hahella_chejuensis_KCTC_2396 0
Marinomonas_mediterranea_MMB-1 0
Halomonas_elongata_DSM_2581 0
Pseudoxanthomonas_spadix_BD-a59 0
Xanthomonas_axonopodis_pv._citri_str._306 1
Xanthomonas_campestris_pv._campestris_str._B100 1
Halothiobacillus_neapolitanus_c2 0
Thiocystis_violascens_DSM_198 0
Legionella_longbeachae_NSW150 1
Photorhabdus_luminescens_subsp._laumondii_TTO1 0
Sodalis_glossinidius_str._'morsitans' 1
Acinetobacter_oleivorans_DR1 0
Acinetobacter_calcoaceticus_PHEA-2 0
Acinetobacter_baumannii_ATCC_17978 1
Acinetobacter_sp._ADP1 0
Methanosaeta_concilii_GP6 1
Halogeometricum_borinquense_DSM_11551 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   8
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   3
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   4
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3
Cryptococcus_neoformans_var._grubii_H99_ 4
Cryptococcus_neoformans_B-3501A_ 3
Cryptococcus_neoformans_JEC21_ 3
Paracoccidioides_brasiliensis_Pb01_ 2
Paracoccidioides_brasiliensis_Pb03_ 2
Coccidioides_posadasii_str._Silveira_ 2
Coccidioides_immitis_RMSCC_3703_ 3
Coccidioides_immitis_RMSCC_2394_ 2
Coccidioides_immitis_H538.4_ 1
Ajellomyces_dermatitidis_ER-3_ 2
Histoplasma_capsulatum_H143 2
Histoplasma_capsulatum_H88 2
Histoplasma_capsulatum_G186AR 2
Aspergillus_fumigatus_A1163_ 2
Candida_albicans_WO-1_ 2
Saccharomyces_cerevisiae_UC5 1
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_FL100 0
Saccharomyces_cerevisiae_CLIB324 2
Saccharomyces_cerevisiae_CBS7960 2
Saccharomyces_cerevisiae_YJM269 1
Saccharomyces_cerevisiae_T7 1
Saccharomyces_cerevisiae_FostersB 3
Saccharomyces_cerevisiae_FostersO 0
Saccharomyces_cerevisiae_VL3 1
Saccharomyces_cerevisiae_Vin13 2
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_AWRI796 3
Saccharomyces_cerevisiae_Sigma1278b 1
Saccharomyces_cerevisiae_W303 1
Saccharomyces_cerevisiae_JAY291 1
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_M22 0
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 2
Saccharomyces_cerevisiae_Y10 0
Saccharomyces_cerevisiae_YJM789_ 1
Saccharomyces_cerevisiae_YJM789 1
Saccharomyces_cerevisiae_RM11-1a 2
Saccharomyces_cerevisiae_RM11-1a_ 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1
Schizosaccharomyces_pombe_972h-_ 2
Batrachochytrium_dendrobatidis_JEL423_ 2
Batrachochytrium_dendrobatidis_JAM81_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   26
Hordeum_vulgare_22   (Domesticated barley)   37
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   19
Trypanosoma_brucei_Lister_427_v4.1 2
Neospora_caninum_Nc-Liverpool_6.2 0
Plasmodium_falciparum_HB3_ 1
Plasmodium_falciparum_Dd2_ 1
Chamaesiphon_minutus_PCC_6605 0
Synechocystis_sp._PCC_6803_substr._PCC-P 0
Synechocystis_sp._PCC_6803_substr._PCC-N 0
Synechocystis_sp._PCC_6803_substr._GT-I 0
Synechocystis_sp._PCC_6803 0
Cyanobium_gracile_PCC_6307 0
Synechococcus_sp._JA-2-3B'a(2-13) 0
Synechococcus_sp._JA-3-3Ab 0
Synechococcus_elongatus_PCC_6301 0
Cyanothece_sp._PCC_7822 0
Cyanothece_sp._PCC_7424 0
Cyanothece_sp._ATCC_51142 0
Cyanothece_sp._PCC_8801 0
Cyanobacterium_aponinum_PCC_10605 0
Cylindrospermum_stagnale_PCC_7417 0
Anabaena_cylindrica_PCC_7122 0
Ureaplasma_parvum_serovar_3_str._ATCC_700970 0
Mycoplasma_cynos_C142 0
Mycoplasma_fermentans_JER 0
Mycoplasma_fermentans_PG18 0
Nocardiopsis_alba_ATCC_BAA-2165 1
Streptomyces_rapamycinicus_NRRL_5491 1
Propionibacterium_avidum_44067 0
Propionibacterium_acnes_TypeIA2_P.acn31 1
Propionibacterium_acnes_TypeIA2_P.acn17 1
Propionibacterium_acnes_TypeIA2_P.acn33 1
Propionibacterium_acnes_C1 1
