SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 56502 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56502 - gp120 core

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Otolemur_garnettii_76_3   (Small-eared galago)   0
Rattus_norvegicus_76_5.0   (Norway rat)   0
Mus_musculus_76_38   (House mouse)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   0
Tursiops_truncatus_76_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Loxodonta_africana_76_3   (African savanna elephant)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   0
Anas_platyrhynchos_76_1.0   (Mallard)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_76_1   (Coelacanth)   0
Takifugu_rubripes_76_4   (Torafugu)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Oikopleura_dioica 0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Crassostrea_gigas_22   (Pacific oyster)   0
Lottia_gigantea_   (Owl limpet)   0
Helobdella_robusta_ 0
Bombyx_mori_   (Domestic silkworm)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Drosophila_willistoni_1.3 0
Drosophila_yakuba_1.3 0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_darlingi_22   (American malaria mosquito)   0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Daphnia_pulex_   (Common water flea)   0
Strigamia_maritima_22 0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   0
Pristionchus_pacificus_ 0
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Meloidogyne_hapla_ 0
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Echinococcus_granulosus_ 0
Acropora_digitifera_v1.0 0
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Hydra_vulgaris 0
Amphimedon_queenslandica 0
Proterospongia_sp._ATCC_50818_ 0
Phycomyces_blakesleeanus_ 0
Rhizopus_oryzae_RA_99-880_ 0
Rhizomucor_miehei_CAU432_ 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Melampsora_laricis-populina_ 0
Serpula_lacrymans_var._lacrymans_S7.9_ 0
Paxillus_rubicundulus_Ve08.2h10_v1.0 0
Pisolithus_microcarpus_441_v1.0 0
Scleroderma_citrinum_Foug_A_v1.0 0
Galerina_marginata_v1.0 0
Hebeloma_cylindrosporum_h7_v2.0 0
Punctularia_strigosozonata_v1.0 0
Magnaporthe_poae_ATCC_64411_22 0
Podospora_anserina_ 0
Verticillium_albo-atrum_VaMs.102_ 0
Nectria_haematococca_mpVI_ 0
Trichoderma_asperellum_CBS_433.97_v1.0 0
Trichoderma_harzianum_CBS_226.95_v1.0 0
Sclerotinia_sclerotiorum_ 0
Cochliobolus_lunatus_m118_v2.0 0
Ajellomyces_dermatitidis_SLH14081_ 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Microsporum_canis_CBS_113480_ 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 0
Aspergillus_sydowii_v1.0 0
Aspergillus_niger_22 0
Dekkera_bruxellensis_CBS_2499_v2.0 0
Candida_parapsilosis_ 0
Lodderomyces_elongisporus_NRRL_YB-4239_ 0
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Pinus_taeda   (Loblolly pine)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   0
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   0
Prunus_persica_v139   (Peach)   0
Linum_usitatissimum_v200   (Flax)   0
Vitis_vinifera_   (Wine grape)   0
Solanum_lycopersicum_v.2.3   (Tomato)   0
Solanum_tuberosum_   (Potato)   0
Aquilegia_coerulea_v195 0
Triticum_aestivum_22   (Bread wheat)   0
Aegilops_tauschii_22 0
Oryza_punctata_22 0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_v181   (Maize)   0
Sorghum_bicolor_   (Sorghum)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Amborella_trichopoda_22 0
Ostreococcus_sp._RCC809_ 0
Giardia_lamblia_2.3 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Albugo_laibachii_22 0
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 0
Hyaloperonospora_arabidopsidis_22 0
Thalassiosira_pseudonana_CCMP1335 0
Perkinsus_marinus_ATCC_50983_ 0
Paramecium_tetraurelia_ 0
Cryptosporidium_hominis 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Naegleria_gruberi_ 0
Trichomonas_vaginalis_ 0
Emiliania_huxleyi_CCMP1516_ 0
Halothece_sp._PCC_7418 0
Microcystis_aeruginosa_NIES-843 0
Calothrix_sp._PCC_7507 0
Mycoplasma_haemofelis_Ohio2 0
Mycoplasma_hominis_ATCC_23114 0
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 0
