SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 56672,53098 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56672 - DNA/RNA polymerases
53098 - Ribonuclease H-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Pan_troglodytes_76_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   0
Pongo_abelii_76_2   (Sumatran orangutan)   0
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Papio_anubis_76   (Olive baboon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_76_3   (Small-eared galago)   0
Rattus_norvegicus_76_5.0   (Norway rat)   0
Mus_musculus_76_38   (House mouse)   0
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   2
Bos_taurus_76_3.1   (Cattle)   0
Ovis_aries_76_3.1   (Sheep)   2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_76_1   (Giant panda)   0
Canis_familiaris_76_3.1   (Dog)   0
Felis_catus_76_6.2   (Domestic cat)   2
Equus_caballus_76_2   (Horse)   0
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Loxodonta_africana_76_3   (African savanna elephant)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   4
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   22
Saccoglossus_kowalevskii_v3.0 0
Meleagris_gallopavo_76_2   (Turkey)   1
Gallus_gallus_76_4   (Chicken)   4
Anas_platyrhynchos_76_1.0   (Mallard)   0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   6
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_76_2.0   (Green anole)   7
Latimeria_chalumnae_76_1   (Coelacanth)   43
Lepisosteus_oculatus_76   (Spotted gar)   3
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Takifugu_rubripes_76_4   (Torafugu)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Astyanax_mexicanus_76   (Mexican tetra)   2
Danio_rerio_76_9   (Zebrafish)   0
Oikopleura_dioica 2
Ciona_intestinalis_76   (Vase tunicate)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   16
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   1
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   22
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3
Linepithema_humile_v1.1   (Argentine ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 0
Drosophila_suzukii 0
Drosophila_yakuba_1.3 1
Drosophila_mojavensis_1.3 0
Anopheles_darlingi_22   (American malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   13
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Acyrthosiphon_pisum_   (Pea aphid)   8
Strigamia_maritima_22 6
Pristionchus_pacificus_ 1
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Meloidogyne_hapla_ 1
Onchocerca_volvulus_22 0
Caenorhabditis_japonica_ 5
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 3
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 7
Hymenolepis_microstoma_ 10
Echinococcus_multilocularis_ 3
Echinococcus_granulosus_ 0
Taenia_solium_   (Pork tapeworm)   3
Schistosoma_mansoni_ 1
Mnemiopsis_leidyi   (Sea walnut)   2
Thelohanellus_kitauei 24
Acropora_digitifera_v1.0 27
Nematostella_vectensis_1.0   (Starlet sea anemone)   1
Hydra_vulgaris 16
Amphimedon_queenslandica 17
Phycomyces_blakesleeanus_ 0
Rhizopus_oryzae_RA_99-880_ 8
Rhizomucor_miehei_CAU432_ 0
Sporisorium_reilianum_22 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3
Melampsora_laricis-populina_ 0
Sphaerobolus_stellatus_v1.0 0
Pisolithus_microcarpus_441_v1.0 8
Pisolithus_tinctorius_Marx_270_v1.0 6
Scleroderma_citrinum_Foug_A_v1.0 10
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Laccaria_bicolor_S238N-H82_ 0
Heterobasidion_annosum_ 1
Tulasnella_calospora_AL13/4D_v1.0 0
Phanerochaete_chrysosporium_RP-78_2.1 8
Trametes_versicolor_v1.0 1
Tremella_mesenterica_   (Witches' butter)   0
Podospora_anserina_ 0
Sporotrichum_thermophile_ATCC_42464_ 0
Chaetomium_globosum_CBS_148.51_ 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Botrytis_cinerea_B05.10_ 2
Sclerotinia_sclerotiorum_ 3
Blumeria_graminis_22 1
Setosphaeria_turcica_v1.0 0
Alternaria_brassicicola_ 0
Pyrenophora_teres_f._teres_22 2
Stagonospora_nodorum_ 0
Septoria_musiva_v1.0 0
Ajellomyces_dermatitidis_SLH14081_ 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Trichophyton_tonsurans_CBS_112818_ 0
Penicillium_chrysogenum_v1.0 0
Aspergillus_acidus_v1.0 0
Aspergillus_fumigatus_Af293 1
Aspergillus_terreus_NIH2624_ 1
Aspergillus_oryzae_RIB40_ 0
Aspergillus_niger_22 0
Aspergillus_flavus_NRRL3357_ 0
Penicillium_marneffei_ATCC_18224_ 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   282
Candida_dubliniensis_CD36_ 0
Candida_tropicalis_MYA-3404_ 0
Candida_albicans_SC5314 0
Lodderomyces_elongisporus_NRRL_YB-4239_ 4
Yarrowia_lipolytica_CLIB122 0
Candida_lusitaniae_ATCC_42720_ 0
Vanderwaltozyma_polyspora_DSM_70294_ 0
Candida_glabrata_CBS138 0
Kluyveromyces_waltii 0
Saccharomyces_mikatae_MIT 0