Propionibacterium_acnes_HL096PA1 1
Propionibacterium_acnes_6609 1
Propionibacterium_acnes_266 1
Propionibacterium_acnes_KPA171202 1
Rhodococcus_erythropolis_CCM2595 1
Nocardia_brasiliensis_ATCC_700358 2
Mycobacterium_sp._MOTT36Y 1
Corynebacterium_maris_DSM_45190 0
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 0
Corynebacterium_urealyticum_DSM_7111 1
Corynebacterium_callunae_DSM_20147 0
Corynebacterium_glutamicum_MB001 0
Corynebacterium_glutamicum_SCgG2 0
Corynebacterium_glutamicum_SCgG1 0
Corynebacterium_glutamicum_ATCC_13032 0
Corynebacterium_glutamicum_ATCC_13032 0
Corynebacterium_glutamicum_ATCC_13032 0
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 0
Actinomyces_odontolyticus_ATCC_17982 0
Roseburia_intestinalis_XB6B4 1
Streptococcus_constellatus_subsp._pharyngis_C1050 0
Streptococcus_constellatus_subsp._pharyngis_C818 0
Streptococcus_constellatus_subsp._pharyngis_C232 0
Streptococcus_intermedius_B196 0
Streptococcus_intermedius_C270 0
Streptococcus_anginosus_C238 0
Streptococcus_anginosus_C1051 0
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 0
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 0
Streptococcus_equi_subsp._zooepidemicus 0
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 0
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 0
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 0
Streptococcus_parasanguinis_FW213 0
Streptococcus_pyogenes_HSC5 0
Streptococcus_pyogenes_A20 0
Streptococcus_pyogenes_MGAS1882 0
Streptococcus_pyogenes_MGAS15252 0
Streptococcus_pyogenes_Alab49 0
Streptococcus_pyogenes_MGAS10750 0
Streptococcus_pyogenes_MGAS10270 0
Streptococcus_pyogenes_MGAS2096 0
Streptococcus_pyogenes_MGAS9429 0
Streptococcus_pyogenes_MGAS6180 0
Streptococcus_pyogenes_NZ131 0
Streptococcus_pyogenes_MGAS8232 0
Streptococcus_pyogenes_MGAS10394 0
Streptococcus_pyogenes_MGAS315 0
Streptococcus_pyogenes_SSI-1 0
Streptococcus_pyogenes_M1_476 0
Streptococcus_pyogenes_MGAS5005 0
Streptococcus_pyogenes_M1_GAS 0
Streptococcus_suis_T15 0
Streptococcus_suis_TL13 0
Streptococcus_suis_SC070731 0
Streptococcus_suis_S735 0
Streptococcus_suis_ST3 0
Streptococcus_suis_D9 0
Streptococcus_suis_SS12 0
Streptococcus_suis_D12 0
Streptococcus_suis_ST1 0
Streptococcus_suis_A7 0
Streptococcus_suis_JS14 0
Streptococcus_suis_BM407 0
Streptococcus_suis_SC84 0
Streptococcus_suis_GZ1 0
Streptococcus_suis_98HAH33 0
Streptococcus_suis_05ZYH33 0
Exiguobacterium_antarcticum_B7 0
Paenibacillus_mucilaginosus_KNP414 0
Paenibacillus_mucilaginosus_K02 0
Paenibacillus_polymyxa_CR1 0
Paenibacillus_polymyxa_E681 0
Bacillus_infantis_NRRL_B-14911 0
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1
Salinibacter_ruber_DSM_13855 1
Rhodothermus_marinus_SG0.5JP17-172 1
Echinicola_vietnamensis_DSM_17526 1
Prevotella_sp._oral_taxon_299_str._F0039 1
Bacteroides_xylanisolvens_XB1A 1
Bacteroides_fragilis_638R 2
Bacteroides_fragilis_NCTC_9343 2
Psychroflexus_torquis_ATCC_700755 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 0
Leptospira_interrogans_serovar_Lai_str._56601 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 0
Bdellovibrio_bacteriovorus_str._Tiberius 1
Arcobacter_butzleri_7h1h 1
Arcobacter_butzleri_ED-1 1
Desulfovibrio_desulfuricans_ND132 1
Sorangium_cellulosum_So0157-2 2
Myxococcus_stipitatus_DSM_14675 0
Ralstonia_pickettii_12J 0
Burkholderia_thailandensis_MSMB121 0
Burkholderia_pseudomallei_MSHR305 1
Burkholderia_pseudomallei_NCTC_13179 1
Burkholderia_pseudomallei_BPC006 0
Burkholderia_pseudomallei_1026b 0
Burkholderia_pseudomallei_668 0
Burkholderia_pseudomallei_1710b 0
