SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 56487,57424,57424,57414,57424,56487,50494 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56487 - SRCR-like
57424 - LDL receptor-like module
57424 - LDL receptor-like module
57414 - Hairpin loop containing domain-like
57424 - LDL receptor-like module
56487 - SRCR-like
50494 - Trypsin-like serine proteases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_76   (Vase tunicate)   1

Longest transcript per gene
Genome     Number
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_69   (Vase tunicate)   1

Others
Genome     Number
STRING_v9.0.5_(STRING) 1
NCBI_2017_08_genome 0
Uniprot_2018_03_genome 50

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