Saccharomyces_paradoxus_MIT 0
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Schizosaccharomyces_cryophilus_OY26_22 0
Schizosaccharomyces_pombe   (Fission yeast)   0
Catenaria_anguillulae_PL171_v1.0 1
Spizellomyces_punctatus_DAOM_BR117_ 2
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Entamoeba_invadens_1.2 1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   434
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Medicago_truncatula_   (Barrel medic)   0
Glycine_max_v109   (Soybean)   1
Cucumis_sativus_v122   (Cucumber)   16
Fragaria_vesca_   (Wild strawberry)   3
Malus_domestica_v196   (Apple)   1
Prunus_persica_v139   (Peach)   12
Solanum_lycopersicum_v.2.3   (Tomato)   1
Solanum_tuberosum_   (Potato)   1
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   2
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_glaberrima   (African rice)   0
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   146
Oryza_sativa_v193   (Rice)   147
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Sorghum_bicolor_   (Sorghum)   7
Musa_balbisiana   (Balbis banana)   108
Musa_acuminata_22   (Wild Malaysian banana)   0
Amborella_trichopoda_22 1
Volvox_carteri_f._nagariensis_ 0
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 0
Bigelowiella_natans_CCMP2755_22 0
Cyanophora_paradoxa_ 0
Trypanosoma_congolense_2.4 2
Trypanosoma_brucei_gambiense_v4.1 0
Trypanosoma_brucei_TREU927_v4.1 0
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_arrhenomanes_ATCC_12531_22 3
Pythium_ultimum_v1.7-2 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   25
Phytophthora_sojae_1.1 93
Phytophthora_infestans_T30-4_ 9
Phytophthora_capsici_ 1
Perkinsus_marinus_ATCC_50983_ 7
Plasmodium_yoelii_ssp._yoelii_1_ 0
Symbiodinium_minutum_clade_B1_v1.2 0
Trichomonas_vaginalis_ 2
Guillardia_theta_CCMP2712_v1.0_ 2
Emiliania_huxleyi_CCMP1516_ 0
Candidatus_Desulforudis_audaxviator_MP104C 1
Fervidobacterium_pennivorans_DSM_9078 1
Fervidobacterium_nodosum_Rt17-B1 1
Thermotoga_sp._RQ2 1
Thermotoga_naphthophila_RKU-10 1
Thermotoga_petrophila_RKU-1 1
Thermotoga_neapolitana_DSM_4359 1
Thermotoga_maritima_MSB8 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   4
Cryptococcus_neoformans_B-3501A_ 0
Cryptococcus_neoformans_JEC21_ 0
Candida_albicans_WO-1_ 0
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_PW5 0
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_W303 0
Saccharomyces_cerevisiae_JAY291 0
Saccharomyces_cerevisiae_T73 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Schizosaccharomyces_pombe_972h-_ 0
Batrachochytrium_dendrobatidis_JEL423_ 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   206
Hordeum_vulgare_22   (Domesticated barley)   1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   21
Trypanosoma_brucei_Lister_427_v4.1 0
Thermotoga_maritima_MSB8 1
Shigella_boydii_Sb227 1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Pan_troglodytes_69_2.1.4   (Chimpanzee)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   0
Pongo_abelii_69_2   (Sumatran orangutan)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_69_3   (Small-eared galago)   0
Mus_musculus_69_38   (House mouse)   0
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Bos_taurus_69_3.1   (Cattle)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Ailuropoda_melanoleuca_69_1   (Giant panda)   0
Canis_familiaris_69_3.1   (Dog)   0
Equus_caballus_69_2   (Horse)   0
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Loxodonta_africana_69_3   (African savanna elephant)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   22
Meleagris_gallopavo_69_2   (Turkey)   1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   6
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2
Latimeria_chalumnae_69_1   (Coelacanth)   34
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Takifugu_rubripes_69_4   (Torafugu)   1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Danio_rerio_69_9   (Zebrafish)   0
Ciona_intestinalis_69   (Vase tunicate)   1
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
Moniliophthora_perniciosa_FA553__(Genome_survey) 6
Lotus_japonicus__(Early_assembly) 1
Malus_x_domestica_(Duplicate)   (Apple)   1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1
Phoenix_dactylifera__(Early_draft)   (Date palm)   4
NCBI_plasmid_sequences_(Plasmids) 1
TargetDB__(Targets) 3
STRING_v9.0.5_(STRING) 385
UniProt__viral_sequences_(Viral) 1050
NCBI_2017_08_genome 2344
NCBI_viral_sequences_(Viral) 2
Uniprot_2018_03_genome 16608
Protozoadb_2010_08_(Protozoadb) 0
Protein_Data_Bank_(all_PDB_sequenc) 336
PDB_chains_(SCOP_1.75)_(PDB) 36

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