Burkholderia_pseudomallei_K96243 0
Burkholderia_mallei_NCTC_10229 0
Burkholderia_mallei_NCTC_10247 0
Burkholderia_mallei_ATCC_23344 0
Burkholderia_cenocepacia_MC0-3 0
Burkholderia_cenocepacia_AU_1054 0
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 1
Phaeobacter_gallaeciensis_DSM_17395 0
Phaeobacter_gallaeciensis_DSM_26640 0
Leisingera_methylohalidivorans_DSM_14336 0
Octadecabacter_antarcticus_307 0
Octadecabacter_arcticus_238 0
Gluconobacter_oxydans_H24 0
Methylobacterium_extorquens_DM4 0
Rhodopseudomonas_palustris_DX-1 0
Rhodopseudomonas_palustris_TIE-1 1
Rhodopseudomonas_palustris_HaA2 1
Rhodopseudomonas_palustris_CGA009 1
Simiduia_agarivorans_SA1_=_DSM_21679 0
Aeromonas_hydrophila_ML09-119 0
Vibrio_fischeri_ES114 1
Vibrio_sp._EJY3 0
Vibrio_parahaemolyticus_BB22OP 0
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 0
Vibrio_anguillarum_Listonella_anguillarum_M3 0
Vibrio_nigripulchritudo_VibrioScope 0
Vibrio_vulnificus_CMCP6 0
Vibrio_vulnificus_YJ016 0
Vibrio_cholerae_LMA3984-4 0
Vibrio_cholerae_M66-2 0
Vibrio_cholerae_O395 0
Vibrio_cholerae_IEC224 0
Vibrio_cholerae_O1_str._2010EL-1786 0
Vibrio_cholerae_MJ-1236 0
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 0
Shewanella_sp._W3-18-1 1
Shewanella_sp._ANA-3 1
Shewanella_baltica_BA175 1
Shewanella_baltica_OS678 1
Shewanella_baltica_OS117 1
Shewanella_baltica_OS223 1
Shewanella_baltica_OS195 1
Shewanella_baltica_OS155 1
Shewanella_sp._MR-7 1
Shewanella_putrefaciens_200 1
Glaciecola_psychrophila_170 0
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 0
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U8' 0
Alteromonas_macleodii_str._'Ionian_Sea_U7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U4' 0
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 0
Alteromonas_macleodii_str._'English_Channel_615' 0
Alteromonas_macleodii_AltDE1 0
Alteromonas_macleodii_str._'English_Channel_673' 0
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 0
Alteromonas_macleodii_str._'Black_Sea_11' 0
Alteromonas_macleodii_ATCC_27126 0
Alcanivorax_dieselolei_B5 0
Thalassolituus_oleivorans_MIL-1 0
Xanthomonas_citri_subsp._citri_Aw12879 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1
Xanthomonas_axonopodis_Xac29-1 1
Xanthomonas_campestris_pv._raphani_756C 1
Xanthomonas_campestris_pv._campestris_str._8004 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1
Pseudomonas_poae_RE*1-1-14 0
Pseudomonas_fluorescens_F113 1
Pseudomonas_aeruginosa_PA7 1
Acinetobacter_genomosp._13TU__RUH2624 0
Acinetobacter_sp.__SH024 0
Acinetobacter_calcoaceticus_ruh2202 0
Acinetobacter_baumannii_ZW85-1 0
Acinetobacter_baumannii_TYTH-1 0
Acinetobacter_baumannii_BJAB0868 0
Acinetobacter_baumannii_BJAB0715 0
Acinetobacter_baumannii_BJAB07104 0
Acinetobacter_baumannii_TCDC-AB0715 0
Acinetobacter_baumannii_D1279779 0
Acinetobacter_baumannii_MDR-TJ 0
Acinetobacter_baumannii_1656-2 0
Acinetobacter_baumannii__ATCC_19606 0
Acinetobacter_baumannii_AB307-0294 0
Acinetobacter_baumannii_AYE 0
Acinetobacter_baumannii_SDF 0
Acinetobacter_baumannii_MDR-ZJ06 0
Acinetobacter_baumannii_AB0057 0
Acinetobacter_baumannii_ACICU 0
Acinetobacter_junii__SH205 0
Acinetobacter_johnsonii__SH046 0
Acinetobacter_lwoffii__SH145 0
Halorhabdus_tiamatea_SARL4B 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   3
Pan_troglodytes_69_2.1.4   (Chimpanzee)   3
Gorilla_gorilla_69_3.1   (Western gorilla)   3
Pongo_abelii_69_2   (Sumatran orangutan)   2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3
Macaca_mulatta_69_1   (Rhesus monkey)   5