Clostridium_clariflavum_DSM_19732 0
Clostridium_cellulovorans_743B 0
Chlorobaculum_parvum_NCIB_8327 0
Haliscomenobacter_hydrossis_DSM_1100 0
Runella_slithyformis_DSM_19594 0
Bacteroides_vulgatus_ATCC_8482 0
Pedobacter_heparinus_DSM_2366 0
Weeksella_virosa_DSM_16922 0
Flavobacterium_indicum_GPTSA100-9 0
Treponema_azotonutricium_ZAS-9 0
Sulfurihydrogenibium_sp._YO3AOP1 0
Leptotrichia_buccalis_C-1013-b 0
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 0
Arcobacter_butzleri_RM4018 0
Helicobacter_hepaticus_ATCC_51449 0
Corallococcus_coralloides_DSM_2259 0
Achromobacter_xylosoxidans_A8 0
Rickettsia_felis_URRWXCal2 0
Mesorhizobium_opportunistum_WSM2075 0
Candidatus_Vesicomyosocius_okutanii_HA 0
Enterobacteriaceae_bacterium_strain_FGI_57 0
Enterobacter_cloacae_subsp._dissolvens_SDM 0
Pseudomonas_fluorescens_SBW25 0
Hyperthermus_butylicus_DSM_5456 0
Methanocorpusculum_labreanum_Z 0
Thermococcus_gammatolerans_EJ3 0
Salinarchaeum_sp._Harcht-Bsk1 0
Methanothermococcus_okinawensis_IH1 0
Methanococcus_maripaludis_C5 0
Methanosphaera_stadtmanae_DSM_3091 0
Methanobrevibacter_sp._AbM4 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Coccidioides_posadasii_str._Silveira_ 0
Histoplasma_capsulatum_H143 0
Histoplasma_capsulatum_H88 0
Histoplasma_capsulatum_G186AR 0
Saccharomyces_cerevisiae_PW5 0
Saccharomyces_cerevisiae_T7 0
Saccharomyces_cerevisiae_Vin13 0
Saccharomyces_cerevisiae_YJM789_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Hordeum_vulgare_22   (Domesticated barley)   0
Dactylococcopsis_salina_PCC_8305 0
Anabaena_cylindrica_PCC_7122 0
Clostridium_botulinum_BKT015925 0
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 0
Bacillus_cereus_AH820 0
Emticicia_oligotrophica_DSM_17448 0
Prevotella_sp._oral_taxon_299_str._F0039 0
Porphyromonas_gingivalis_TDC60 0
Brachyspira_pilosicoli_B2904 0
Brachyspira_pilosicoli_P43/6/78 0
Arcobacter_butzleri_7h1h 0
Campylobacter_jejuni_RM1221 0
Helicobacter_pylori_Shi112 0
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 0
Ralstonia_solanacearum_CMR15 0
Ralstonia_solanacearum_GMI1000 0
Sinorhizobium_fredii_HH103 0
Pasteurella_multocida_subsp._multocida_str._HN06 0
Serratia_marcescens_WW4 0
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 0
Escherichia_coli_str._'clone_D_i2' 0
Escherichia_coli_str._'clone_D_i14' 0
Escherichia_coli_CFT073 0
Pseudomonas_stutzeri_CCUG_29243 0
Acinetobacter_baumannii_BJAB0868 0
Methanococcus_maripaludis_X1 0
Methanococcus_maripaludis_C6 0
Methanococcus_maripaludis_C7 0
Methanococcus_maripaludis_S2 0

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Longest transcript per gene
Genome     Number
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Otolemur_garnettii_69_3   (Small-eared galago)   0
Rattus_norvegicus_69_3.4   (Norway rat)   0
Mus_musculus_69_38   (House mouse)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   0
Tursiops_truncatus_69_1   (Bottlenose dolphin)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Loxodonta_africana_69_3   (African savanna elephant)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Latimeria_chalumnae_69_1   (Coelacanth)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0

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Others
Genome     Number
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Loa_loa_v3.3_(Request)   (Eye worm)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
Lotus_japonicus__(Early_assembly) 0
Malus_x_domestica_(Duplicate)   (Apple)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
Phoenix_dactylifera__(Early_draft)   (Date palm)   0
NCBI_plasmid_sequences_(Plasmids) 0
Protozoadb_2010_08_(Protozoadb) 0
TargetDB__(Targets) 0
STRING_v9.0.5_(STRING) 0
NCBI_viral_sequences_(Viral) 0
NCBI_2017_08_genome 1
PDB_chains_(SCOP_1.75)_(PDB) 14
Protein_Data_Bank_(all_PDB_sequenc) 115
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 566
UniProt__viral_sequences_(Viral) 78196
Uniprot_2018_03_genome 132484

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