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Domain combinations for 56574,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56574 - Serpins

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   2
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Pongo_abelii_76_2   (Sumatran orangutan)   0
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Papio_anubis_76   (Olive baboon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_76_3   (Small-eared galago)   1
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Rattus_norvegicus_76_5.0   (Norway rat)   2
Mus_musculus_76_38   (House mouse)   6
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Ochotona_princeps_76   (American pika)   0
Sus_scrofa_76_10.2   (Pig)   0
Bos_taurus_76_3.1   (Cattle)   1
Ovis_aries_76_3.1   (Sheep)   0
Vicugna_pacos_76_1   (Alpaca)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   1
Pteropus_vampyrus_76_1   (Large flying fox)   1
Sorex_araneus_76_1   (European shrew)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Procavia_capensis_76_1   (Cape rock hyrax)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Latimeria_chalumnae_76_1   (Coelacanth)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2
Oryzias_latipes_76_1   (Japanese medaka)   3
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   2
Oikopleura_dioica 3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 6
Crassostrea_gigas_22   (Pacific oyster)   0
Capitella_sp._I_ 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2
Heliconius_melpomene_   (Postman butterfly)   0
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   6
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 1
Drosophila_yakuba_1.3 2
Drosophila_simulans_1.3 4
Drosophila_sechellia_1.3 3
Drosophila_melanogaster_76_5   (Fruit fly)   5
Drosophila_erecta_1.3 2
Drosophila_ananassae_1.3 3
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 3
Megaselia_scalaris_22 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   3
Anopheles_darlingi_22   (American malaria mosquito)   2
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3
Acyrthosiphon_pisum_   (Pea aphid)   0
Daphnia_pulex_   (Common water flea)   1
Strigamia_maritima_22 1
Sarcoptes_scabiei 2
Tetranychus_urticae_   (Two-spotted spider mite)   3
Pristionchus_pacificus_ 2
Onchocerca_volvulus_22 1
Caenorhabditis_japonica_ 2
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   4
Caenorhabditis_briggsae_2 2
Trichinella_spiralis_22 1
Mnemiopsis_leidyi   (Sea walnut)   2
Thelohanellus_kitauei 14
Acropora_digitifera_v1.0 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Conidiobolus_coronatus_NRRL28638_v1.0 1
Laccaria_bicolor_S238N-H82_ 0
Fusarium_verticillioides_7600_ 1
Capsella_rubella_v183 1
Medicago_truncatula_   (Barrel medic)   2
Fragaria_vesca_   (Wild strawberry)   3
Malus_domestica_v196   (Apple)   1
Linum_usitatissimum_v200   (Flax)   2
Solanum_tuberosum_   (Potato)   2
Triticum_urartu_22 8
Triticum_aestivum_22   (Bread wheat)   3
Aegilops_tauschii_22 20
Brachypodium_distachyon_   (Stiff brome)   4
Oryza_barthii_22   (African wild rice)   3
Oryza_meridionalis_22 5
Oryza_glumaepatula_22 3
Oryza_glaberrima   (African rice)   3
Oryza_punctata_22 4
Oryza_nivara_22 4
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   7
Oryza_sativa_v193   (Rice)   7
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Panicum_virgatum_v202   (Switchgrass)   11
Setaria_italica_v164   (Foxtail millet)   7
Sorghum_bicolor_   (Sorghum)   7
Musa_balbisiana   (Balbis banana)   1
Musa_acuminata_22   (Wild Malaysian banana)   1
Chlorella_variabilis_sp._NC64A_ 0
Bigelowiella_natans_CCMP2755_22 0
Neospora_caninum 2
Toxoplasma_gondii_VEG 2
Toxoplasma_gondii_ME49 2
Toxoplasma_gondii_GT1 1
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 3
Emiliania_huxleyi_CCMP1516_ 2
Thermomonospora_curvata_DSM_43183 0
Micromonospora_sp._L5 1
Micromonospora_aurantiaca_ATCC_27029 1
Nocardia_cyriacigeorgica_GUH-2 0
Bifidobacterium_longum_subsp._longum_JDM301 1
Bifidobacterium_breve_ACS-071-V-Sch8b 0
Prevotella_ruminicola_23 1
Porphyromonas_asaccharolytica_DSM_20707 1

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   4
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3
Paracoccidioides_brasiliensis_Pb01_ 0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   6
Neospora_caninum_Nc-Liverpool_6.2 2
Streptomyces_albus_J1074 1
Mycobacterium_kansasii_ATCC_12478 1
Bifidobacterium_longum_NCC2705 1
Bifidobacterium_longum_DJO10A 1
Bifidobacterium_longum_subsp._infantis_157F 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._longum_KACC_91563 0
Bifidobacterium_longum_subsp._longum_BBMN68 1
Bifidobacterium_longum_subsp._longum_F8 1
Bifidobacterium_longum_subsp._longum_JCM_1217 1
Bifidobacterium_breve_UCC2003 0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Pongo_abelii_69_2   (Sumatran orangutan)   0
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_69_3   (Small-eared galago)   1
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Rattus_norvegicus_69_3.4   (Norway rat)   2
Mus_musculus_69_38   (House mouse)   3
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Ochotona_princeps_69   (American pika)   0
Sus_scrofa_69_10.2   (Pig)   0
Bos_taurus_69_3.1   (Cattle)   1
Vicugna_pacos_69_1   (Alpaca)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   1
Felis_catus_69   (Domestic cat)   0
Pteropus_vampyrus_69_1   (Large flying fox)   1
Sorex_araneus_69_1   (European shrew)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Procavia_capensis_69_1   (Cape rock hyrax)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Gallus_gallus_69_2   (Chicken)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Latimeria_chalumnae_69_1   (Coelacanth)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   2
Oryzias_latipes_69_1   (Japanese medaka)   2
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1
Danio_rerio_69_9   (Zebrafish)   1
Drosophila_melanogaster_69_5   (Fruit fly)   3
Caenorhabditis_elegans_69_215   (Roundworm)   2

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3
Heliconius_numata__(Incomplete) 2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Lotus_japonicus__(Early_assembly) 22
Malus_x_domestica_(Duplicate)   (Apple)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
STRING_v9.0.5_(STRING) 78
Protein_Data_Bank_(all_PDB_sequenc) 1
Uniprot_2018_03_genome 2742
NCBI_2017_08_genome 811
Protozoadb_2010_08_(Protozoadb) 4
TargetDB__(Targets) 1

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