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   4
Otolemur_garnettii_69_3   (Small-eared galago)   4
Microcebus_murinus_69_1   (Gray mouse lemur)   3
Rattus_norvegicus_69_3.4   (Norway rat)   6
Mus_musculus_69_38   (House mouse)   8
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   4
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3
Cavia_porcellus_69_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_69_2   (Rabbit)   3
Ochotona_princeps_69   (American pika)   2
Tupaia_belangeri_69   (Northern tree shrew)   5
Sus_scrofa_69_10.2   (Pig)   4
Bos_taurus_69_3.1   (Cattle)   4
Vicugna_pacos_69_1   (Alpaca)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   5
Ailuropoda_melanoleuca_69_1   (Giant panda)   4
Canis_familiaris_69_3.1   (Dog)   5
Felis_catus_69   (Domestic cat)   5
Equus_caballus_69_2   (Horse)   35
Myotis_lucifugus_69_2.0   (Little brown bat)   5
Pteropus_vampyrus_69_1   (Large flying fox)   3
Sorex_araneus_69_1   (European shrew)   2
Erinaceus_europaeus_69   (Western European hedgehog)   2
Procavia_capensis_69_1   (Cape rock hyrax)   2
Loxodonta_africana_69_3   (African savanna elephant)   4
Echinops_telfairi_69   (Small Madagascar hedgehog)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_69_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   106
Ornithorhynchus_anatinus_69_5   (Platypus)   3
Petromyzon_marinus_69_7.0   (Sea lamprey)   2
Meleagris_gallopavo_69_2   (Turkey)   3
Gallus_gallus_69_2   (Chicken)   4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   6
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   73
Anolis_carolinensis_69_2.0   (Green anole)   89
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   112
Latimeria_chalumnae_69_1   (Coelacanth)   170
Gadus_morhua_69_1   (Atlantic cod)   9
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   12
Takifugu_rubripes_69_4   (Torafugu)   6
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   11
Oryzias_latipes_69_1   (Japanese medaka)   38
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   10
Oreochromis_niloticus_69_1.0   (Nile tilapia)   8
Danio_rerio_69_9   (Zebrafish)   14
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   4
Ciona_intestinalis_69   (Vase tunicate)   4
Drosophila_melanogaster_69_5   (Fruit fly)   2
Caenorhabditis_elegans_69_215   (Roundworm)   3
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1
Arabidopsis_thaliana_10   (Thale cress)   2

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   18
Homo_sapiens__(NCBI_version)   (Human)   5
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   9
Loa_loa_v3.3_(Request)   (Eye worm)   2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2
Moniliophthora_perniciosa_FA553__(Genome_survey) 2
Encephalitozoon_intestinalis__(endoparasite) 1
Encephalitozoon_cuniculi_(endoparasite) 2
Lotus_japonicus__(Early_assembly) 14
Malus_x_domestica_(Duplicate)   (Apple)   0
Ricinus_communis__(Early_assembly)   (Castor bean)   7
Nicotiana_benthamiana_0.4.4_(Early_draft) 23
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2
Phoenix_dactylifera__(Early_draft)   (Date palm)   12
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 0
NCBI_plasmid_sequences_(Plasmids) 13
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 6
UniProt__viral_sequences_(Viral) 1
Protein_Data_Bank_(all_PDB_sequenc) 21
TargetDB__(Targets) 32
Protozoadb_2010_08_(Protozoadb) 25
STRING_v9.0.5_(STRING) 754
Uniprot_2018_03_genome 41154
NCBI_viral_sequences_(Viral) 4
NCBI_2017_08_genome 11406

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.